Works matching DE "ENCODE Project"

Results: 36

Genomics: Mice in the ENCODE spotlight.

Published in:

Nature, 2014, v. 515, n. 7527, p. 346, doi. 10.1038/515346a

By:

Carninci, Piero

Publication type:

Article

Comparative analysis of the transcriptome across distant species.

Published in:

Nature, 2014, v. 512, n. 7515, p. 445, doi. 10.1038/nature13424

By:

Gerstein, Mark B.;
Rozowsky, Joel;
Yan, Koon-Kiu;
Wang, Daifeng;
Cheng, Chao;
Brown, James B.;
Davis, Carrie A.;
Hillier, LaDeana;
Sisu, Cristina;
Li, Jingyi Jessica;
Pei, Baikang;
Harmanci, Arif O.;
Duff, Michael O.;
Djebali, Sarah;
Alexander, Roger P.;
Alver, Burak H.;
Auerbach, Raymond;
Bell, Kimberly;
Bickel, Peter J.;
Boeck, Max E.

Publication type:

Article

ENCODE debate revived online.

Published in:: Nature, 2014, v. 509, n. 7499, p. 137, doi. 10.1038/509137e
Publication type:: Article

Epigenetic Regulation of BDNF Gene during Development and Diseases.

Published in:

International Journal of Molecular Sciences, 2017, v. 18, n. 3, p. 571, doi. 10.3390/ijms18030571

By:

Kuan-Wei Chen;
Linyi Chen

Publication type:

Article

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum.

Published in:

Nature, 2015, v. 527, n. 7579, p. 508, doi. 10.1038/nature15714

By:

VanBuren, Robert;
Bryant, Doug;
Edger, Patrick P.;
Tang, Haibao;
Burgess, Diane;
Challabathula, Dinakar;
Spittle, Kristi;
Hall, Richard;
Gu, Jenny;
Lyons, Eric;
Freeling, Michael;
Bartels, Dorothea;
Ten Hallers, Boudewijn;
Hastie, Alex;
Michael, Todd P.;
Mockler, Todd C.

Publication type:

Article

Modeling, simulation and analysis of methylation profiles from reduced representation bisulfite sequencing experiments.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2013, v. 12, n. 6, p. 723, doi. 10.1515/sagmb-2013-0027

By:

Lacey, Michelle R.;
Baribault, Carl;
Ehrlich, Melanie

Publication type:

Article

MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2914, doi. 10.1093/bioinformatics/btx334

By:

Bernstein, Matthew N.;
AnHai Doan;
Dewey, Colin N.

Publication type:

Article

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 956, doi. 10.1093/bioinformatics/btw740

By:

Quach, Bryan;
Furey, Terrence S.

Publication type:

Article

C-It-Loci: a knowledge database for tissue-enriched loci.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3537, doi. 10.1093/bioinformatics/btv410

By:

Weirick, Tyler;
John, David;
Dimmeler, Stefanie;
Uchida, Shizuka

Publication type:

Article

CWig: compressed representation of Wiggle/BedGraph format.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2543, doi. 10.1093/bioinformatics/btu330

By:

Huy Hoang, Do;
Sung, Wing-Kin

Publication type:

Article

The genome as a developmental organ.

Published in:

Journal of Physiology, 2014, v. 592, n. 11, p. 2283, doi. 10.1113/jphysiol.2014.271734

By:

Lamm, Ehud

Publication type:

Article

SCIENCE.

Published in:

National Catholic Bioethics Quarterly, 2012, v. 12, n. 3, p. 505

By:

AUSTRIACO, NICANOR PIER GIORGIO

Publication type:

Article

From Junk to Treasure: September 2012.

Published in:

Oral & Craniofacial Tissue Engineering, 2012, v. 2, n. 4, p. 335

By:

Glick, Paul L.

Publication type:

Article

Massive Study Compilation Illuminates Regulatory Role of Non-Gene-Encoding DNA.

Published in:

2012

By:

Kuehn, Bridget M.

Publication type:

Opinion

Genome-wide prediction of cis-regulatory regions using supervised deep learning methods.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2187-1

By:

Li, Yifeng;
Shi, Wenqiang;
Wasserman, Wyeth W.

Publication type:

Article

Recurrent somatic mutations in regulatory regions of human cancer genomes.

Published in:

Nature Genetics, 2015, v. 47, n. 7, p. 710, doi. 10.1038/ng.3332

By:

Melton, Collin;
Reuter, Jason A;
Spacek, Damek V;
Snyder, Michael

Publication type:

Article

A blooming genomic desert.

Published in:

Nature Methods, 2014, v. 11, n. 2, p. 135, doi. 10.1038/nmeth.2817

By:

Marx, Vivien

Publication type:

Article

Building an ENCODE-style data compendium on a shoestring.

Published in:

Nature Methods, 2013, v. 10, n. 10, p. 926, doi. 10.1038/nmeth.2643

By:

Ruau, David;
Ng, Felicia S L;
Wilson, Nicola K;
Hannah, Rebecca;
Diamanti, Evangelia;
Lombard, Patrick;
Woodhouse, Steven;
Göttgens, Berthold

Publication type:

Article

The way you say it.

