Works matching DE "EXONS (Genetics)"

Results: 4644

Exon-intron circular RNAs regulate transcription in the nucleus.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 3, p. 256, doi. 10.1038/nsmb.2959

By:

Li, Zhaoyong;
Huang, Chuan;
Bao, Chun;
Chen, Liang;
Lin, Mei;
Wang, Xiaolin;
Zhong, Guolin;
Yu, Bin;
Hu, Wanchen;
Dai, Limin;
Zhu, Pengfei;
Chang, Zhaoxia;
Wu, Qingfa;
Zhao, Yi;
Jia, Ya;
Xu, Ping;
Liu, Huijie;
Shan, Ge

Publication type:

Article

Mechanisms for U2AF to define 3′ splice sites and regulate alternative splicing in the human genome.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 11, p. 997, doi. 10.1038/nsmb.2906

By:

Shao, Changwei;
Yang, Bo;
Wu, Tongbin;
Huang, Jie;
Tang, Peng;
Zhou, Yu;
Zhou, Jie;
Qiu, Jinsong;
Jiang, Li;
Li, Hairi;
Chen, Geng;
Sun, Hui;
Zhang, Yi;
Denise, Alain;
Zhang, Dong-Er;
Fu, Xiang-Dong

Publication type:

Article

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 4, p. 423, doi. 10.1038/nsmb.2799

By:

Lu, Xinyi;
Sachs, Friedrich;
Ramsay, LeeAnn;
Jacques, Pierre-Étienne;
Göke, Jonathan;
Bourque, Guillaume;
Ng, Huck-Hui

Publication type:

Article

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1434, doi. 10.1038/nsmb.2699

By:

Lovci, Michael T;
Ghanem, Dana;
Marr, Henry;
Arnold, Justin;
Gee, Sherry;
Parra, Marilyn;
Liang, Tiffany Y;
Stark, Thomas J;
Gehman, Lauren T;
Hoon, Shawn;
Massirer, Katlin B;
Pratt, Gabriel A;
Black, Douglas L;
Gray, Joe W;
Conboy, John G;
Yeo, Gene W

Publication type:

Article

A complex network of factors with overlapping affinities represses splicing through intronic elements.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 1, p. 36, doi. 10.1038/nsmb.2459

By:

Wang, Yang;
Xiao, Xinshu;
Zhang, Jianming;
Choudhury, Rajarshi;
Robertson, Alex;
Li, Kai;
Ma, Meng;
Burge, Christopher B;
Wang, Zefeng

Publication type:

Article

New functions for DNA modifications by TET-JBP.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1061, doi. 10.1038/nsmb.2437

By:

Huang, Yun;
Rao, Anjana

Publication type:

Article

Intimate liaison with SR proteins brings exon junction complexes to unexpected places.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 12, p. 1209, doi. 10.1038/nsmb.2454

By:

Mühlemann, Oliver

Publication type:

Article

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1124, doi. 10.1038/nsmb.2420

By:

Saulière, Jérôme;
Murigneux, Valentine;
Wang, Zhen;
Marquenet, Emélie;
Barbosa, Isabelle;
Le Tonquèze, Olivier;
Audic, Yann;
Paillard, Luc;
Crollius, Hugues Roest;
Le Hir, Hervé

Publication type:

Article

Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 983, doi. 10.1038/nsmb.2380

By:

Barbosa, Isabelle;
Haque, Nazmul;
Fiorini, Francesca;
Barrandon, Charlotte;
Tomasetto, Catherine;
Blanchette, Marco;
Le Hir, Hervé

Publication type:

Article

Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 1044, doi. 10.1038/nsmb.2377

By:

Wang, Yang;
Ma, Meng;
Xiao, Xinshu;
Wang, Zefeng

Publication type:

Article

5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 1037, doi. 10.1038/nsmb.2372

By:

Khare, Tarang;
Pai, Shraddha;
Koncevicius, Karolis;
Pal, Mrinal;
Kriukiene, Edita;
Liutkeviciute, Zita;
Irimia, Manuel;
Jia, Peixin;
Ptak, Carolyn;
Xia, Menghang;
Tice, Raymond;
Tochigi, Mamoru;
Moréra, Solange;
Nazarians, Anaies;
Belsham, Denise;
Wong, Albert H C;
Blencowe, Benjamin J;
Wang, Sun Chong;
Kapranov, Philipp;
Kustra, Rafal

