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Whole-Genome Profiling of Mutagenesis in Caenorhabditis elegans.
Published in:
Genetics, 2010, v. 185, n. 2, p. 431, doi. 10.1534/genetics.110.116616
By:
- Flibotte, Stephane;
- Edgley, Mark L.;
- Chaudhry, Iasha;
- Taylor, Jon;
- Neil, Sarah E.;
- Rogula, Aleksandra;
- Zapf, Rick;
- Hirst, Martin;
- Butterfield, Yaron;
- Jones, Steven J.;
- Marra, Marco A.;
- Barstead, Robert J.;
- Moerman, Donald G.
Publication type:
Article
Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer.
Published in:
Journal of Pathology, 2012, v. 227, n. 1, p. 53, doi. 10.1002/path.3987
By:
- Wu, Chunxiao;
- Wyatt, Alexander W;
- Lapuk, Anna V;
- McPherson, Andrew;
- McConeghy, Brian J;
- Bell, Robert H;
- Anderson, Shawn;
- Haegert, Anne;
- Brahmbhatt, Sonal;
- Shukin, Robert;
- Mo, Fan;
- Li, Estelle;
- Fazli, Ladan;
- Hurtado-Coll, Antonio;
- Jones, Edward C;
- Butterfield, Yaron S;
- Hach, Faraz;
- Hormozdiari, Fereydoun;
- Hajirasouliha, Iman;
- Boutros, Paul C
Publication type:
Article
Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.
Published in:
Journal of Pathology, 2012, v. 226, n. 1, p. 7, doi. 10.1002/path.2995
By:
- Yip, Stephen;
- Butterfield, Yaron S;
- Morozova, Olena;
- Chittaranjan, Suganthi;
- Blough, Michael D;
- An, Jianghong;
- Birol, Inanc;
- Chesnelong, Charles;
- Chiu, Readman;
- Chuah, Eric;
- Corbett, Richard;
- Docking, Rod;
- Firme, Marlo;
- Hirst, Martin;
- Jackman, Shaun;
- Karsan, Aly;
- Li, Haiyan;
- Louis, David N;
- Maslova, Alexandra;
- Moore, Richard
Publication type:
Article
Recurrent activating ACVR1 mutations in diffuse intrinsic pontine glioma.
Published in:
Nature Genetics, 2014, v. 46, n. 5, p. 457, doi. 10.1038/ng.2925
By:
- Taylor, Kathryn R;
- Mackay, Alan;
- Truffaux, Nathalène;
- Butterfield, Yaron S;
- Morozova, Olena;
- Philippe, Cathy;
- Castel, David;
- Grasso, Catherine S;
- Vinci, Maria;
- Carvalho, Diana;
- Carcaboso, Angel M;
- de Torres, Carmen;
- Cruz, Ofelia;
- Mora, Jaume;
- Entz-Werle, Natacha;
- Ingram, Wendy J;
- Monje, Michelle;
- Hargrave, Darren;
- Bullock, Alex N;
- Puget, Stéphanie
Publication type:
Article
The Cancer Genome Atlas Pan-Cancer analysis project.
Published in:
Nature Genetics, 2013, v. 45, n. 10, p. 1113, doi. 10.1038/ng.2764
By:
- Chang, Kyle;
- Creighton, Chad J;
- Davis, Caleb;
- Donehower, Lawrence;
- Drummond, Jennifer;
- Wheeler, David;
- Ally, Adrian;
- Balasundaram, Miruna;
- Birol, Inanc;
- Butterfield, Yaron S N;
- Chu, Andy;
- Chuah, Eric;
- Chun, Hye-Jung E;
- Dhalla, Noreen;
- Guin, Ranabir;
- Hirst, Martin;
- Hirst, Carrie;
- Holt, Robert A;
- Jones, Steven J M;
- Lee, Darlene
Publication type:
Article
De novo assembly and analysis of RNA-seq data.
Published in:
Nature Methods, 2010, v. 7, n. 11, p. 909, doi. 10.1038/nmeth.1517
By:
- Robertson, Gordon;
- Schein, Jacqueline;
- Chiu, Readman;
- Corbett, Richard;
- Field, Matthew;
- Jackman, Shaun D.;
- Mungall, Karen;
- Sam Lee;
- Okada, Hisanaga Mark;
- Qian, Jenny Q.;
- Griffith, Malachi;
- Raymond, Anthony;
- Thiessen, Nina;
- Cezard, Timothee;
- Butterfield, Yaron S.;
- Newsome, Richard;
- Chan, Simon K.;
- Rong She;
- Varhol, Richard;
- Kamoh, Baljit
Publication type:
Article
JAGuaR: Junction Alignments to Genome for RNA-Seq Reads.
