Works matching DE "BINDING sites"

Results: 5000

A comprehensive antigen-antibody complex database unlocking insights into interaction interface.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.104934

By:

Yuwei Zhou;
Wenwen Liu;
Ziru Huang;
Yushu Gou;
Siqi Liu;
Lixu Jiang;
Yue Yang;
Jian Huang

Publication type:

Article

The lncrna HMMR-AS1 promotes the malignant progression of ovarian cancer cells by regulating the miR-627-3p/PTN axis.

Published in:

Journal of Ovarian Research, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13048-025-01691-6

By:

He, Jiaren;
Tian, Fei;
Li, Jie;
Zhang, Yunxia;
Chu, Zhaoping

Publication type:

Article

Role of the CTCF binding site in Human T-Cell Leukemia Virus-1 pathogenesis.

Published in:

PLoS Pathogens, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.ppat.1012293

By:

Joseph, Ancy;
Cheng, Xiaogang;
Harding, John;
Al-Saleem, Jacob;
Green, Patrick;
Griffith, Malachi;
Veis, Deborah;
Rauch, Daniel A.;
Ratner, Lee

Publication type:

Article

In-silico Study of Molecular Docking and Dynamics Simulations for N-Substituted Thiazolidinones Derived from (R)-Carvone Targeting PPAR-γ Protein: Synthesis and Characterization.

Published in:

Polycyclic Aromatic Compounds, 2025, v. 45, n. 4, p. 619, doi. 10.1080/10406638.2024.2415351

By:

Riadi, Yassine;
Razzak Mahmood, Ammar A.;
Geesi, Mohammed H.;
Oubella, Ali

Publication type:

Article

The identification of XPR1 as a voltage- and phosphate-activated phosphate-permeable ion channel.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59678-2

By:

Wu, Hongjiang;
Sun, Liang;
Huo, Tong;
Wensel, Theodore G.;
Horrigan, Frank T.;
Wang, Zhao

Publication type:

Article

Correction to: A single upstream mutation of whiB7 underlies amikacin and clarithromycin resistance in Mycobacterium abscessusFree.

Published in:: 2025
Publication type:: Correction Notice

ciRS-7 expression is epigenetically regulated in cancer cells across human adenocarcinomas.

Published in:

PLoS Genetics, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.pgen.1011726

By:

Paasch, Thea Petersen;
Jarlstad Olesen, Morten Tobias;
García-Rodríguez, Juan Luis;
Assmus, Adrienne M.;
Fenton, Robert A.;
Kjems, Jørgen;
Hager, Henrik;
Kristensen, Lasse Sommer

Publication type:

Article

Genome-wide insights into selection signatures for transcription factor binding sites in cattle ROH regions.

Published in:

Mammalian Genome, 2025, v. 36, n. 2, p. 541, doi. 10.1007/s00335-025-10113-3

By:

Nayak, Sonali Sonejita;
Panigrahi, Manjit;
Dutt, Triveni

Publication type:

Article

Inhibition of Mangiferin on Tyrosinase Activity and Its Mechanism.

Published in:

Journal of Chinese Institute of Food Science & Technology / Zhongguo Shipin Xuebao, 2025, v. 25, n. 3, p. 157, doi. 10.16429/j.1009-7848.2025.03.016

By:

SU Dongyu;
LIU Yi;
ZHANG Yingxin;
BAN Chenyu;
ZHOU Suzhen;
FAN Jinbo

Publication type:

Article

Inhibitory Effect of Three Flavonoids on Xanthine Oxidase Activity.

Published in:

Journal of Chinese Institute of Food Science & Technology / Zhongguo Shipin Xuebao, 2025, v. 25, n. 3, p. 104, doi. 10.16429/j.1009-7848.2025.03.011

By:

ZHANG Yingxin;
BAN Chenyu;
SU Dongyu;
LIU Yi;
ZHOU Suzhen;
FAN Jinbo

Publication type:

Article

A new labdane diterpenoid, in vitro and in silico cytotoxicity, and protease inhibitory effects of phytochemicals from Juniperus polycarposK. Koch leaves.