Publication type:

Article

The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3? end.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 5, p. 498, doi. 10.1038/nsmb.2287

By:

Melero, Roberto;
Buchwald, Gretel;
Castaño, Raquel;
Raabe, Monika;
Gil, David;
Lázaro, Melisa;
Urlaub, Henning;
Conti, Elena;
Llorca, Oscar

Publication type:

Article

The structure of the ASAP core complex reveals the existence of a Pinin-containing PSAP complex.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 4, p. 378, doi. 10.1038/nsmb.2242

By:

Murachelli, Andrea Giovanni;
Ebert, Judith;
Basquin, Claire;
Le Hir, Hervé;
Conti, Elena

Publication type:

Article

Concentration-dependent control of pyruvate kinase M mutually exclusive splicing by hnRNP proteins.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 3, p. 346, doi. 10.1038/nsmb.2219

By:

Chen, Mo;
David, Charles J;
Manley, James L

Publication type:

Article

Molecular basis of purine-rich RNA recognition by the human SR-like protein Tra2-β1.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 4, p. 443, doi. 10.1038/nsmb.2001

By:

Cléry, Antoine;
Jayne, Sandrine;
Benderska, Natalya;
Dominguez, Cyril;
Stamm, Stefan;
Allain, Frédéric H.-T.

Publication type:

Article

Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 3, p. 337, doi. 10.1038/nsmb.1995

By:

Saint-André, Violaine;
Batsché, Eric;
Rachez, Christophe;
Muchardt, Christian

Publication type:

Article

RNA secondary structure in mutually exclusive splicing.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 2, p. 159, doi. 10.1038/nsmb.1959

By:

Yun Yang;
Leilei Zhan;
Wenjing Zhang;
Feng Sun;
Wenfeng Wang;
Nan Tian;
Jingpei Bi;
Haitao Wang;
Dike Shi;
Yajian Jiang;
Yaozhou Zhang;
Yongfeng Jin

Publication type:

Article

Reciprocal intronic and exonic histone modification regions in humans.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 12, p. 1495, doi. 10.1038/nsmb.1924

By:

Huff, Jason T.;
Plocik, Alex M.;
Guthrie, Christine;
Yamamoto, Keith R.

Publication type:

Article

The exon junction complex differentially marks spliced junctions.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 10, p. 1269, doi. 10.1038/nsmb.1890

By:

Saulière, Jérôme;
Haque, Nazmul;
Harms, Scot;
Barbosa, Isabelle;
Blanchette, Marco;
Le Hir, Hervé

Publication type:

Article

Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 9, p. 1114, doi. 10.1038/nsmb.1881

By:

Llorian, Miriam;
Schwartz, Schraga;
Clark, Tyson A;
Hollander, Dror;
Tan, Lit-Yeen;
Spellman, Rachel;
Gordon, Adele;
Schweitzer, Anthony C;
de la Grange, Pierre;
Ast, Gil;
Smith, Christopher W J

Publication type:

Article

Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 8, p. 1030, doi. 10.1038/nsmb.1841

By:

Taft, Ryan J.;
Simons, Cas;
Nahkuri, Satu;
Oey, Harald;
Korbie, Darren J.;
Mercer, Timothy R.;
Holst, Jeff;
Ritchie, William;
Wong, Justin J.-L.;
Rasko, John E. J.;
Rokhsar, Daniel S.;
Degnan, Bernard M.;
Mattick, John S.

Publication type:

Article

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 7, p. 909, doi. 10.1038/nsmb.1838

By:

König, Julian;
Zarnack, Kathi;
Rot, Gregor;
Curk, Tomaž;
Kayikci, Melis;
Zupan, Blaž;
Turner, Daniel J.;
Luscombe, Nicholas M.;
Ule, Jernej

Publication type:

Article

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 2, p. 173, doi. 10.1038/nsmb.1745

By:

Zisoulis, Dimitrios G.;
Lovci, Michael T.;
Wilbert, Melissa L.;
Hutt, Kasey R.;
Liang, Tiffany Y.;
Pasquinelli, Amy E.;
Yeo, Gene W.