Published in:
PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102398
By:
- Butterfield, Yaron S.;
- Kreitzman, Maayan;
- Thiessen, Nina;
- Corbett, Richard D.;
- Li, Yisu;
- Pang, Johnson;
- Ma, Yussanne P.;
- Jones, Steven J. M.;
- Birol, İnanç
Publication type:
Article
Simvastatin increases temozolomide‐induced cell death by targeting the fusion of autophagosomes and lysosomes.
Published in:
FEBS Journal, 2020, v. 287, n. 5, p. 1005, doi. 10.1111/febs.15069
By:
- Shojaei, Shahla;
- Koleini, Navid;
- Samiei, Ehsan;
- Aghaei, Mahmoud;
- Cole, Laura K.;
- Alizadeh, Javad;
- Islam, Md Imamul;
- Vosoughi, Amir‐reza;
- Albokashy, Mohammed;
- Butterfield, Yaron;
- Marzban, Hassan;
- Xu, Fred;
- Thliveris, James;
- Kardami, Elissavet;
- Hatch, Grant M.;
- Eftekharpour, Eftekhar;
- Akbari, Mohsen;
- Hombach‐Klonisch, Sabine;
- Klonisch, Thomas;
- Ghavami, Saeid
Publication type:
Article
Systematic sequencing of cDNA clones using the transposon Tn5.
Published in:
Nucleic Acids Research, 2002, v. 30, n. 11, p. 2469, doi. 10.1093/nar/30.11.2469
By:
- Shevchenko, Yuriy;
- Bouffard, Gerard G.;
- Butterfield, Yaron S. N.;
- Blakesley, Robert W.;
- Hartley, James L.;
- Young, Alice C.;
- Marra, Marco A.;
- Jones, Steven J. M.;
- Touchman, Jeffrey W.;
- Green, Eric D.
Publication type:
Article
An efficient strategy for large-scale high-throughput transposon-mediated sequencing of cDNA clones.
Published in:
Nucleic Acids Research, 2002, v. 30, n. 11, p. 2460, doi. 10.1093/nar/30.11.2460
By:
- Butterfield, Yaron S. N.;
- Marra, Marco A.;
- Asano, Jennifer K.;
- Chan, Susanna Y.;
- Guin, Ranabir;
- Krzywinski, Martin I.;
- Lee, Soo Sen;
- MacDonald, Kim W. K.;
- Mathewson, Carrie A.;
- Olson, Teika E.;
- Pandoh, Pawan K.;
- Prabhu, Anna-Liisa;
- Schnerch, Angelique;
- Skalska, Ursula;
- Smailus, Duane E.;
- Stott, Jeff M.;
- Tsai, Miranda I.;
- Yang, George S.;
- Zuyderduyn, Scott D.;
- Schein, Jacqueline E.
Publication type:
Article
Genomics of hybrid poplar ( Populus trichocarpa× deltoides) interacting with forest tent caterpillars ( Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences in poplar
Published in:
Molecular Ecology, 2006, v. 15, n. 5, p. 1275, doi. 10.1111/j.1365-294X.2006.02824.x
By:
- Ralph, Steven;
- Oddy, Claire;
- Cooper, Dawn;
- Yueh, Hesther;
- Jancsik, Sharon;
- Kolosova, Natalia;
- Philippe, Ryan N.;
- Aeschliman, Dana;
- White, Rick;
- Huber, Dezene;
- Ritland, Carol E.;
- Benoit, Fran&#00Xc7;ois;
- Rigby, Tracey;
- Nantel, André;
- Butterfield, Yaron S. N.;
- Kirkpatrick, Robert;
- Chun, Elizabeth;
- Liu, Jerry;
- Palmquist, Diana;
- Wynhoven, Brian
Publication type:
Article
Conifer defence against insects: microarray gene expression profiling of Sitka spruce ( Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms ( Choristoneura occidentalis) or white pine weevils ( Pissodes strobi ) reveals large-scale changes of the host transcriptome
Published in:
Plant, Cell & Environment, 2006, v. 29, n. 8, p. 1545, doi. 10.1111/j.1365-3040.2006.01532.x
By:
- Ralph, Steven G.;
- Yueh, Hesther;
- Friedmann, Michael;
- Aeschliman, Dana;
- Zeznik, Jeffrey A.;
- Nelson, Colleen C.;
- Butterfield, Yaron S. N.;
- Kirkpatrick, Robert;
- Liu, Jerry;
- Jones, Steven J. M.;
- Marra, Marco A.;
- Douglas, Carl J.;
- Ritland, Kermit;
- Bohlmann, Jörg
Publication type:
Article
Comprehensive molecular portraits of human breast tumours.
