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ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium.
Published in:
EMBO Molecular Medicine, 2011, v. 3, n. 3, p. 167, doi. 10.1002/emmm.201100122
By:
- Holland, Daniel G.;
- Burleigh, Angela;
- Git, Anna;
- Goldgraben, Mae A.;
- Perez-Mancera, Pedro A.;
- Chin, Suet-Feung;
- Hurtado, Antonio;
- Bruna, Alejandra;
- Ali, H. Raza;
- Greenwood, Wendy;
- Dunning, Mark J.;
- Samarajiwa, Shamith;
- Menon, Suraj;
- Rueda, Oscar M.;
- Lynch, Andy G.;
- McKinney, Steven;
- Ellis, Ian O.;
- Eaves, Connie J.;
- Carroll, Jason S.;
- Curtis, Christina
Publication type:
Article
Unravelling patient pathways in the context of antibacterial resistance in East Africa.
Published in:
BMC Infectious Diseases, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12879-023-08392-9
By:
- Keenan, Katherine;
- Fredricks, Kathryn J.;
- Al Ahad, Mary Abed;
- Neema, Stella;
- Mwanga, Joseph R.;
- Kesby, Mike;
- Mushi, Martha F.;
- Aduda, Annette;
- Green, Dominique L.;
- Lynch, Andy G.;
- Huque, Sarah I.;
- Mmbaga, Blandina T.;
- Worthington, Hannah;
- Kansiime, Catherine;
- Olamijuwon, Emmanuel;
- Ntinginya, Nyanda E.;
- Loza, Olga;
- Bazira, Joel;
- Maldonado-Barragán, Antonio;
- Smith, VAnne
Publication type:
Article
New androgen receptor genomic targets show an interaction with the ETS1 transcription factor.
Published in:
EMBO Reports, 2007, v. 8, n. 9, p. 871, doi. 10.1038/sj.embor.7401046
By:
- Massie, Charles E;
- Adryan, Boris;
- Barbosa-Morais, Nuno L;
- Lynch, Andy G;
- Tran, Maxine G;
- Neal, David E;
- Mills, Ian G
Publication type:
Article
multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples.
Published in:
Nucleic Acids Research, 2015, v. 43, n. 9, p. e61, doi. 10.1093/nar/gkv135
By:
- Josephidou, Malvina;
- Lynch, Andy G.;
- Tavaré, Simon
Publication type:
Article
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.
Published in:
Nucleic Acids Research, 2010, v. 38, n. 3, p. e17, doi. 10.1093/nar/gkp942
By:
- Barbosa-Morais, Nuno L.;
- Dunning, Mark J.;
- Samarajiwa, Shamith A.;
- Darot, Jeremy F. J.;
- Ritchie, Matthew E.;
- Lynch, Andy G.;
- Tavaré, Simon
Publication type:
Article
Driver mutations in TP53 are ubiquitous in high grade serous carcinoma of the ovary.
Published in:
Journal of Pathology, 2010, v. 221, n. 1, p. 49, doi. 10.1002/path.2696
By:
- Ahmed, Ahmed Ashour;
- Etemadmoghadam, Dariush;
- Temple, Jillian;
- Lynch, Andy G;
- Riad, Mohamed;
- Sharma, Raghwa;
- Stewart, Colin;
- Fereday, Sian;
- Caldas, Carlos;
- deFazio, Anna;
- Bowtell, David;
- Brenton, James D
Publication type:
Article
Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma.
Published in:
Nature Genetics, 2015, v. 47, n. 9, p. 1038, doi. 10.1038/ng.3357
By:
- Northen, Helen;
- He, Miao;
- Fitzgerald, Rebecca C;
- Ross-Innes, Caryn S;
- Humphray, Sean;
- Malhotra, Shalini;
- Warren, Andrew;
- Ross, Mark;
- Bentley, David;
- O'Donovan, Maria;
- di Pietro, Massimiliano;
- Weaver, Jamie M J;
- Cheetham, R Keira;
- Ivakhno, Sergii;
- Kingsbury, Zoya;
- Becq, Jennifer;
- Lynch, Andy G
Publication type:
Article
Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.
