Works matching DE "DNA-binding proteins"

Results: 5000

An ancient protein-DNA interaction underlying metazoan sex determination.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 6, p. 442, doi. 10.1038/nsmb.3032

By:

Murphy, Mark W;
Lee, John K;
Rojo, Sandra;
Gearhart, Micah D;
Kurahashi, Kayo;
Banerjee, Surajit;
Loeuille, Guy-André;
Bashamboo, Anu;
McElreavey, Kenneth;
Zarkower, David;
Aihara, Hideki;
Bardwell, Vivian J

Publication type:

Article

Tetrameric Ctp1 coordinates DNA binding and DNA bridging in DNA double-strand-break repair.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 2, p. 158, doi. 10.1038/nsmb.2945

By:

Andres, Sara N;
Appel, C Denise;
Westmoreland, James W;
Williams, Jessica S;
Nguyen, Yvonne;
Robertson, Patrick D;
Resnick, Michael A;
Williams, R Scott

Publication type:

Article

The DNA-binding domain mediates both nuclear and cytosolic functions of p53.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 6, p. 535, doi. 10.1038/nsmb.2829

By:

Follis, Ariele Viacava;
Llambi, Fabien;
Ou, Li;
Baran, Katherine;
Green, Douglas R;
Kriwacki, Richard W

Publication type:

Article

Association of condensin with chromosomes depends on DNA binding by its HEAT-repeat subunits.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 6, p. 560, doi. 10.1038/nsmb.2831

By:

Piazza, Ilaria;
Rutkowska, Anna;
Ori, Alessandro;
Walczak, Marta;
Metz, Jutta;
Pelechano, Vicent;
Beck, Martin;
Haering, Christian H

Publication type:

Article

Sustained active site rigidity during synthesis by human DNA polymerase μ.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 3, p. 253, doi. 10.1038/nsmb.2766

By:

Moon, Andrea F;
Pryor, John M;
Ramsden, Dale A;
Kunkel, Thomas A;
Bebenek, Katarzyna;
Pedersen, Lars C

Publication type:

Article

Prereplication-complex formation: a molecular double take?

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 20, doi. 10.1038/nsmb.2738

By:

Yardimci, Hasan;
Walter, Johannes C

Publication type:

Article

Staufen1 senses overall transcript secondary structure to regulate translation.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 26, doi. 10.1038/nsmb.2739

By:

Ricci, Emiliano P;
Kucukural, Alper;
Cenik, Can;
Mercier, Blandine C;
Singh, Guramrit;
Heyer, Erin E;
Ashar-Patel, Ami;
Peng, Lingtao;
Moore, Melissa J

Publication type:

Article

Structural basis for RNA recognition by a dimeric PPR-protein complex.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1377, doi. 10.1038/nsmb.2710

By:

Ke, Jiyuan;
Chen, Run-Ze;
Ban, Ting;
Zhou, X Edward;
Gu, Xin;
Tan, M H Eileen;
Chen, Chen;
Kang, Yanyong;
Brunzelle, Joseph S;
Zhu, Jian-Kang;
Melcher, Karsten;
Xu, H Eric

Publication type:

Article

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1434, doi. 10.1038/nsmb.2699

By:

Lovci, Michael T;
Ghanem, Dana;
Marr, Henry;
Arnold, Justin;
Gee, Sherry;
Parra, Marilyn;
Liang, Tiffany Y;
Stark, Thomas J;
Gehman, Lauren T;
Hoon, Shawn;
Massirer, Katlin B;
Pratt, Gabriel A;
Black, Douglas L;
Gray, Joe W;
Conboy, John G;
Yeo, Gene W

Publication type:

Article

High-resolution structure of TBP with TAF1 reveals anchoring patterns in transcriptional regulation.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 8, p. 1008, doi. 10.1038/nsmb.2611

By:

Anandapadamanaban, Madhanagopal;
Andresen, Cecilia;
Helander, Sara;
Ohyama, Yoshifumi;
Siponen, Marina I;
Lundström, Patrik;
Kokubo, Tetsuro;
Ikura, Mitsuhiko;
Moche, Martin;
Sunnerhagen, Maria

Publication type:

Article

A ternary AppA-PpsR-DNA complex mediates light regulation of photosynthesis-related gene expression.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 7, p. 859, doi. 10.1038/nsmb.2597

By:

Winkler, Andreas;
Heintz, Udo;
Lindner, Robert;
Reinstein, Jochen;
Shoeman, Robert L;
Schlichting, Ilme

Publication type:

Article

Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 6, p. 740, doi. 10.1038/nsmb.2568

By:

Rajagopalan, Senapathy;
Teter, Sarah J;
Zwart, Petrus H;
Brennan, Richard G;
Phillips, Kevin J;
Kiley, Patricia J