Published in:

Natural Product Research, 2025, v. 39, n. 11, p. 3053, doi. 10.1080/14786419.2024.2323542

By:

Naderian, Moslem;
Hafez Ghoran, Salar;
Abdjan, Muhammad Ikhlas;
Sabahi, Zahra;
Moein, Soheila;
Jassbi, Amir Reza;
Moein, Mahmoodreza

Publication type:

Article

Colchicine Binding Site Tubulin Inhibitors Impair Vincristine-Resistant Neuroblastoma Cell Function.

Published in:

Molecules, 2025, v. 30, n. 10, p. 2186, doi. 10.3390/molecules30102186

By:

Reed, Cinthia N.;
Garrison, Kaylee B.;
Thammathong, Joshua;
Cinatl Jr., Jindrich;
Michaelis, Martin;
Banerjee, Souvik;
Weissmiller, April M.

Publication type:

Article

Functional Characterization of Anthocyanin Biosynthesis-Related Dihydroflavonol 4-reductase (DFR) Genes in Blueberries (Vaccinium corymbosum).

Published in:

Plants (2223-7747), 2025, v. 14, n. 10, p. 1449, doi. 10.3390/plants14101449

By:

Zhang, Yongyan;
Guo, Sijian;
Zhang, Zening;
Li, Ruide;
Du, Shitao;
Hao, Siyi;
Cheng, Chunzhen

Publication type:

Article

Attenuating Mutations in Usutu Virus: Towards Understanding Orthoflavivirus Virulence Determinants and Live Attenuated Vaccine Design.

Published in:

Vaccines, 2025, v. 13, n. 5, p. 495, doi. 10.3390/vaccines13050495

By:

Duyvestyn, Johanna M.;
Bredenbeek, Peter J.;
Gruters, Marie J.;
Tas, Ali;
Nelemans, Tessa;
Kikkert, Marjolein;
van Hemert, Martijn J.

Publication type:

Article

Quorum Sensing in Chromobacterium subtsugae ATCC 31532 (Formerly Chromobacterium violaceum ATCC 31532): Transcriptomic and Genomic Analyses.

Published in:

Microorganisms, 2025, v. 13, n. 5, p. 1021, doi. 10.3390/microorganisms13051021

By:

Deryabin, Dmitry G.;
Inchagova, Ksenia S.;
Nikonorova, Eugenia R.;
Karimov, Ilshat F.;
Duskaev, Galimzhan K.

Publication type:

Article

Genome-wide identification and characterization of NBS-LRR gene family in tobacco (Nicotiana benthamiana).

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-03507-5

By:

Zhu, Lei;
Huang, Changjun;
Yuan, Cheng;
Liu, Yong;
Yu, Haiqin;
Long, Yan;
Zeng, Jianmin

Publication type:

Article

Identification and characterization of a dsRNA-degrading nuclease CmdsRNase2 influencing RNAi efficiency in the rice leaffolder Cnaphalocrocis medinalis.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00888-5

By:

Wang, Xin;
Du, Juan;
Li, Shangwei;
Li, Jiajing;
Zha, Renming

Publication type:

Article

Advanced modeling of salt-inducible kinase (SIK) inhibitors incorporating protein flexibility through molecular dynamics and cross-docking.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-03699-w

By:

Valdés-Albuernes, Jorge Luis;
Díaz-Pico, Erbio;
Alfaro, Sergio;
Caballero, Julio

Publication type:

Article

The Study of Regioselective Acylation of Geniposide by Using Whole-Cell Biocatalysts in Organic Solvents.