Published in:
Nature Genetics, 2014, v. 46, n. 8, p. 837, doi. 10.1038/ng.3013
By:
- Weaver, Jamie M J;
- Ross-Innes, Caryn S;
- Shannon, Nicholas;
- Lynch, Andy G;
- Forshew, Tim;
- Barbera, Mariagnese;
- Murtaza, Muhammed;
- Ong, Chin-Ann J;
- Lao-Sirieix, Pierre;
- Dunning, Mark J;
- Smith, Laura;
- Smith, Mike L;
- Anderson, Charlotte L;
- Carvalho, Benilton;
- O'Donovan, Maria;
- Underwood, Timothy J;
- May, Andrew P;
- Grehan, Nicola;
- Hardwick, Richard;
- Davies, Jim
Publication type:
Article
Calling Sample Mix-Ups in Cancer Population Studies.
Published in:
PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0041815
By:
- Lynch, Andy G.;
- Suet-Feung Chin;
- Dunning, Mark J.;
- Caldas, Carlos;
- Tavaré, Simon;
- Curtis, Christina;
- Toland, Amanda Ewart
Publication type:
Article
Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data.
Published in:
Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00399
By:
- Cairns, Jonathan;
- Lynch, Andy G.;
- Tavaré, Simon
Publication type:
Article
The pitfalls of platform comparison: DNA copy numberarray technologies assessed.
Published in:
BMC Genomics, 2009, v. 10, p. 588, doi. 10.1186/1471-2164-10-588
By:
- Curtis, Christina;
- Lynch, Andy G.;
- Dunning, Mark J.;
- Spiteri, Inmaculada;
- Marioni, John C.;
- Hadfield, James;
- Suet-Feung Chin;
- Brenton, James D.;
- Tavaré, Simon;
- Caldas, Carlos
Publication type:
Article
Identification and correction of previouslyunreported spatial phenomena using raw IlluminaBeadArray data.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 208, doi. 10.1186/1471-2105-11-208
By:
- Smith, Mike L.;
- Dunning, Mark J.;
- Tavaré, Simon;
- Lynch, Andy G.
Publication type:
Article
Statistical issues in the analysis of Illumina data.
Published in:
BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-85
By:
- Dunning, Mark J.;
- Barbosa-Morais, Nuno L.;
- Lynch, Andy G.;
- Tavaré, Simon;
- Ritchie, Matthew E.
Publication type:
Article
BeadArray Expression Analysis Using Bioconductor.
Published in:
PLoS Computational Biology, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pcbi.1002276
By:
- Ritchie, Matthew E.;
- Dunning, Mark J.;
- Smith, Mike L.;
- Wei Shi;
- Lynch, Andy G.
Publication type:
Article
5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 69, doi. 10.1186/s13059-015-0605-5
By:
- Uribe-Lewis, Santiago;
- Stark, Rory;
- Carroll, Thomas;
- Dunning, Mark J;
- Bachman, Martin;
- Yoko Ito;
- Stojic, Lovorka;
- Silvia Halim;
- Vowler, Sarah L;
- Lynch, Andy G;
- Delatte, Benjamin;
- de Bony, Eric J;
- Colin, Laurence;
- Defrance, Matthieu;
- Krueger, Felix;
- Silva, Ana-Luisa;
- Hoopen, Rogier ten;
- Ibrahim, Ashraf EK;
- Fuks, François;
- Murrell, Adele
Publication type:
Article
Predominance of multidrug-resistant bacteria causing urinary tract infections among symptomatic patients in East Africa: a call for action.
Published in:
JAC-Antimicrobial Resistance, 2024, v. 6, n. 1, p. 1, doi. 10.1093/jacamr/dlae019
By:
- Maldonado-Barragán, Antonio;
- Mshana, Stephen E;
- Keenan, Katherine;
- Ke, Xuejia;
- Gillespie, Stephen H;
- Stelling, John;
- Maina, John;
- Bazira, Joel;
- Muhwezi, Ivan;
- Mushi, Martha F;
- Green, Dominique L;
- Kesby, Mike;
- Lynch, Andy G;
- Sabiiti, Wilber;
- Sloan, Derek J;
- Sandeman, Alison;
- Kiiru, John;
- Asiimwe, Benon;
- Holden, Matthew T G
Publication type:
Article
The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.
