Found: 53
Select item for more details and to access through your institution.
A high-throughput yeast display approach to profile pathogen proteomes for MHC-II binding.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.78589
- By:
- Publication type:
- Article
A pan-variant mRNA-LNP T cell vaccine protects HLA transgenic mice from mortality after infection with SARS-CoV-2 Beta.
- Published in:
- Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1135815
- By:
- Publication type:
- Article
Differential chromatin profiles partially determine transcription factor binding.
- Published in:
- PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0179411
- By:
- Publication type:
- Article
Feed-Forward Regulation of a Cell Fate Determinant by an RNA-Binding Protein Generates Asymmetry in Yeast.
- Published in:
- Genetics, 2010, v. 185, n. 2, p. 513, doi. 10.1534/genetics.110.113944
- By:
- Publication type:
- Article
IDR2D identifies reproducible genomic interactions.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 6, p. e31, doi. 10.1093/nar/gkaa030
- By:
- Publication type:
- Article
High resolution discovery of chromatin interactions.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 6, p. e35, doi. 10.1093/nar/gkz051
- By:
- Publication type:
- Article
Predicting the impact of non-coding variants on DNA methylation.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 11, p. 1, doi. 10.1093/nar/gkx177
- By:
- Publication type:
- Article
Discovering differential genome sequence activity with interpretable and efficient deep learning.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 8, p. 1, doi. 10.1371/journal.pcbi.1009282
- By:
- Publication type:
- Article
Detection of gene cis-regulatory element perturbations in single-cell transcriptomes.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008789
- By:
- Publication type:
- Article
Control of Transcription by Cell Size.
- Published in:
- PLoS Biology, 2010, v. 8, n. 11, p. 1, doi. 10.1371/journal.pbio.1000523
- By:
- Publication type:
- Article
Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons.
- Published in:
- Nature Neuroscience, 2014, v. 17, n. 8, p. 1046, doi. 10.1038/nn.3757
- By:
- Publication type:
- Article
Saltatory remodeling of Hox chromatin in response to rostrocaudal patterning signals.
- Published in:
- Nature Neuroscience, 2013, v. 16, n. 9, p. 1191, doi. 10.1038/nn.3490
- By:
- Publication type:
- Article
Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity.
- Published in:
- Nature Neuroscience, 2013, v. 16, n. 9, p. 1219, doi. 10.1038/nn.3467
- By:
- Publication type:
- Article
Transcriptional dynamics of murine motor neuron maturation in vivo and in vitro.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33022-4
- By:
- Publication type:
- Article
An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003501
- By:
- Publication type:
- Article
Universal Count Correction for High-Throughput Sequencing.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003494
- By:
- Publication type:
- Article
High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints.
- Published in:
- PLoS Computational Biology, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.pcbi.1002638
- By:
- Publication type:
- Article
Automated Discovery of Functional Generality of Human Gene Expression Programs.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 8, p. 1426, doi. 10.1371/journal.pcbi.0030148
- By:
- Publication type:
- Article
seqgra: principled selection of neural network architectures for genomics prediction tasks.
- Published in:
- Bioinformatics, 2022, v. 38, n. 9, p. 2381, doi. 10.1093/bioinformatics/btac101
- By:
- Publication type:
- Article
Machine learning optimization of peptides for presentation by class II MHCs.
- Published in:
- Bioinformatics, 2021, v. 37, n. 19, p. 3160, doi. 10.1093/bioinformatics/btab131
- By:
- Publication type:
- Article
Antibody complementarity determining region design using high-capacity machine learning.
- Published in:
- Bioinformatics, 2020, v. 36, n. 7, p. 2126, doi. 10.1093/bioinformatics/btz895
- By:
- Publication type:
- Article
DeepLigand: accurate prediction of MHC class I ligands using peptide embedding.
- Published in:
- Bioinformatics, 2019, v. 35, n. 14, p. i278, doi. 10.1093/bioinformatics/btz330
- By:
- Publication type:
- Article
Convolutional neural network architectures for predicting DNA-protein binding.
- Published in:
- Bioinformatics, 2016, v. 32, n. 12, p. i21, doi. 10.1093/bioinformatics/btw255
- By:
- Publication type:
- Article
GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding.
- Published in:
- Bioinformatics, 2016, v. 32, n. 4, p. 490, doi. 10.1093/bioinformatics/btv565
- By:
- Publication type:
- Article
Core transcriptional regulatory circuitry in human hepatocytes.
- Published in:
- Molecular Systems Biology, 2006, v. 2, n. 1, p. E1, doi. 10.1038/msb4100059
- By:
- Publication type:
- Article
Discovering homotypic binding events at high spatial resolution.