Published in:

Catalysts (2073-4344), 2025, v. 15, n. 5, p. 428, doi. 10.3390/catal15050428

By:

Yang, Rongling;
Huang, Ziling;
Zhao, Xiangjie;
Luo, Hongzhen;
Tong, Yuli;
Li, Xiaoyan;
Zhu, Chun;
Wang, Yu;
Sun, Yang

Publication type:

Article

High Affinity Aptamers and Their Specificity for Azaspiracid-2 Using Capture-SELEX.

Published in:

Marine Drugs, 2025, v. 23, n. 5, p. 183, doi. 10.3390/md23050183

By:

Yang, Jiaping;
Li, Xinhao;
Sun, Weiqin;
Cui, Yunyi;
Chen, Han;
Yang, Yao;
Sun, Mingjuan;
Wang, Lianghua

Publication type:

Article

A promising perspective to boost the utilizability of oil bodies: Moderate regulation and modification of interface.

Published in:

Comprehensive Reviews in Food Science & Food Safety, 2025, v. 24, n. 3, p. 1, doi. 10.1111/1541-4337.70145

By:

Zhang, Shan;
McClements, David Julian;
Zheng, Ruofan;
Yu, Xiao;
Sun, Zhida;
Xie, Bijun;
Chen, Yashu;
Deng, Qianchun

Publication type:

Article

Impedimetric Detection of Breast Cancer‐Related BRCA1 Gene Using Molecular Imprinted Polymer Modified ITO Electrode.

Published in:

Polymers for Advanced Technologies, 2025, v. 36, n. 5, p. 1, doi. 10.1002/pat.70189

By:

Majd, Samira Mansouri;
Mirzapour, Fatemeh;
Shamsipur, Mojtaba

Publication type:

Article

PAX3 Regulatory Signatures and Gene Targets in Melanoma Cells.

Published in:

Genes, 2025, v. 16, n. 5, p. 577, doi. 10.3390/genes16050577

By:

Moore, Stephen P. G.;
Ganesh Krishnan, Shripushkar;
Jaswanth Kothari, Rutu;
Prince, Noah B.;
Kenny, Colin;
Zhang, Chao;
Lang, Deborah

Publication type:

Article

Genome Editing of the qPL6 Promoter Creates Novel Alleles for High-Yielding Rice.

Published in:

Rice (19398425), 2025, v. 18, n. 1, p. 1, doi. 10.1186/s12284-025-00804-5

By:

Zhang, Shuwei;
Qin, Bin;
Zou, Yiting;
Bian, Zhong;
Jin, Guangyang;
Yang, Weitao;
Cao, Dongping;
Zhuang, Wenshu;
Ma, Bin;
Liu, Jiyun;
He, Zuhua;
Liu, Qiaoquan;
Zhang, Lin

Publication type:

Article

NAC1/ACOX2 Axis as a Novel Therapeutic Target for Endometriosis-Related Ovarian Neoplasms.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4938, doi. 10.3390/ijms26104938

By:

Sonia, Shahataj Begum;
Nakayama, Kentaro;
Razia, Sultana;
Nakayama, Naomi;
Ishikawa, Masako;
Yamashita, Hitomi;
Kanno, Kosuke;
Takeshita, Haruo;
Zahan, Umme Farzana;
Sohel, Hasibul Islam;
Kyo, Satoru

Publication type:

Article

Genome-Wide Characterization of WRKY Gene Family in Camellia chekiangoleosa Identifies Potential Regulatory Components in Pigment Biosynthesis Pathways.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4622, doi. 10.3390/ijms26104622

By:

Liu, Zhenyu;
Peng, Yixuan;
Qu, Yanshu;
Huang, Bin;
Gong, Chun;
Wen, Qiang

Publication type:

Article

A Novel KGD-Based αIIbβ3 Antagonist Prevents Arterial Thrombosis While Preserving Hemostasis and Avoiding Thrombocytopenia.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4530, doi. 10.3390/ijms26104530

By:

Kuo, Yu-Ju;
Chung, Ching-Hu;
Chen, Chun-Chao;
Liu, Ju-Chi;
Chiou, Kuan-Rau;
Sheu, Joen-Rong;
Chuang, Woei-Jer;
Huang, Tur-Fu

Publication type:

Article

DNA‐Binding Properties of Non‐Intercalating Water‐Soluble Organometallic Ir(III) Luminophores.