Published in:: Nature Methods, 2013, v. 10, n. 10, p. 917, doi. 10.1038/nmeth.2686
Publication type:: Article

Genomics: The ENCODE project.

Published in:

Nature Methods, 2012, v. 9, n. 11, p. 1046, doi. 10.1038/nmeth.2238

By:

de Souza, Natalie

Publication type:

Article

GENOME AS A MULTIPURPOSE STRUCTURE BUILT BY EVOLUTION.

Published in:

2014

By:

MORANGE, MICHEL

Publication type:

Essay

Michael Snyder.

Published in:: 2012
Publication type:: Interview

A decade of human genome project conclusion: Scientific diffusion about our genome knowledge.

Published in:

Biochemistry & Molecular Biology Education, 2016, v. 44, n. 3, p. 215, doi. 10.1002/bmb.20952

By:

Moraes, Fernanda;
Góes, Andréa

Publication type:

Article

Cross-species Conservation of context-specific networks.

Published in:

BMC Systems Biology, 2016, v. 10, p. 1, doi. 10.1186/s12918-016-0304-1

By:

Pesch, Robert;
Zimmer, Ralf

Publication type:

Article

Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 37, doi. 10.1186/s12859-017-1801-y

By:

Yongsheng Bai;
Jeff Kinne;
Lizhong Ding;
Rath, Ethan C.;
Cox, Aaron;
Naidu, Siva Dharman

Publication type:

Article

On the Immortality of Television Sets: “Function” in the Human Genome According to the Evolution-Free Gospel of ENCODE.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 3, p. 578, doi. 10.1093/gbe/evt028

By:

Graur, Dan;
Zheng, Yichen;
Price, Nicholas;
Azevedo, Ricardo B.R.;
Zufall, Rebecca A.;
Elhaik, Eran

Publication type:

Article

The implications of ENCODE for diagnostics.

Published in:

Nature Biotechnology, 2012, v. 30, n. 11, p. 1064, doi. 10.1038/nbt.2418

By:

Fratkin, Eugene;
Bercovici, Sivan;
Stephan, Dietrich A

Publication type:

Article

Uniting ENCODE with genome-wide proteomics.

Published in:

Nature Biotechnology, 2012, v. 30, n. 11, p. 1065, doi. 10.1038/nbt.2416

By:

Paik, Young-Ki;
Hancock, William S

Publication type:

Article

Encyclopedia of DNA.

Published in:

Environmental Health Perspectives, 2004, v. 112, n. 12, p. A670

By:

Dahl, Richard

Publication type:

Article

The ENCODE project: implications for psychiatric genetics.

Published in:

Molecular Psychiatry, 2013, v. 18, n. 5, p. 540, doi. 10.1038/mp.2013.13

By:

Kavanagh, D H;
Dwyer, S;
O'Donovan, M C;
Owen, M J

Publication type:

Article

Junk or functional DNA? ENCODE and the function controversy.

Published in:

Biology & Philosophy, 2014, v. 29, n. 6, p. 807, doi. 10.1007/s10539-014-9441-3

By:

Germain, Pierre-Luc;
Ratti, Emanuele;
Boem, Federico

Publication type:

Article

Integrating regulatory features data for prediction of functional disease-associated SNPs.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 26, doi. 10.1093/bib/bbx094

By:

Dong, Shan-Shan;
Guo, Yan;
Yao, Shi;
Chen, Yi-Xiao;
He, Mo-Nan;
Zhang, Yu-Jie;
Chen, Xiao-Feng;
Chen, Jia-Bin;
Yang, Tie-Lin

Publication type:

Article

Decoding ENCODE.

Published in:: Nature Chemical Biology, 2012, v. 8, n. 11, p. 871, doi. 10.1038/nchembio.1107
Publication type:: Article

Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-141

By:

Khatun, Jainab;
Yanbao Yu;
Wrobel, John A.;
Risk, Brian A.;
Gunawardena, Harsha P.;
Secrest, Ashley;
Spitzer, Wendy J.;
Ling Xie;
Xian Chen;
Giddings, Morgan C.

Publication type:

Article

A Comprehensive Review of Emerging Computational Methods for Gene Identification.

Published in:

Journal of Information Processing Systems, 2016, v. 12, n. 1, p. 1, doi. 10.3745/JIPS.04.0023

By:

Ning Yu;
Zeng Yu;
Bing Li;
Feng Gu;
Yi Pan

Publication type:

Article

Evaluation of potential regulatory function of breast cancer risk locus at 6q25.1.

Published in:

Carcinogenesis, 2016, v. 37, n. 2, p. 163, doi. 10.1093/carcin/bgv170

By:

Sun, Yaqiong;
Chuanzhong Ye;
Xingyi Guo;
Wanqing Wen;
Jirong Long;
Yu-Tang Gao;
Xiao Ou Shu;
Wei Zheng;
Qiuyin Cai

Publication type:

Article