- Published in:
- Bioinformatics, 2010, v. 26, n. 24, p. 3028, doi. 10.1093/bioinformatics/btq590
- By:
- Publication type:
- Article
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.
- Published in:
- Bioinformatics, 2006, v. 22, n. 4, p. 423, doi. 10.1093/bioinformatics/bti815
- By:
- Publication type:
- Article
Deconvolving cell cycle expression data with complementary information.
- Published in:
- Bioinformatics, 2004, v. 20, n. suppl_1, p. i23, doi. 10.1093/bioinformatics/bth915
- By:
- Publication type:
- Article
Deconvolving cell cycle expression data with complementary information.
- Published in:
- Bioinformatics, 2004, v. 20, p. i23, doi. 10.1093/bioinformatics/bth915
- By:
- Publication type:
- Article
Small molecule inhibition of ATM kinase increases CRISPR-Cas9 1-bp insertion frequency.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25415-8
- By:
- Publication type:
- Article
Generative modeling of single-cell time series with PRESCIENT enables prediction of cell trajectories with interventions.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23518-w
- By:
- Publication type:
- Article
Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-016-3434-3
- By:
- Publication type:
- Article
High-resolution genetic mapping with pooled sequencing.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 6, p. 1, doi. 10.1186/1471-2105-13-S6-S8
- By:
- Publication type:
- Article
ReadDB Provides Efficient Storage for Mapped Short Reads.
- Published in:
- 2011
- By:
- Publication type:
- Product Review
MARIS: Method for Analyzing RNA following Intracellular Sorting.
- Published in:
- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0089459
- By:
- Publication type:
- Article
Ruler Arrays Reveal Haploid Genomic Structural Variation.
- Published in:
- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043210
- By:
- Publication type:
- Article
Tissue-specific transcriptional regulation has diverged significantly between human and mouse.
- Published in:
- Nature Genetics, 2007, v. 39, n. 6, p. 730, doi. 10.1038/ng2047
- By:
- Publication type:
- Article
Embryonic stem cell-based mapping of developmental transcriptional programs.
- Published in:
- Nature Methods, 2011, v. 8, n. 12, p. 1056, doi. 10.1038/nmeth.1775
- By:
- Publication type:
- Article
Accurate eQTL prioritization with an ensemble-based framework.
- Published in:
- Human Mutation, 2017, v. 38, n. 9, p. 1259, doi. 10.1002/humu.23198
- By:
- Publication type:
- Article
Fast optimal leaf ordering for hierarchical clustering.
- Published in:
- Bioinformatics, 2001, v. 17, p. 22, doi. 10.1093/bioinformatics/17.suppl_1.s22
- By:
- Publication type:
- Article
Polycomb complexes repress developmental regulators in murine embryonic stem cells.
- Published in:
- Nature, 2006, v. 441, n. 7091, p. 349, doi. 10.1038/nature04733
- By:
- Publication type:
- Article
Transcriptional regulatory code of a eukaryotic genome.
- Published in:
- Nature, 2004, v. 431, n. 7004, p. 99, doi. 10.1038/nature02800
- By:
- Publication type:
- Article
A multi-parametric flow cytometric assay to analyze DNA–protein interactions.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 2, p. e38, doi. 10.1093/nar/gks1034
- By:
- Publication type:
- Article
High-throughput mapping of regulatory DNA.
- Published in:
- Nature Biotechnology, 2016, v. 34, n. 2, p. 167, doi. 10.1038/nbt.3468
- By:
- Publication type:
- Article
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape.
- Published in:
- Nature Biotechnology, 2014, v. 32, n. 2, p. 171, doi. 10.1038/nbt.2798
- By:
- Publication type:
- Article
Erratum: High-resolution computational models of genome binding events.
- Published in:
- 2006
- By:
- Publication type:
- Correction notice
High-resolution computational models of genome binding events.
- Published in:
- Nature Biotechnology, 2006, v. 24, n. 8, p. 963, doi. 10.1038/nbt1233
- By:
- Publication type:
- Article
Computational discovery of gene modules and regulatory networks.
- Published in:
- Nature Biotechnology, 2003, v. 21, n. 11, p. 1337
- By:
- Publication type:
- Article
Programmed Mutagenesis Is Universal.
- Published in:
- Theory of Computing Systems, 2002, v. 35, n. 5, p. 483, doi. 10.1007/s00224-002-1044-8
- By:
- Publication type:
- Article
Visualizing complex feature interactions and feature sharing in genomic deep neural networks.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-2957-4
- By:
- Publication type:
- Article