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Towards genome-scale signalling network reconstructions.
- Published in:
- 2010
- By:
- Publication type:
- journal article
Polymeric Alkoxy PBD [2-(4-Biphenylyl)-5-Phenyl-1,3,4-Oxadiazole] for Light-Emitting Diodes.
- Published in:
- Advanced Functional Materials, 2001, v. 11, n. 1, p. 47, doi. 10.1002/1616-3028(200102)11:1<47::AID-ADFM47>3.0.CO;2-T
- By:
- Publication type:
- Article
Scalable method to determine mutations that occur during adaptive evolution of Escherichia coli.
- Published in:
- Biotechnology Letters, 2003, v. 25, n. 5, p. 435, doi. 10.1023/A:1022497310798
- By:
- Publication type:
- Article
Culture perfusion schedules influence the metabolic activity and granulocyte-macrophage colony-stimulating factor production rates of human bone marrow stromal cells.
- Published in:
- Journal of Cellular Physiology, 1991, v. 147, n. 2, p. 344, doi. 10.1002/jcp.1041470221
- By:
- Publication type:
- Article
Pangenome analysis of Enterobacteria reveals richness of secondary metabolite gene clusters and their associated gene sets.
- Published in:
- Synthetic & Systems Biotechnology, 2022, v. 7, n. 3, p. 900, doi. 10.1016/j.synbio.2022.04.011
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- Publication type:
- Article
A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-11134-7
- By:
- Publication type:
- Article
Experimental promoter identification of a foodborne pathogen Salmonella enterica subsp. enterica serovar Typhimurium with near single base-pair resolution.
- Published in:
- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2023.1271121
- By:
- Publication type:
- Article
Genome-Scale Metabolic Model of Xanthomonas phaseoli pv. manihotis : An Approach to Elucidate Pathogenicity at the Metabolic Level.
- Published in:
- Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.00837
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- Publication type:
- Article
Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30877-5
- By:
- Publication type:
- Article
Genome-scale metabolic models highlight stage-specific differences in essential metabolic pathways in Trypanosoma cruzi.
- Published in:
- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 10, p. 1, doi. 10.1371/journal.pntd.0008728
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- Publication type:
- Article
SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks.
- Published in:
- BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0212-9
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- Publication type:
- Article
Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale.
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0110-6
- By:
- Publication type:
- Article
Antibacterial mechanisms identified through structural systems pharmacology.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-102
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- Publication type:
- Article
The development of a fully-integrated immune response model (FIRM) simulator of the immune response through integration of multiple subset models.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-95
- By:
- Publication type:
- Article
COBRApy: COnstraints-Based Reconstruction and Analysis for Python.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-74
- By:
- Publication type:
- Article
Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. 1, p. 30, doi. 10.1186/1752-0509-6-30
- By:
- Publication type:
- Article
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.
- Published in:
- BMC Systems Biology, 2010, v. 4, p. 140, doi. 10.1186/1752-0509-4-140
- By:
- Publication type:
- Article
Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes.
- Published in:
- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-44
- By:
- Publication type:
- Article
Connecting extracellular metabolomic measurements to intracellular flux states in yeast.
- Published in:
- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-37
- By:
- Publication type:
- Article
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.
- Published in:
- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-79
- By:
- Publication type:
- Article
Three factors underlying incorrect in silico predictions of essential metabolic genes.
- Published in:
- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-14
- By:
- Publication type:
- Article
Migration patterns, ambient temperature, and growth of Icelandic cod (Gadus morhua ): evidence from storage tag data.
- Published in:
- Canadian Journal of Fisheries & Aquatic Sciences, 2003, v. 60, n. 11, p. 1409, doi. 10.1139/F03-117
- By:
- Publication type:
- Article
Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-06920-4
- By:
- Publication type:
- Article
A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0.
- Published in:
- BMC Biology, 2018, v. 16, n. 1, p. 1, doi. 10.1186/s12915-018-0555-y
- By:
- Publication type:
- Article
solveME: fast and reliable solution of nonlinear ME models.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1240-1
- By:
- Publication type:
- Article
Coupling S-adenosylmethionine–dependent methylation to growth: Design and uses.
