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Identification of miRNA-eQTLs in maize mature leaf by GWAS.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07073-0
By:
- Chen, Shu-Yun;
- Su, Mei-Hsiu;
- Kremling, Karl A.;
- Lepak, Nicholas K.;
- Romay, M. Cinta;
- Sun, Qi;
- Bradbury, Peter J.;
- Buckler, Edward S.;
- Ku, Hsin-Mei
Publication type:
Article
The Genetic Architecture Of Maize Height.
Published in:
Genetics, 2014, v. 196, n. 4, p. 1337, doi. 10.1534/genetics.113.159152
By:
- Peiffer, Jason A.;
- Romay, Maria C.;
- Gore, Michael A.;
- Flint-Garcia, Sherry A.;
- Zhiwu Zhang;
- Millard, Mark J.;
- Gardner, Candice A. C.;
- McMullen, Michael D.;
- Holland, James B.;
- Bradbury, Peter J.;
- Buckler, Edward S.
Publication type:
Article
Maize HapMap2 identifies extant variation from a genome in flux.
Published in:
Nature Genetics, 2012, v. 44, n. 7, p. 803, doi. 10.1038/ng.2313
By:
- Chia, Jer-Ming;
- Song, Chi;
- Bradbury, Peter J;
- Costich, Denise;
- de Leon, Natalia;
- Doebley, John;
- Elshire, Robert J;
- Gaut, Brandon;
- Geller, Laura;
- Glaubitz, Jeffrey C;
- Gore, Michael;
- Guill, Kate E;
- Holland, Jim;
- Hufford, Matthew B;
- Lai, Jinsheng;
- Li, Meng;
- Liu, Xin;
- Lu, Yanli;
- McCombie, Richard;
- Nelson, Rebecca
Publication type:
Article
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population.
Published in:
Nature Genetics, 2011, v. 43, n. 2, p. 163, doi. 10.1038/ng.747
By:
- Kump, Kristen L.;
- Bradbury, Peter J.;
- Wisser, Randall J.;
- Buckler, Edward S.;
- Belcher, Araby R.;
- Oropeza-Rosas, Marco A.;
- Zwonitzer, John C.;
- Kresovich, Stephen;
- McMullen, Michael D.;
- Ware, Doreen;
- Balint-Kurti, Peter J.;
- Holland, James B.
Publication type:
Article
Genome-wide association study of leaf architecture in the maize nested association mapping population.
Published in:
Nature Genetics, 2011, v. 43, n. 2, p. 159, doi. 10.1038/ng.746
By:
- Feng Tian;
- Bradbury, Peter J.;
- Brown, Patrick J.;
- Hsiaoyi Hung;
- Qi Sun;
- Flint-Garcia, Sherry;
- Rocheford, Torbert R.;
- McMullen, Michael D.;
- Holland, James B.;
- Buckler, Edward S.
Publication type:
Article
Mixed linear model approach adapted for genome-wide association studies.
Published in:
Nature Genetics, 2010, v. 42, n. 4, p. 355, doi. 10.1038/ng.546
By:
- Zhiwu Zhang;
- Ersoz, Elhan;
- Chao-Qiang Lai;
- Todhunter, Rory J.;
- Tiwari, Hemant K.;
- Gore, Michael A.;
- Bradbury, Peter J.;
- Yu, Jianming;
- Arnett, Donna K.;
- Ordovas, Jose M.;
- Buckler, Edward S.
Publication type:
Article
Software engineering the mixed model for genome-wide association studies on large samples.
Published in:
Briefings in Bioinformatics, 2009, v. 10, n. 6, p. 664, doi. 10.1093/bib/bbp050
By:
- Zhang, Zhiwu;
- Buckler, Edward S.;
- Casstevens, Terry M.;
- Bradbury, Peter J.
Publication type:
Article
Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population.
