Works matching AU White, Richard Allen

Results: 29

Gestational diabetes mellitus is associated with the neonatal gut microbiota and metabolome.

Published in:

2021

By:

Chen, Ting;
Qin, Yufeng;
Chen, Minjian;
Zhang, Yuqing;
Wang, Xu;
Dong, Tianyu;
Chen, Guanglin;
Sun, Xian;
Lu, Ting;
White III, Richard Allen;
Ye, Peng;
Tun, Hein M.;
Xia, Yankai;
White, Richard Allen 3rd

Publication type:

journal article

The eukaryome of modern microbialites reveals distinct colonization across aquatic ecosystems.

Published in:

NPJ Biofilms & Microbiomes, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41522-024-00547-z

By:

Bonacolta, Anthony M.;
Visscher, Pieter T.;
del Campo, Javier;
White III, Richard Allen

Publication type:

Article

NFixDB (Nitrogen Fixation DataBase)--a comprehensive integrated database for robust 'omics analysis of diazotrophs.

Published in:

NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae063

By:

Bellanger, Madeline;
Figueroa III, Jose L.;
Tiemann, Lisa;
riesen, Maren L. F.;
White III, Richard Allen

Publication type:

Article

Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-67878-7

By:

McClure, Ryan S.;
Lee, Joon-Yong;
Chowdhury, Taniya Roy;
Bottos, Eric M.;
White III, Richard Allen;
Kim, Young-Mo;
Nicora, Carrie D.;
Metz, Thomas O.;
Hofmockel, Kirsten S.;
Jansson, Janet K.;
Song, Hyun-Seob

Publication type:

Article

Meconium microbiome associates with the development of neonatal jaundice.

Published in:

Clinical & Translational Gastroenterology, 2018, v. 9, n. 9, p. 1, doi. 10.1038/s41424-018-0048-x

By:

Dong, Tianyu;
Chen, Ting;
White III, Richard Allen;
Wang, Xu;
Hu, Weiyue;
Liang, Yali;
Zhang, Yuqing;
Lu, Chuncheng;
Chen, Minjian;
Aase, Heidi;
Xia, Yankai

Publication type:

Article

Predicting changes in neutralizing antibody activity for SARS-CoV-2 XBB.1.5 using in silico protein modeling.

Published in:

Frontiers in Virology, 2023, p. 1, doi. 10.3389/fviro.2023.1172027

By:

Ford, Colby T.;
Yasa, Shirish;
Machado, Denis Jacob;
White III, Richard Allen;
Janies, Daniel A.

Publication type:

Article

A marine inducible prophage vB_CibM-P1 isolated from the aerobic anoxygenic phototrophic bacterium Citromicrobium bathyomarinum JL354.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep07118

By:

Qiang Zheng;
Rui Zhang;
Yongle Xu;
White III, Richard Allen;
Yu Wang;
Tingwei Luo;
Nianzhi Jiao

Publication type:

Article

The past, present and future of microbiome analyses.

Published in:

Nature Protocols, 2016, v. 11, n. 11, p. 2049, doi. 10.1038/nprot.2016.148

By:

White, Richard Allen;
Callister, Stephen J;
Moore, Ronald J;
Baker, Erin S;
Jansson, Janet K

Publication type:

Article

Deciphering the microbiome shift during fermentation of medicinal plants.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-49799-2

By:

Köberl, Martina;
Erschen, Sabine;
Etemadi, Mohammad;
White III, Richard Allen;
El-Arabi, Tarek F.;
Berg, Gabriele

Publication type:

Article

Viral Communities of Shark Bay Modern Stromatolites.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01223

By:

White III, Richard Allen;
Wong, Hon L.;
Ruvindy, Rendy;
Neilan, Brett A.;
Burns, Brendan P.

Publication type:

Article

Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2015.01531

By:

White III, Richard Allen;
Chan, Amy M.;
Gavelis, Gregory S.;
Leander, Brian S.;
Brady, Allyson L.;
Slater, Gregory F.;
Lim, Darlene S. S.;
Suttle, Curtis A.;
Zhenfeng Liu;
Ghadouani, Anas

Publication type:

Article

Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00966

By:

White III, Richard Allen;
Power, Ian M.;
Dipple, Gregory M.;
Southam, Gordon;
Suttle, Curtis A.

Publication type:

Article

Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00966

By:

White III, Richard Allen;
Power, Ian Malcolm;
Dipple, Gregory M.;
Southam, Gordon;
Suttle, Curtis A.

Publication type:

Article

Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates.

Published in:

Environmental Microbiology, 2018, v. 20, n. 12, p. 4328, doi. 10.1111/1462-2920.14348

By:

Müller, Oliver;
Bang‐Andreasen, Toke;
White, Richard Allen;
Elberling, Bo;
Taş, Neslihan;
Kneafsey, Timothy;
Jansson, Janet K.;
Øvreås, Lise

Publication type:

Article

MetaCerberus: distributed highly parallelized HMM-based processing for robust functional annotation across the tree of life.

Published in:

Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae119

By:

III, Jose L Figueroa;
Dhungel, Eliza;
Bellanger, Madeline;
Brouwer, Cory R;
III, Richard Allen White

Publication type:

Article

Biosignatures Associated with Freshwater Microbialites.