Published in:
Nature, 2012, v. 490, n. 7418, p. 61, doi. 10.1038/nature11412
By:
- Koboldt, Daniel C.;
- Fulton, Robert S.;
- McLellan, Michael D.;
- Schmidt, Heather;
- Kalicki-Veizer, Joelle;
- McMichael, Joshua F.;
- Fulton, Lucinda L.;
- Dooling, David J.;
- Ding, Li;
- Mardis, Elaine R.;
- Wilson, Richard K.;
- Ally, Adrian;
- Balasundaram, Miruna;
- Butterfield, Yaron S. N.;
- Carlsen, Rebecca;
- Carter, Candace;
- Chu, Andy;
- Chuah, Eric;
- Chun, Hye-Jung E.;
- Coope, Robin J. N.
Publication type:
Article
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-550
By:
- Swanson, Lucas;
- Robertson, Gordon;
- Mungall, Karen L.;
- Butterfield, Yaron S.;
- Chiu, Readman;
- Corbett, Richard D.;
- Roderick Docking, T.;
- Hogge, Donna;
- Jackman, Shaun D.;
- Moore, Richard A.;
- Mungall, Andrew J.;
- Nip, Ka Ming;
- Parker, Jeremy D. K.;
- Qian, Jenny Qing;
- Raymond, Anthony;
- Sung, Sandy;
- Tam, Angela;
- Thiessen, Nina;
- Varhol, Richard;
- Wang, Sherry
Publication type:
Article
Genomic sequence of a mutant strain ofCaenorhabditis elegans with an alteredrecombination pattern.
Published in:
BMC Genomics, 2010, v. 11, p. 131, doi. 10.1186/1471-2164-11-131
By:
- Rose, Ann M.;
- O'Neil, Nigel J.;
- Bilenky, Mikhail;
- Butterfield, Yaron S.;
- Malhis, Nawar;
- Flibotte, Stephane;
- Jones, Martin R.;
- Marra, Marco;
- Baillie, David L.;
- Jones, Steven J. M.
Publication type:
Article
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.
Published in:
Bioinformatics, 2014, v. 30, n. 23, p. 3402, doi. 10.1093/bioinformatics/btu558
By:
- Chu, Justin;
- Sadeghi, Sara;
- Raymond, Anthony;
- Jackman, Shaun D.;
- Nip, Ka Ming;
- Mar, Richard;
- Mohamadi, Hamid;
- Butterfield, Yaron S.;
- Robertson, A. Gordon;
- Birol, Inanç
Publication type:
Article
Slider—maximum use of probability information for alignment of short sequence reads and SNP detection.
Published in:
Bioinformatics, 2009, v. 25, n. 1, p. 6, doi. 10.1093/bioinformatics/btn565
By:
- Malhis, Nawar;
- Butterfield, Yaron S. N.;
- Ester, Martin;
- Jones, Steven J. M.
Publication type:
Article
Generation of a wheat leaf rust, Puccinia triticina, EST database from stage-specific cDNA libraries.
Published in:
Molecular Plant Pathology, 2007, v. 8, n. 4, p. 451, doi. 10.1111/j.1364-3703.2007.00406.x
By:
- GUANGGAN HU;
- LINNING, ROB;
- MCCALLUM, BRENT;
- BANKS, TRAVIS;
- CLOUTIER, SYLVIE;
- BUTTERFIELD, YARON;
- LIU, JERRY;
- KIRKPATRICK, ROBERT;
- STOTT, JEFF;
- YANG, GEORGE;
- SMAILUS, DUANE;
- JONES, STEVEN;
- MARRA, MARCO;
- SCHEIN, JACQUELINE;
- BAKKEREN, GUUS
Publication type:
Article

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