Publication type:

Article

Structure-function analyses of the human SIX1-EYA2 complex reveal insights into metastasis and BOR syndrome.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 4, p. 447, doi. 10.1038/nsmb.2505

By:

Patrick, Aaron N;
Cabrera, Joshua H;
Smith, Anna L;
Chen, Xiaojiang S;
Ford, Heide L;
Zhao, Rui

Publication type:

Article

Entropy controls activity.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 743, doi. 10.1038/nsmb.2361

By:

Montoya, Michelle

Publication type:

Article

ATP binding controls distinct structural transitions of Escherichia coli DNA gyrase in complex with DNA.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 5, p. 538, doi. 10.1038/nsmb.2278

By:

Basu, Aakash;
Schoeffler, Allyn J;
Berger, James M;
Bryant, Zev

Publication type:

Article

An ALS-associated mutation affecting TDP-43 enhances protein aggregation, fibril formation and neurotoxicity.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 7, p. 822, doi. 10.1038/nsmb.2053

By:

Weirui Guo;
Yanbo Chen;
Xiaohong Zhou;
Kar, Amar;
Ray, Payal;
Xiaoping Chen;
Rao, Elizabeth J.;
Mengxue Yang;
Haihong Ye;
Li Zhu;
Jianghong Liu;
Meng Xu;
Yanlian Yang;
Chen Wang;
David Zhang;
Bigio, Eileen H.;
Mesulam, Marsel;
Yan Shen;
Qi Xu;
Kazuo Fushimi

Publication type:

Article

The prospects for designer single-stranded RNA-binding proteins.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 3, p. 256, doi. 10.1038/nsmb.2005

By:

Mackay, Joel P.;
Font, Josep;
Segal, David J.

Publication type:

Article

Mre11-Rad50-Xrs2 and Sae2 promote 5′ strand resection of DNA double-strand breaks.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 12, p. 1478, doi. 10.1038/nsmb.1957

By:

Nicolette, Matthew L.;
Kihoon Lee;
Zhi Guo;
Rani, Mridula;
Chow, Julia M.;
Sang Eun Lee;
Paull, Tanya T.

Publication type:

Article

Molecular basis of FIR-mediated c-myc transcriptional control.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 9, p. 1058, doi. 10.1038/nsmb.1883

By:

Cukier, Cyprian D;
Hollingworth, David;
Martin, Stephen R;
Kelly, Geoff;
Díaz-Moreno, Irene;
Ramos, Andres

Publication type:

Article

Visualizing one-dimensional diffusion of eukaryotic DNA repair factors along a chromatin lattice.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 8, p. 932, doi. 10.1038/nsmb.1858

By:

Gorman, Jason;
Plys, Aaron J.;
Visnapuu, Mari-Liis;
Alani, Eric;
Greene, Eric C.

Publication type:

Article

Corecognition of DNA and a methylated histone tail by the MSL3 chromodomain.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 8, p. 1027, doi. 10.1038/nsmb.1856

By:

Daesung Kim;
Blus, Bartlomiej J.;
Chandra, Vikas;
Pengxiang Huang;
Rastinejad, Fraydoon;
Khorasanizadeh, Sepideh

Publication type:

Article

Kick-sTARting HIV-1 transcription elongation by 7SK snRNP deporTATion.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 8, p. 928, doi. 10.1038/nsmb0810-928

By:

Barboric, Matjaz;
Lenasi, Tina

Publication type:

Article

Loqs and R2D2 act sequentially in the siRNA pathway in Drosophila.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 24, doi. 10.1038/nsmb.1735

By:

Marques, João Trindade;
Kim, Kevin;
Pei-Hsuan Wu;
Alleyne, Trevis M.;
Jafari, Nadereh;
Carthew, Richard W.

Publication type:

Article

Structure of the MLL CXXC domain–DNA complex and its functional role in MLL-AF9 leukemia.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 62, doi. 10.1038/nsmb.1714

By:

Cierpicki, Tomasz;
Risner, Laurie E.;
Grembecka, Jolanta;
Lukasik, Stephen M.;
Popovic, Relja;
Omonkowska, Monika;
Shultis, David D.;
Zeleznik-Le, Nancy J.;
Bushweller, John H.