Published in:

Chemistry - A European Journal, 2025, v. 31, n. 30, p. 1, doi. 10.1002/chem.202500290

By:

Alkhaibari, Ibrahim S.;
Horton, Peter N.;
Coles, Simon J.;
Buurma, Niklaas J.;
Pope, Simon J. A.

Publication type:

Article

Structure of a prokaryotic fumarate transporter reveals the architecture of the SLC26 family.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 803, doi. 10.1038/nsmb.3091

By:

Geertsma, Eric R;
Chang, Yung-Ning;
Shaik, Farooque R;
Neldner, Yvonne;
Pardon, Els;
Steyaert, Jan;
Dutzler, Raimund

Publication type:

Article

Linker Nups connect the nuclear pore complex inner ring with the outer ring and transport channel.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 774, doi. 10.1038/nsmb.3084

By:

Fischer, Jessica;
Teimer, Roman;
Amlacher, Stefan;
Kunze, Ruth;
Hurt, Ed

Publication type:

Article

SEC-uring membrane fusion: a sneak peek at SNARE-complex assembly driven by Sec1-Munc18 proteins.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 756, doi. 10.1038/nsmb.3094

By:

Collins, Brett M;
Martin, Jennifer L

Publication type:

Article

Allosteric enhancement of MAP kinase p38α's activity and substrate selectivity by docking interactions.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 8, p. 704, doi. 10.1038/nsmb.2861

By:

Tokunaga, Yuji;
Takeuchi, Koh;
Takahashi, Hideo;
Shimada, Ichio

Publication type:

Article

Dynamics of yeast histone H2A and H2B phosphorylation in response to a double-strand break.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 103, doi. 10.1038/nsmb.2737

By:

Lee, Cheng-Sheng;
Lee, Kihoon;
Legube, Gaëlle;
Haber, James E

Publication type:

Article

Good cap/bad cap: how the cap-binding complex determines RNA fate.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 9, doi. 10.1038/nsmb.2751

By:

Müller-McNicoll, Michaela;
Neugebauer, Karla M

Publication type:

Article

Structural basis for RNA recognition by a dimeric PPR-protein complex.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1377, doi. 10.1038/nsmb.2710

By:

Ke, Jiyuan;
Chen, Run-Ze;
Ban, Ting;
Zhou, X Edward;
Gu, Xin;
Tan, M H Eileen;
Chen, Chen;
Kang, Yanyong;
Brunzelle, Joseph S;
Zhu, Jian-Kang;
Melcher, Karsten;
Xu, H Eric

Publication type:

Article

Cks confers specificity to phosphorylation-dependent CDK signaling pathways.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1407, doi. 10.1038/nsmb.2707

By:

McGrath, Denise A;
Balog, Eva Rose M;
Kõivomägi, Mardo;
Lucena, Rafael;
Mai, Michelle V;
Hirschi, Alexander;
Kellogg, Douglas R;
Loog, Mart;
Rubin, Seth M

Publication type:

Article

Conformational dynamics of STIM1 activation.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 8, p. 918, doi. 10.1038/nsmb.2647

By:

Feske, Stefan;
Prakriya, Murali

Publication type:

Article

Binding thermodynamics of a glutamate transporter homolog.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 5, p. 634, doi. 10.1038/nsmb.2548

By:

Reyes, Nicolas;
Oh, SeCheol;
Boudker, Olga

Publication type:

Article

BID-induced structural changes in BAK promote apoptosis.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 5, p. 589, doi. 10.1038/nsmb.2563

By:

Moldoveanu, Tudor;
Grace, Christy R;
Llambi, Fabien;
Nourse, Amanda;
Fitzgerald, Patrick;
Gehring, Kalle;
Kriwacki, Richard W;
Green, Douglas R

Publication type:

Article

Pinpointing a puzzling polymerase.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 9, p. 865, doi. 10.1038/nsmb.2374

By:

Mosher, Rebecca A

Publication type:

Article

Dynamic and static components power unfolding in topologically closed rings of a AAA+ proteolytic machine.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 6, p. 616, doi. 10.1038/nsmb.2288

By:

Glynn, Steven E;
Nager, Andrew R;
Baker, Tania A;
Sauer, Robert T

Publication type:

Article

Real-time assembly landscape of bacterial 30S translation initiation complex.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 6, p. 609, doi. 10.1038/nsmb.2285

By:

Milón, Pohl;
Maracci, Cristina;
Filonava, Liudmila;
Gualerzi, Claudio O;
Rodnina, Marina V

Publication type:

Article

PABP and the poly(A) tail augment microRNA repression by facilitated miRISC binding.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 6, p. 603, doi. 10.1038/nsmb.2309

By:

Moretti, Francesca;
Kaiser, Constanze;
Zdanowicz-Specht, Agnieszka;
Hentze, Matthias W

Publication type:

Article

Structure of mammalian poly(ADP-ribose) glycohydrolase reveals a flexible tyrosine clasp as a substrate-binding element.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 6, p. 653, doi. 10.1038/nsmb.2305

By:

Kim, In-Kwon;
Kiefer, James R;
Ho, Chris M W;
Stegeman, Roderick A;
Classen, Scott;
Tainer, John A;
Ellenberger, Tom

Publication type:

Article

Diverse HIV viruses are targeted by a conformationally dynamic antiviral.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 4, p. 411, doi. 10.1038/nsmb.2253

By:

Caines, Matthew E C;
Bichel, Katsiaryna;
Price, Amanda J;
McEwan, William A;
Towers, Greg J;
Willett, Brian J;
Freund, Stefan M V;
James, Leo C

Publication type:

Article

Mechanism of ubiquitylation by dimeric RING ligase RNF4.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 9, p. 1052, doi. 10.1038/nsmb.2108

By:

Plechanovová, Anna;
Jaffray, Ellis G.;
McMahon, Stephen A.;
Johnson, Kenneth A.;
Navrátilová, Iva;
Naismith, James H.;
Hay, Ronald T.

Publication type:

Article

Modular mechanism of Wnt signaling inhibition by Wnt inhibitory factor 1.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 8, p. 886, doi. 10.1038/nsmb.2081

By:

Malinauskas, Tomas;
Aricescu, A. Radu;
Weixian Lu;
Siebold, Christian;
Jones, E. Yvonne

Publication type:

Article

Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 6, p. 715, doi. 10.1038/nsmb.2057

By:

Becker, Thomas;
Armache, Jean-Paul;
Jarasch, Alexander;
Anger, Andreas M.;
Villa, Elizabeth;
Sieber, Heidemarie;
Motaal, Basma Abdel;
Mielke, Thorsten;
Berninghausen, Otto;
Beckmann, Roland

Publication type:

Article

Implications of molecular heterogeneity for the cooperativity of biological macromolecules.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 6, p. 732, doi. 10.1038/nsmb.2052

By:

Solomatin, Sergey V.;
Greenfeld, Max;
Herschlag, Daniel

Publication type:

Article

Common architecture of nuclear receptor heterodimers on DNA direct repeat elements with different spacings.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 5, p. 564, doi. 10.1038/nsmb.2054

By:

Rochel, Natacha;
Ciesielski, Fabrice;
Godet, Julien;
Moman, Edelmiro;
Roessle, Manfred;
Peluso-Iltis, Carole;
Moulin, Martine;
Haertlein, Michael;
Callow, Phil;
Mély, Yves;
Svergun, Dmitri I.;
Moras, Dino

Publication type:

Article