Published in:
Plant Journal, 2016, v. 86, n. 5, p. 391, doi. 10.1111/tpj.13174
By:
- Li, Yong‐xiang;
- Li, Chunhui;
- Bradbury, Peter J.;
- Liu, Xiaolei;
- Lu, Fei;
- Romay, Cinta M.;
- Glaubitz, Jeffrey C.;
- Wu, Xun;
- Peng, Bo;
- Shi, Yunsu;
- Song, Yanchun;
- Zhang, Dengfeng;
- Buckler, Edward S.;
- Zhang, Zhiwu;
- Li, Yu;
- Wang, Tianyu
Publication type:
Article
A multi‐trait multi‐locus stepwise approach for conducting GWAS on correlated traits.
Published in:
Plant Genome, 2022, v. 15, n. 2, p. 1, doi. 10.1002/tpg2.20200
By:
- Fernandes, Samuel B.;
- Casstevens, Terry M.;
- Bradbury, Peter J.;
- Lipka, Alexander E.
Publication type:
Article
A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction.
Published in:
Plant Genome, 2020, v. 13, n. 1, p. 1, doi. 10.1002/tpg2.20009
By:
- Jensen, Sarah E.;
- Charles, Jean Rigaud;
- Muleta, Kebede;
- Bradbury, Peter J.;
- Casstevens, Terry;
- Deshpande, Santosh P.;
- Gore, Michael A.;
- Gupta, Rajeev;
- Ilut, Daniel C.;
- Johnson, Lynn;
- Lozano, Roberto;
- Miller, Zachary;
- Ramu, Punna;
- Rathore, Abhishek;
- Romay, M. Cinta;
- Upadhyaya, Hari D.;
- Varshney, Rajeev K.;
- Morris, Geoffrey P.;
- Pressoir, Gael;
- Buckler, Edward S.
Publication type:
Article
The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication.
Published in:
PLoS Genetics, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pgen.1008791
By:
- Chen, Qiuyue;
- Samayoa, Luis Fernando;
- Yang, Chin Jian;
- Bradbury, Peter J.;
- Olukolu, Bode A.;
- Neumeyer, Michael A.;
- Romay, Maria Cinta;
- Sun, Qi;
- Lorant, Anne;
- Buckler, Edward S.;
- Ross-Ibarra, Jeffrey;
- Holland, James B.;
- Doebley, John F.
Publication type:
Article
Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays.
Published in:
BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-251
By:
- Bernardo, Amy N.;
- Bradbury, Peter J.;
- Hongxiang Ma;
- Shengwa Hu;
- Bowden, Robert L.;
- Buckler, Edward S.;
- Guihua Bai
Publication type:
Article
Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain.
Published in:
Plant Cell, 2021, v. 33, n. 4, p. 882, doi. 10.1093/plcell/koab032
By:
- Diepenbrock, Christine H;
- Ilut, Daniel C;
- Magallanes-Lundback, Maria;
- Kandianis, Catherine B;
- Lipka, Alexander E;
- Bradbury, Peter J;
- Holland, James B;
- Hamilton, John P;
- Wooldridge, Edmund;
- Vaillancourt, Brieanne;
- Góngora-Castillo, Elsa;
- Wallace, Jason G;
- Cepela, Jason;
- Mateos-Hernandez, Maria;
- Owens, Brenda F;
- Tiede, Tyler;
- Buckler, Edward S;
- Rocheford, Torbert;
- Buell, C Robin;
- Gore, Michael A
Publication type:
Article
Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain.
Published in:
Plant Cell, 2017, v. 29, n. 10, p. 2374, doi. 10.1105/tpc.17.00475
By:
- Diepenbrock, Christine H.;
- Kandianis, Catherine B.;
- Lipka, Alexander E.;
- Magallanes-Lundback, Maria;
- Vaillancourt, Brieanne;
- Góngora-Castillo, Elsa;
- Wallace, Jason G.;
- Cepela, Jason;
- Mesberg, Alex;
- Bradbury, Peter J.;
- Ilut, Daniel C.;
- Mateos-Hernandez, Maria;
- Hamilton, John;
- Owens, Brenda F.;
- Tiede, Tyler;
- Buckler, Edward S.;
- Rocheford, Torbert;
- Buell, C. Robin;
- Gore, Michael A.;
- DellaPenna, Dean
Publication type:
Article
Maize YABBY Genes drooping leaf1 and drooping leaf2 Regulate Plant Architecture.