Publication type:

Article

A conserved activation element in BMP signaling during Drosophila development.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 69, doi. 10.1038/nsmb.1715

By:

Weiss, Alexander;
Charbonnier, Enrica;
Ellertsdóttir, Elín;
Tsirigos, Aristotelis;
Wolf, Christian;
Schuh, Reinhard;
Pyrowolakis, George;
Affolter, Markus

Publication type:

Article

A promiscuous α-helical motif anchors viral hijackers and substrate receptors to the CUL4–DDB1 ubiquitin ligase machinery.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 105, doi. 10.1038/nsmb.1719

By:

Ti Li;
Robert, Eva I.;
van Breugel, Pieter C.;
Strubin, Michel;
Ning Zheng

Publication type:

Article

THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 117, doi. 10.1038/nsmb.1742

By:

Sabogal, Alex;
Lyubimov, Artem Y.;
Corn, Jacob E.;
Berger, James M.;
Rio, Donald C.

Publication type:

Article

Nonspecifically bound proteins spin while diffusing along DNA.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 12, p. 1224, doi. 10.1038/nsmb.1716

By:

Blainey, Paul C.;
Guobin Luo;
Kou, S. C.;
Mangel, Walter F.;
Verdine, Gregory L.;
Biman Bagchi;
X. Sunney Xie

Publication type:

Article

Ubiquitin linkages make a difference.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 12, p. 1209, doi. 10.1038/nsmb1209-1209

By:

Dikic, Ivan;
Dötsch, Volker

Publication type:

Article

Three-dimensional intricacies in protein-DNA recognition and transcriptional control.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 12, p. 1118, doi. 10.1038/nsmb1207-1118

By:

Harrison, Stephen C.

Publication type:

Article

A common means to an end.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 3, p. 176, doi. 10.1038/nsmb0307-176

By:

Haring, Stuart J.;
Wold, Marc S.

Publication type:

Article

RPA-like proteins mediate yeast telomere function.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 3, p. 208, doi. 10.1038/nsmb1205

By:

Gao, Hua;
Cervantes, Rachel B.;
Mandell, Edward K.;
Otero, Joel H.;
Lundblad, Victoria

Publication type:

Article

The FtsK γ domain directs oriented DNA translocation by interacting with KOPS.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 11, p. 965, doi. 10.1038/nsmb1158

By:

Sivanathan, Viknesh;
Allen, Mark D.;
de Bekker, Charissa;
Baker, Rachel;
Arciszewska, Lidia K.;
Freund, Stefan M.;
Bycroft, Mark;
Löwe, Jan;
Sherratt, David J.

Publication type:

Article

Rad4–Rad23 interaction with SWI/SNF links ATP-dependent chromatin remodeling with nucleotide excision repair.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 10, p. 902, doi. 10.1038/nsmb1152

By:

Gong, Feng;
Fahy, Deirdre;
Smerdon, Michael J.

Publication type:

Article

The Swi5–Sfr1 complex stimulates Rhp51/Rad51 - and Dmc1-mediated DNA strand exchange in vitro.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 9, p. 823, doi. 10.1038/nsmb1136

By:

Haruta, Nami;
Kurokawa, Yumiko;
Murayama, Yasuto;
Akamatsu, Yufuko;
Unzai, Satoru;
Tsutsui, Yasuhiro;
Iwasaki, Hiroshi

Publication type:

Article

Research Highlights.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 5, p. 391, doi. 10.1038/nsmb0506-391

By:

Hwa-ping Feng;
Finkelstein, Joshua M.;
Lall, Sabbi;
Montoya, Michelle

Publication type:

Article

Mapping the interaction surface of linker histone H1<sup>0</sup> with the nucleosome of native chromatin in vivo.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 3, p. 250, doi. 10.1038/nsmb1050

By:

Brown, David T.;
Izard, Tina;
Misteli, Tom

Publication type:

Article

A conserved processing mechanism regulates the activity of transcription factors Cubitus interruptus and NF-κB.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 12, p. 1045, doi. 10.1038/nsmb1018

By:

Lin Tian;
Holmgren, Robert A.;
Matouschek, Andreas

Publication type:

Article

MDC1 interacts with Rad51 and facilitates homologous recombination.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 10, p. 902, doi. 10.1038/nsmb991

By:

Zhang, Junran;
Ma, Zhefu;
Treszezamsky, Alejandro;
Powell, Simon N.

Publication type:

Article

(CAG)<sub>n</sub>-hairpin DNA binds to Msh2–Msh3 and changes properties of mismatch recognition.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 8, p. 663, doi. 10.1038/nsmb965

By:

Owen, Barbara A. L.;
Zungyoon Yang;
Maoyi Lai;
Gajek, Maciez;
Badger II, John D.;
Hayes, Jeffrey J.;
Edelmann, Winfried;
Kucherlapati, Raju;
Wilson, Teresa M.;
McMurray, Cynthia T.