Publication type:

Article

Rates of in situ transcription and splicing in large human genes.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 11, p. 1128, doi. 10.1038/nsmb.1666

By:

Singh, Jarnail;
Padgett, Richard A.

Publication type:

Article

Splice site strength–dependent activity and genetic buffering by poly-G runs.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 10, p. 1094, doi. 10.1038/nsmb.1661

By:

Xinshu Xiao;
Zefeng Wang;
Minyoung Jang;
Razvan Nutiu;
Eric T. Wang;
Burge, Christopher B.

Publication type:

Article

Cancer-associated regulation of alternative splicing.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 6, p. 670, doi. 10.1038/nsmb.1608

By:

Venables, Julian P.;
Klinck, Roscoe;
Koh, ChuShin;
Gervais-Bird, Julien;
Bramard, Anne;
Inkel, Lyna;
Durand, Mathieu;
Couture, Sonia;
Froehlich, Ulrike;
Lapointe, Elvy;
Lucier, Jean-François;
Thibault, Philippe;
Rancourt, Claudine;
Tremblay, Karine;
Prinos, Panagiotis;
Chabot, Benoit;
Elela, Sherif Abou

Publication type:

Article

A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 5, p. 541, doi. 10.1038/nsmb.1588

By:

Hammond, Ming C.;
Wachter, Andreas;
Breaker, Ronald R.

Publication type:

Article

Polyglutamine disruption of the huntingtin exon 1 N terminus triggers a complex aggregation mechanism.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 4, p. 380, doi. 10.1038/nsmb.1570

By:

Thakur, Ashwani K.;
Jayaraman, Murali;
Mishra, Rakesh;
Thakur, Monika;
Chellgren, Veronique M.;
Byeon, In-Ja L.;
Anjum, Dalaver H.;
Kodali, Ravindra;
Creamer, Trevor P.;
Conway, James F.;
Gronenborn, Angela M.;
Wetzel, Ronald

Publication type:

Article

Nonsense-mediated mRNA decay (NMD) mechanisms.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 2, p. 107, doi. 10.1038/nsmb.1550

By:

Brogna, Saverio;
Wen, Jikai

Publication type:

Article

Structural basis for exon recognition by a group II intron.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 11, p. 1221, doi. 10.1038/nsmb.1509

By:

Toor, Navtej;
Rajashankar, Kanagalaghatta;
Keating, Kevin S.;
Pyle, Anna Marie

Publication type:

Article

A new, leaner and meaner bacterial organelle.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 9, p. 897, doi. 10.1038/nsmb0908-897

By:

Heinhorst, Sabine;
Cannon, Gordon C.

Publication type:

Article

Polypyrimidine tract binding protein controls the transition from exon definition to an intron defined spliceosome.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 2, p. 183, doi. 10.1038/nsmb.1375

By:

Sharma, Shalini;
Kohlstaedt, Lori A.;
Damianov, Andrey;
Rio, Donald C.;
Black, Douglas L.

Publication type:

Article

A protein-based EM label for RNA identifies the location of exons in spliceosomes.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 2, p. 213, doi. 10.1038/nsmb.1378

By:

Alcid, Eric A.;
Jurica, Melissa S.

Publication type:

Article

A regulator of Dscam mutually exclusive splicing fidelity.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 12, p. 1134, doi. 10.1038/nsmb1339

By:

Olson, Sara;
Blanchette, Marco;
Park, Jung;
Savva, Yiannis;
Yeo, Gene W.;
Yeakley, Joanne M.;
Rio, Donald C.;
Graveley, Brenton R.

Publication type:

Article

RNA-binding proteins switch gears to drive alternative splicing in neurons.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 7, p. 577, doi. 10.1038/nsmb0707-577

By:

Grabowski, Paula J.

Publication type:

Article

Interaction with the BRCA2 C terminus protects RAD51–DNA filaments from disassembly by BRC repeats.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 6, p. 1, doi. 10.1038/nsmb1251

By:

Davies, Owen Richard;
Pellegrini, Luca

Publication type:

Article

The gene encoding the splicing factor SF2/ASF is a proto-oncogene.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 3, p. 185, doi. 10.1038/nsmb1209

By:

Karni, Rotem;
de Stanchina, Elisa;
Lowe, Scott W.;
Sinha, Rahul;
Mu, David;
Krainer, Adrian R.