Published in:
Plant Cell, 2017, v. 29, n. 7, p. 1622, doi. 10.1105/tpc.16.00477
By:
- Strable, Josh;
- Wallace, Jason G.;
- Unger-Wallace, Erica;
- Briggs, Sarah;
- Bradbury, Peter J.;
- Buckler, Edward S.;
- Vollbrecht, Erik
Publication type:
Article
Development of the Wheat Practical Haplotype Graph database as a resource for genotyping data storage and genotype imputation.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 2, p. 1, doi. 10.1093/g3journal/jkab390
By:
- Jordan, Katherine W.;
- Bradbury, Peter J.;
- Miller, Zachary R.;
- Nyine, Moses;
- Fei He;
- Fraser, Max;
- Anderson, Jim;
- Mason, Esten;
- Katz, Andrew;
- Pearce, Stephen;
- Carter, Arron H.;
- Prather, Samuel;
- Pumphrey, Michael;
- Jianli Chen;
- Cook, Jason;
- Shuyu Liu;
- Rudd, Jackie C.;
- Zhen Wang;
- Chenggen Chu;
- Ibrahim, Amir M. H.
Publication type:
Article
Genome-wide imputation using the practical haplotype graph in the heterozygous crop cassava.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab383
By:
- Long, Evan M.;
- Bradbury, Peter J.;
- Romay, M. Cinta;
- Buckler, Edward S.;
- Robbins, Kelly R.
Publication type:
Article
Maize Introgression Library Provides Evidence for the Involvement of liguleless1 in Resistance to Northern Leaf Blight.
Published in:
G3: Genes | Genomes | Genetics, 2020, v. 10, n. 10, p. 3611, doi. 10.1534/g3.120.401500
By:
- Kolkman, Judith M.;
- Strable, Josh;
- Harline, Kate;
- Kroon, Dallas E.;
- Wiesner-Hanks, Tyr;
- Bradbury, Peter J.;
- Nelson, Rebecca J.
Publication type:
Article
High-resolution genetic mapping of maize pan-genome sequence anchors.
Published in:
Nature Communications, 2015, v. 6, n. 4, p. 6914, doi. 10.1038/ncomms7914
By:
- Lu, Fei;
- Romay, Maria C.;
- Glaubitz, Jeffrey C.;
- Bradbury, Peter J.;
- Elshire, Robert J.;
- Wang, Tianyu;
- Li, Yu;
- Li, Yongxiang;
- Semagn, Kassa;
- Zhang, Xuecai;
- Hernandez, Alvaro G.;
- Mikel, Mark A.;
- Soifer, Ilya;
- Barad, Omer;
- Buckler, Edward S.
Publication type:
Article
Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize.
Published in:
BMC Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12915-015-0187-4
By:
- Chunhui Li;
- Yongxiang Li;
- Bradbury, Peter J.;
- Xun Wu;
- Yunsu Shi;
- Yanchun Song;
- Dengfeng Zhang;
- Rodgers-Melnick, Eli;
- Buckler, Edward S.;
- Zhiwu Zhang;
- Yu Li;
- Tianyu Wang
Publication type:
Article
TASSEL: software for association mapping of complex traits in diverse samples.
Published in:
Bioinformatics, 2007, v. 23, n. 19, p. 2633, doi. 10.1093/bioinformatics/btm308
By:
- Peter J. Bradbury;
- Zhiwu Zhang;
- Dallas E. Kroon;
- Terry M. Casstevens;
- Yogesh Ramdoss;
- Edward S. Buckler
Publication type:
Article
Dominance Effects and Functional Enrichments Improve Prediction of Agronomic Traits in Hybrid Maize.