Publication type:

Article

ß-catenin directly displaces Groucho/TLE repressors from Tcf/Lef in Wnt-mediated transcription activation.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 4, p. 364, doi. 10.1038/nsmb912

By:

Daniels, Danette L;
Weis, William I

Publication type:

Article

Insights into hRPA32 C-terminal domain-mediated assembly of the simian virus 40 replisome.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 4, p. 332, doi. 10.1038/nsmb916

By:

Arunkumar, Alphonse I;
Klimovich, Vitaly;
Jiang, Xiaohua;
Ott, Robert D;
Mizoue, L;
Fanning, Ellen;
Chazin, Walter J

Publication type:

Article

CBFß allosterically regulates the Runx1 Runt domain via a dynamic conformational equilibrium.

Published in:

Nature Structural & Molecular Biology, 2004, v. 11, n. 9, p. 901, doi. 10.1038/nsmb819

By:

Jiangli Yan;
Yizhou Liu;
Lukasik, Stephen M.;
Speck, Nancy A.;
Bushweller, John H.

Publication type:

Article

Sequence-specific DNA binding determined by contacts outside the helix-turn-helix motif of the ParB homolog KorB.

Published in:

Nature Structural & Molecular Biology, 2004, v. 11, n. 7, p. 656, doi. 10.1038/nsmb773

By:

Khare, Dheeraj;
Ziegelin, Günter;
Lanka, Erich;
Heinemann, Udo

Publication type:

Article

Multi-tissue characterization of the constitutive heterochromatin proteome in Drosophila identifies a link between satellite DNA organization and transposon repression.

Published in:

PLoS Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1371/journal.pbio.3002984

By:

Chavan, Ankita;
Skrutl, Lena;
Uliana, Federico;
Pfister, Melanie;
Brändle, Franziska;
Tirian, Laszlo;
Baptista, Delora;
Handler, Dominik;
Burke, David;
Sintsova, Anna;
Beltrao, Pedro;
Brennecke, Julius;
Jagannathan, Madhav

Publication type:

Article

PRDM9 drives the location and rapid evolution of recombination hotspots in salmonid fish.

Published in:

PLoS Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1371/journal.pbio.3002950

By:

Raynaud, Marie;
Sanna, Paola;
Joseph, Julien;
Clément, Julie;
Imai, Yukiko;
Lareyre, Jean-Jacques;
Laurent, Audrey;
Galtier, Nicolas;
Baudat, Frédéric;
Duret, Laurent;
Gagnaire, Pierre-Alexandre;
de Massy, Bernard

Publication type:

Article

Chromatin remodeller Chd7 is developmentally regulated in the neural crest by tissue-specific transcription factors.

Published in:

PLoS Biology, 2024, v. 22, n. 10, p. 1, doi. 10.1371/journal.pbio.3002786

By:

Williams, Ruth M.;
Taylor, Guneş;
Ling, Irving T. C.;
Candido-Ferreira, Ivan;
Fountain, Daniel M.;
Mayes, Sarah;
Ateş-Kalkan, Perihan Seda;
Haug, Julianna O.;
Price, Andrew J.;
McKinney, Sean A.;
Bozhilovh, Yavor K.;
Tyser, Richard C. V.;
Srinivas, Shankar;
Hughes, Jim R.;
Sauka-Spengler, Tatjana

Publication type:

Article

The Machado–Joseph Disease Deubiquitinase Ataxin-3 Regulates the Stability and Apoptotic Function of p53.

Published in:

PLoS Biology, 2016, v. 14, n. 11, p. 1, doi. 10.1371/journal.pbio.2000733

By:

Liu, Hongmei;
Li, Xiaoling;
Ning, Guozhu;
Zhu, Shu;
Ma, Xiaolu;
Liu, Xiuli;
Liu, Chunying;
Huang, Min;
Schmitt, Ina;
Wüllner, Ullrich;
Niu, Yamei;
Guo, Caixia;
Wang, Qiang;
Tang, Tie-Shan

Publication type:

Article

Corn Silk Induced Cyclooxygenase-2 in Murine Macrophages.

Published in:

Bioscience, Biotechnology & Biochemistry, 2005, v. 69, n. 10, p. 1848, doi. 10.1271/bbb.69.1848

By:

Kim, Kyung A.;
Hyun-Hee Shin;
Sang Kyu Choi;
Hye-Seon Choi

Publication type:

Article

Black Tea Theaflavins Suppress Dioxin-Induced Transformation of the Aryl Hydrocarbon Receptor.

Published in:

Bioscience, Biotechnology & Biochemistry, 2005, v. 69, n. 5, p. 883, doi. 10.1271/bbb.69.883

By:

Fukuda, Itsuko;
Sakane, Iwao;
Yabushita, Yoshiyuki;
Sawamura, Shin-ichi;
Kanazawa, Kazuki;
Ashida, Hitoshi

Publication type:

Article