Publication type:

Article

Cotranscriptional splicing regulation: it's not just about speed.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 11, p. 952, doi. 10.1038/nsmb1106-952

By:

Lynch, Kristen W.

Publication type:

Article

An exonic splicing silencer represses spliceosome assembly after ATP-dependent exon recognition.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 10, p. 937, doi. 10.1038/nsmb1149

By:

House, Amy E.;
Lynch, Kristen W.

Publication type:

Article

Splicing fidelity revisited.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 6, p. 472, doi. 10.1038/nsmb0606-472

By:

Query, Charles C;
Konarska, Maria M

Publication type:

Article

Exon ligation is proofread by the DExD/H-box ATPase Prp22p.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 6, p. 482, doi. 10.1038/nsmb1093

By:

Mayas, Rabiah M;
Maita, Hiroshi;
Staley, Jonathan P

Publication type:

Article

Please hold—the next available exon will be right with you.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 5, p. 385, doi. 10.1038/nsmb0506-385

By:

Neugebauer, Karla M

Publication type:

Article

EJC-independent degradation of nonsense immunoglobulin-μ mRNA depends on 3′ UTR length.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 5, p. 462, doi. 10.1038/nsmb1081

By:

Bühler, Marc;
Steiner, Silvia;
Mohn, Fabio;
Paillusson, Alexandra;
Mühlemann, Oliver

Publication type:

Article

eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay.

Published in:

Nature Structural & Molecular Biology, 2004, v. 11, n. 4, p. 346, doi. 10.1038/nsmb750

By:

Shibuya, Toshiharu;
Tange, Thomas &Olsash;;
Sonenberg, Nahum;
Moore, Melissa J.

Publication type:

Article

Molecular Cloning and Expression Analysis of Two Hepcidin Genes from Olive Flounder Paralichthys olivaceus.

Published in:

Bioscience, Biotechnology & Biochemistry, 2005, v. 69, n. 7, p. 1411, doi. 10.1271/bbb.69.1411

By:

Young-Ok Kim;
Suhee Hong;
Bo-Hye Nam;
Jeong-Ho Lee;
Kyung-Kil Kim;
Sang-Jun Lee

Publication type:

Article

DNA sequence evolution in fast evolving mitochondrial DNA nad1 exons in Geraniaceae and Plantaginaceae.

Published in:

Taxon, 2006, v. 55, n. 4, p. 887, doi. 10.2307/25065683

By:

Bakker, Freek T.;
Brema, Floris;
Merckx, Vincent

Publication type:

Article

The ScAACT1 gene at the Q locus as a candidate for increased aluminum tolerance in rye ( Secale cereale L.).

Published in:

Molecular Breeding, 2012, v. 30, n. 2, p. 845, doi. 10.1007/s11032-011-9668-5

By:

Silva-Navas, J.;
Benito, C.;
Téllez-Robledo, B.;
Abd El-Moneim, D.;
Gallego, F.

Publication type:

Article

A new multiplex PCR test for the determination of Vrn- B1 alleles in bread wheat ( Triticum aestivum L.).

Published in:

Molecular Breeding, 2012, v. 30, n. 1, p. 317, doi. 10.1007/s11032-011-9621-7

By:

Milec, Zbyněk;
Tomková, Lenka;
Sumíková, Taťána;
Pánková, Kateřina

Publication type:

Article

Waxy strains of three amaranth grains raised by different mutations in the coding region.

Published in:

Molecular Breeding, 2010, v. 25, n. 4, p. 623, doi. 10.1007/s11032-009-9360-1

By:

Young-Jun Park;
Nemoto, Kazuhiro;
Nishikawa, Tomotaro;
Matsushima, Kenichi;
Minami, Mineo;
Kawase, Makoto

Publication type:

Article

Association of −394C>G and −420C>G polymorphisms in the RETN gene with T2DM and CHD and a new potential SNP might be exist in exon 3 of RETN gene in Chinese.

Published in:

Molecular & Cellular Biochemistry, 2009, v. 330, n. 1/2, p. 31, doi. 10.1007/s11010-009-0097-2

By:

Shuguang Chi;
Cailian Lan;
Sizhong Zhang;
Hekun Liu;
Xizhen Wang;
Yuanzhong Chen;
Xuexiang Chen;
Suyun Chen;
Wei Zhang

Publication type:

Article