Published in:
Genetics, 2020, v. 215, n. 1, p. 215, doi. 10.1534/genetics.120.303025
By:
- Ramstein, Guillaume P.;
- Larsson, Sara J.;
- Cook, Jason P.;
- Edwards, Jode W.;
- Ersoz, Elhan S.;
- Flint-Garcia, Sherry;
- Gardner, Candice A.;
- Holland, James B.;
- Lorenz, Aaron J.;
- McMullen, Michael D.;
- Millard, Mark J.;
- Rocheford, Torbert R.;
- Tuinstra, Mitchell R.;
- Bradbury, Peter J.;
- Buckler, Edward S.;
- Romay, M. Cinta
Publication type:
Article
Genetic Architecture of Domestication-Related Traits in Maize.
Published in:
Genetics, 2016, v. 204, n. 1, p. 99, doi. 10.1534/genetics.116.191106
By:
- Shang Xue;
- Bradbury, Peter J.;
- Casstevens, Terry;
- Holland, James B.
Publication type:
Article
Genome-Wide Association of Carbon and Nitrogen Metabolism in the Maize Nested Association Mapping Population.
Published in:
Plant Physiology, 2015, v. 168, n. 2, p. 573, doi. 10.1104/pp.15.00025
By:
- Nengyi Zhang;
- Gibon, Yves;
- Wallace, Jason G.;
- Lepak, Nicholas;
- Pinghua Li;
- Dedow, Lauren;
- Chen, Charles;
- Yoon-Sup So;
- Kremling, Karl;
- Bradbury, Peter J.;
- Brutnell, Thomas;
- Stitt, Mark;
- Buckler, Edward S.
Publication type:
Article
Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize.
Published in:
PLoS Genetics, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pgen.1004845
By:
- Wallace, Jason G.;
- Bradbury, Peter J.;
- Zhang, Nengyi;
- Gibon, Yves;
- Stitt, Mark;
- Buckler, Edward S.
Publication type:
Article
Distinct Genetic Architectures for Male and Female Inflorescence Traits of Maize.
Published in:
PLoS Genetics, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pgen.1002383
By:
- Brown, Patrick J.;
- Upadyayula, Narasimham;
- Mahone, Gregory S.;
- Feng Tian;
- Bradbury, Peter J.;
- Myles, Sean;
- Holland, James B.;
- Flint-Garcia, Sherry;
- McMullen, Michael D.;
- Buckler, Edward S.;
- Rocheford, Torbert R.
Publication type:
Article
Domestication reshaped the genetic basis of inbreeding depression in a maize landrace compared to its wild relative, teosinte.
Published in:
PLoS Genetics, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pgen.1009797
By:
- Samayoa, Luis Fernando;
- Olukolu, Bode A.;
- Yang, Chin Jian;
- Chen, Qiuyue;
- Stetter, Markus G.;
- York, Alessandra M.;
- Sanchez-Gonzalez, Jose de Jesus;
- Glaubitz, Jeffrey C.;
- Bradbury, Peter J.;
- Romay, Maria Cinta;
- Sun, Qi;
- Yang, Jinliang;
- Ross-Ibarra, Jeffrey;
- Buckler, Edward S.;
- Doebley, John F.;
- Holland, James B.
Publication type:
Article
GAPIT: genome association and prediction integrated tool.
Published in:
Bioinformatics, 2012, v. 28, n. 18, p. 2397, doi. 10.1093/bioinformatics/bts444
By:
- Lipka, Alexander E.;
- Tian, Feng;
- Wang, Qishan;
- Peiffer, Jason;
- Li, Meng;
- Bradbury, Peter J.;
- Gore, Michael A.;
- Buckler, Edward S.;
- Zhang, Zhiwu
Publication type:
Article

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