Published in:
Nature, 2012, v. 486, n. 7403, p. 346, doi. 10.1038/nature10983
By:
- Curtis, Christina;
- Shah, Sohrab P.;
- Chin, Suet-Feung;
- Turashvili, Gulisa;
- Rueda, Oscar M.;
- Dunning, Mark J.;
- Speed, Doug;
- Lynch, Andy G.;
- Samarajiwa, Shamith;
- Yuan, Yinyin;
- Gräf, Stefan;
- Ha, Gavin;
- Haffari, Gholamreza;
- Bashashati, Ali;
- Russell, Roslin;
- McKinney, Steven;
- Caldas, Carlos;
- Aparicio, Samuel;
- Curtis†, Christina;
- Brenton, James D.
Publication type:
Article
Synthetic lethality between androgen receptor signalling and the PARP pathway in prostate cancer.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00393-y
By:
- Asim, Mohammad;
- Tarish, Firas;
- Zecchini, Heather I.;
- Sanjiv, Kumar;
- Gelali, Eleni;
- Massie, Charles E.;
- Baridi, Ajoeb;
- Warren, Anne Y.;
- Wanfeng Zhao;
- Ogris, Christoph;
- McDuffus, Leigh-Anne;
- Mascalchi, Patrice;
- Shaw, Greg;
- Dev, Harveer;
- Wadhwa, Karan;
- Wijnhoven, Paul;
- Forment, Josep V.;
- Lyons, Scott R.;
- Lynch, Andy G.;
- O’Neill, Cormac
Publication type:
Article
BeadDataPackR: A Tool to Facilitate the Sharing of Raw Data from Illumina BeadArray Studies.
Published in:
Cancer Informatics, 2010, n. 8, p. 217
By:
- Smith, Mike L.;
- Lynch, Andy G.
Publication type:
Article
Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53.
Published in:
PLoS Genetics, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pgen.1005053
By:
- Kirschner, Kristina;
- Samarajiwa, Shamith A.;
- Cairns, Jonathan M.;
- Menon, Suraj;
- Pérez-Mancera, Pedro A.;
- Tomimatsu, Kosuke;
- Bermejo-Rodriguez, Camino;
- Ito, Yoko;
- Chandra, Tamir;
- Narita, Masako;
- Lyons, Scott K.;
- Lynch, Andy G.;
- Kimura, Hiroshi;
- Ohbayashi, Tetsuya;
- Tavaré, Simon;
- Narita, Masashi
Publication type:
Article
Publisher Correction: Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data.
Published in:
Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31524-0
By:
- Farmery, James H. R.;
- Smith, Mike L.;
- NIHR BioResource - Rare Diseases;
- Lynch, Andy G.
Publication type:
Article
The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment.
Published in:
BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-540
By:
- Lynch, Andy G;
- Hadfield, James;
- Dunning, Mark J;
- Osborne, Michelle;
- Thorne, Natalie P;
- Tavaré, Simon
Publication type:
Article
The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment.
Published in:
BMC Genomics, 2010, v. 11, p. 540, doi. 10.1186/1471-2164-11-540
By:
- Lynch, Andy G.;
- Hadfield, James;
- Dunning, Mark J.;
- Osborne, Michelle;
- Thorne, Natalie P.;
- Tavaré, Simon
Publication type:
Article
BayesPeak—an R package for analysing ChIP-seq data.
Published in:
Bioinformatics, 2011, v. 27, n. 5, p. 713, doi. 10.1093/bioinformatics/btq685
By:
- Cairns, Jonathan;
- Spyrou, Christiana;
- Stark, Rory;
- Smith, Mike L.;
- Lynch, Andy G.;
- Tavaré, Simon
Publication type:
Article
Low-cost and clinically applicable copy number profiling using repeat DNA.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08681-8
By:
- Abujudeh, Sam;
- Zeki, Sebastian S.;
- van Lanschot, Meta C.J.;
- Pusung, Mark;
- Weaver, Jamie M.J.;
- Li, Xiaodun;
- Noorani, Ayesha;
- Metz, Andrew J.;
- Bornschein, Jan;
- Bower, Lawrence;
- Miremadi, Ahmad;
- Fitzgerald, Rebecca C.;
- Morrissey, Edward R.;
- Lynch, Andy G.
Publication type:
Article

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