Published in:

Life (2075-1729), 2020, v. 10, n. 5, p. 66, doi. 10.3390/life10050066

By:

White III, Richard Allen;
Soles, Sarah A.;
Brady, Allyson L.;
Southam, Gordon;
Lim, Darlene S.S.;
Slater, Greg F.

Publication type:

Article

The Complete Genome and Physiological Analysis of the Microbialite-Dwelling Agrococcus pavilionensis sp. nov; Reveals Genetic Promiscuity and Predicted Adaptations to Environmental Stress.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02180

By:

White III, Richard Allen;
Gavelis, Greg;
Soles, Sarah A.;
Gosselin, Emma;
Slater, Greg F.;
Lim, Darlene S. S.;
Leander, Brian;
Suttle, Curtis A.

Publication type:

Article

MerCat2: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from omics data.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae061

By:

Figueroa, Jose L;
Redinbo, Andrew;
Panyala, Ajay;
Colby, Sean;
Friesen, Maren L;
Tiemann, Lisa;
White, Richard Allen

Publication type:

Article

DeGenPrime provides robust primer design and optimization unlocking the biosphere.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae044

By:

Fulghum, Bryan;
Tanker, Sophie H;
White, Richard Allen

Publication type:

Article

Genome-Resolved Metagenomics of Nitrogen Transformations in the Switchgrass Rhizosphere Microbiome on Marginal Lands.

Published in:

Agronomy, 2023, v. 13, n. 5, p. 1294, doi. 10.3390/agronomy13051294

By:

White III, Richard Allen;
Garoutte, Aaron;
Mclachlan, Emily E.;
Tiemann, Lisa K.;
Evans, Sarah;
Friesen, Maren L.

Publication type:

Article

In Situ Non-Destructive Temporal Measurements of the Rhizosphere Microbiome 'Hot-Spots' Using Metaproteomics.

Published in:

Agronomy, 2021, v. 11, n. 11, p. 2248, doi. 10.3390/agronomy11112248

By:

White III, Richard Allen;
Rosnow, Joshua;
Piehowski, Paul D.;
Brislawn, Colin J.;
Moran, James J.

Publication type:

Article

Microbial dark matter filling the niche in hypersaline microbial mats.

Published in:

Microbiome, 2020, v. 8, n. 1, p. N.PAG, doi. 10.1186/s40168-020-00910-0

By:

Wong, Hon Lun;
MacLeod, Fraser I.;
White III, Richard Allen;
Visscher, Pieter T.;
Burns, Brendan P.

Publication type:

Article

Dynamics of archaea at fine spatial scales in Shark Bay mat microbiomes.

Published in:

Scientific Reports, 2017, p. 46160, doi. 10.1038/srep46160

By:

Wong, Hon Lun;
Visscher, Pieter T.;
White III, Richard Allen;
Smith, Daniela-Lee;
Patterson, Molly M.;
Burns, Brendan P.

Publication type:

Article

Homogeneous Cytochrome 579 Is an Octamer That Reacts Too Slowly With Soluble Iron to Be the Initial Iron Oxidase in the Respiratory Chain of Leptospirillum ferriphilum.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.673066

By:

Blake II, Robert C.;
Shively, John E.;
Timkovich, Russell;
White III, Richard Allen

Publication type:

Article

Functional Gene Expression in Shark Bay Hypersaline Microbial Mats: Adaptive Responses.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.560336

By:

Campbell, Matthew A.;
Grice, Kliti;
Visscher, Pieter T.;
Morris, Therese;
Wong, Hon Lun;
White III, Richard Allen;
Burns, Brendan P.;
Coolen, Marco J. L.

Publication type:

Article

Biophysical Breakthroughs Projected for the Phage Therapy of Bacterial Disease.

Published in:

Biophysica, 2024, v. 4, n. 2, p. 195, doi. 10.3390/biophysica4020014

By:

Chambers, James P.;
Aldis, Miranda;
Thomas, Julie A.;
Gonzales, Cara B.;
White III, Richard Allen;
Serwer, Philip

Publication type:

Article

Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 11, p. 2619, doi. 10.1038/s41396-018-0208-8

By:

Wong, Hon Lun;
White, Richard Allen;
Visscher, Pieter T.;
Charlesworth, James C.;
Vázquez-Campos, Xabier;
Burns, Brendan P.

Publication type:

Article

Multiple mechanisms drive phage infection efficiency in nearly identical hosts.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 6, p. 1605, doi. 10.1038/s41396-018-0099-8

By:

Howard-Varona, Cristina;
Hargreaves, Katherine R.;
Solonenko, Natalie E.;
Markillie, Lye Meng;
White, Richard Allen;
Brewer, Heather M.;
Ansong, Charles;
Orr, Galya;
Adkins, Joshua N.;
Sullivan, Matthew B.

Publication type:

Article

Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 1, p. 183, doi. 10.1038/ismej.2015.87

By:

Ruvindy, Rendy;
White III, Richard Allen;
Neilan, Brett Anthony;
Burns, Brendan Paul

Publication type:

Article