- Published in:
- PLoS Biology, 2019, v. 17, n. 3, p. 1, doi. 10.1371/journal.pbio.2007050
- By:
- Publication type:
- Article
Inferring the metabolism of human orphan metabolites from their metabolic network context affirms human gluconokinase activity.
- Published in:
- Biochemical Journal, 2013, v. 449, n. 2, p. 427, doi. 10.1042/BJ20120980
- By:
- Publication type:
- Article
Escherichia coli non-coding regulatory regions are highly conserved.
- Published in:
- NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae041
- By:
- Publication type:
- Article
Model-driven experimental design workflow expands understanding of regulatory role of Nac in Escherichia coli.
- Published in:
- NAR Genomics & Bioinformatics, 2023, v. 5, n. 1, p. 1, doi. 10.1093/nargab/lqad006
- By:
- Publication type:
- Article
Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli.
- Published in:
- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02516-0
- By:
- Publication type:
- Article
Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus.
- Published in:
- Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02339-z
- By:
- Publication type:
- Article
Genome-scale determination of 5´ and 3´ boundaries of RNA transcripts in Streptomyces genomes.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-00775-w
- By:
- Publication type:
- Article
Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media.
- Published in:
- Scientific Data, 2019, v. 6, n. 1, p. 1, doi. 10.1038/s41597-019-0331-z
- By:
- Publication type:
- Article
Minimal cells, maximal knowledge.
- Published in:
- eLife, 2019, p. 1, doi. 10.7554/eLife.45379
- By:
- Publication type:
- Article
Modeling Red Blood Cell Metabolism in the Omics Era.
- Published in:
- Metabolites (2218-1989), 2023, v. 13, n. 11, p. 1145, doi. 10.3390/metabo13111145
- By:
- Publication type:
- Article
Differential Expression Analysis Utilizing Condition-Specific Metabolic Pathways.
- Published in:
- Metabolites (2218-1989), 2023, v. 13, n. 11, p. 1127, doi. 10.3390/metabo13111127
- By:
- Publication type:
- Article
ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D1164, doi. 10.1093/nar/gky983
- By:
- Publication type:
- Article
Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 6, p. 2901, doi. 10.1093/nar/gky069
- By:
- Publication type:
- Article
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D515, doi. 10.1093/nar/gkv1049
- By:
- Publication type:
- Article
The PurR regulon in Escherichia coli K-12 MG1655.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 15, p. 6456, doi. 10.1093/nar/gkr307
- By:
- Publication type:
- Article
Sensitive and accurate identification of protein–DNA binding events in ChIP-chip assays using higher order derivative analysis.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 5, p. 1656, doi. 10.1093/nar/gkq848
- By:
- Publication type:
- Article
The quantitative metabolome is shaped by abiotic constraints.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23214-9
- By:
- Publication type:
- Article
A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.
- Published in:
- Microbial Biotechnology, 2023, v. 16, n. 6, p. 1203, doi. 10.1111/1751-7915.14257
- By:
- Publication type:
- Article
iML1515, a knowledgebase that computes Escherichia coli traits.
- Published in:
- Nature Biotechnology, 2017, v. 35, n. 10, p. 904, doi. 10.1038/nbt.3956
- By:
- Publication type:
- Article
Optimizing genome-scale network reconstructions.
- Published in:
- Nature Biotechnology, 2014, v. 32, n. 5, p. 447, doi. 10.1038/nbt.2870
- By:
- Publication type:
- Article
Large-scale in silico modeling of metabolic interactions between cell types in the human brain.
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 12, p. 1279, doi. 10.1038/nbt.1711
- By:
- Publication type:
- Article
What is flux balance analysis?
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 3, p. 245, doi. 10.1038/nbt.1614
- By:
- Publication type:
- Article
The transcription unit architecture of the Escherichia coli genome.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 11, p. 1043, doi. 10.1038/nbt.1582
- By:
- Publication type:
- Article
Network-based prediction of human tissue-specific metabolism.
- Published in:
- Nature Biotechnology, 2008, v. 26, n. 9, p. 1003, doi. 10.1038/nbt.1487
- By:
- Publication type:
- Article
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli.
- Published in:
- Nature Biotechnology, 2008, v. 26, n. 6, p. 659, doi. 10.1038/nbt1401
- By:
- Publication type:
- Article