Works matching DE "PHYLOGENY"

Results: 5000

Decoupling both local and global abundance from global range size, challenging the abundance-occupancy relationship in birds.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.95857

By:

Nakagawa, Shinichi;
Cornwell, William K.;
Callaghan, Corey T.

Publication type:

Article

'gitana' (phyloGenetic Imaging Tool for Adjusting Nodes and other Arrangements), a tool for plotting phylogenetic trees into ready-to-publish figures.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06178-1

By:

Galisteo, Cristina;
de la Haba, Rafael R.

Publication type:

Article

Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage- specific genomic imprinting of ZDBF2.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.94502

By:

Hisato Kobayashi;
Tatsushi Igaki;
Soichiro Kumamoto;
Keisuke Tanaka;
Tomoya Takashima;
Nagaoka, So I.;
Shunsuke Suzuki;
Masaaki Hayashi;
Renfree, Marilyn B.;
Manabu Kawahara;
Shun Saito;
Toshihiro Kobayashi;
Hiroshi Nagashima;
Hitomi Matsunari;
Kazuaki Nakano;
Ayuko Uchikura;
Hiroshi Kiyonari;
Mari Kaneko;
Hiroo Imai;
Kazuhiko Nakabayashi

Publication type:

Article

Crystal structure and catalytic mechanism of PL35 family glycosaminoglycan lyases with an ultrabroad substrate spectrum.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.102422

By:

Lin Wei;
Hai-Yan Cao;
Ruyi Zou;
Min Du;
Qingdong Zhang;
Danrong Lu;
Xiangyu Xu;
Yingying Xu;
Wenshuang Wang;
Xiu-Lan Chen;
Yu-Zhong Zhang;
Fuchuan Li

Publication type:

Article

A call for reform: implementing genome‐based approaches for species classification in Glomeromycotina.

Published in:

New Phytologist, 2025, v. 247, n. 1, p. 50, doi. 10.1111/nph.70148

By:

Corradi, Nicolas;
Antunes, Pedro Madeira;
Magurno, Franco

Publication type:

Article

Diel activity correlates with colour pattern morphology of heterobranch sea slugs.

Published in:

Journal of Animal Ecology, 2025, v. 94, n. 6, p. 1165, doi. 10.1111/1365-2656.70036

By:

van den Berg, Cedric P.;
Hassler, Gabriel W.;
Blomberg, Simone P.;
Wilson, Nerida G.;
Suchard, Marc A.;
Cheney, Karen L.

Publication type:

Article

Plastid genomic features and phylogenetic placement in Rosa (Rosaceae) through comparative analysis.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06734-0

By:

Jiang, Hui;
He, Shuilian;
He, Jun;
Zuo, Yunjuan;
Guan, Wenling;
Zhao, Yan;
Li, Xuejiao;
Meng, Jing

Publication type:

Article

扇穗茅全长转录组 SSR 特征分析及分子标记开发.

Published in:

Acta Prataculturae Sinica, 2025, v. 35, n. 7, p. 107, doi. 10.11686/cyxb2024304

By:

富贵;
刘玉萍;
苏旭;
曲荣举;
才让扎西

Publication type:

Article

A comparison of phylogenomic inference pipelines for low‐coverage whole‐genome sequencing in Formica ants.

Published in:

Systematic Entomology, 2025, v. 50, n. 3, p. 611, doi. 10.1111/syen.12670

By:

Zhang, Junxia;
Lin, Long;
Mu, Yannan;
Brelsford, Alan;
Purcell, Jessica

Publication type:

Article

Phylogeny of euophryine jumping spiders from ultra‐conserved elements, with evidence on the intersexual coevolution of genitalia (Araneae: Salticidae: Euophryini).

Published in:

Systematic Entomology, 2025, v. 50, n. 3, p. 554, doi. 10.1111/syen.12669

By:

Li, Zhaoyi;
Zhang, Feng;
Zhang, Wenqiang;
Marathe, Kiran;
Maddison, Wayne P.;
Zhang, Junxia

Publication type:

Article

Gastritis over Gastrisus Sharp (Coleoptera: Staphylinidae: Xanthopygina): Resolving a major taxonomic impediment with phylogenomics.

Published in:

Systematic Entomology, 2025, v. 50, n. 3, p. 449, doi. 10.1111/syen.12662

By:

Brunke, Adam J.;
Chatzimanolis, Stylianos

Publication type:

Article

Different orthology inference algorithms generate similar predicted orthogroups among Brassicaceae species.

Published in:

Applications in Plant Sciences, 2025, v. 13, n. 1, p. 1, doi. 10.1002/aps3.11627

By:

Liao, Irene T.;
Sears, Karen E.;
Hileman, Lena C.;
Nikolov, Lachezar A.

Publication type:

Article

Six Newly Sequenced Chloroplast Genomes From Quadriflagellate Chlamydomonadales (Chlorophyceae): Phylogeny and Comparative Genome Analyses Open Access.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 5, p. 1, doi. 10.1093/gbe/evaf074

By:

Chen, Yangliang;
Xiong, Qian;
Dai, Qingyu;
Liu, Guoxiang

Publication type:

Article

Multiple Horizontal Transfers of Immune Genes Between Distantly Related Teleost Fishes Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 5, p. 1, doi. 10.1093/molbev/msaf107

By:

Policarpo, Maxime;
Salzburger, Walter;
Maumus, Florian;
Gilbert, Clément

Publication type:

Article

Quantifying Transcriptome Turnover on Phylogenies by Modeling Gene Expression as a Binary Trait Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 5, p. 1, doi. 10.1093/molbev/msaf106

By:

Thompson, Ammon;
May, Michael R;
Hopkins, Ben R;
Riedl, Nerisa;
Barmina, Olga;
Liebeskind, Benjamin J;
Zhao, Li;
Begun, David;
Kopp, Artyom

Publication type:

Article

Comparative Phylogenetics Reveal Clade-specific Drivers of Recombination Rate Evolution Across Vertebrates Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 5, p. 1, doi. 10.1093/molbev/msaf100

By:

Szasz-Green, Taylor;
Shores, Katherynne;
Vanga, Vineel;
Zacharias, Luke;
Lawton, Andrew K;
Dapper, Amy L

Publication type:

Article

When the Past Fades: Detecting Phylogenetic Signal with SatuTe Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 5, p. 1, doi. 10.1093/molbev/msaf090

By:

Manuel, Cassius;
Sakalli, Enes;
Schmidt, Heiko A;
Viñas, Carme;
Haeseler, Arndt von;
Elgert, Christiane

Publication type:

Article

Analysis of SRO gene family in Nitraria sibirica Pall. and the function of NsSRO1a in improving plant drought tolerance.

Published in:

Tree Physiology, 2025, v. 45, n. 5, p. 1, doi. 10.1093/treephys/tpaf050

By:

Duan, Rongfeng;
Zhang, Hongxia;
Zhao, Yanqiu;
Zhang, Huilong;
Li, Rong;
Wan, Xihong;
Zhang, Shuaihui;
Ying, Pengyu;
Zhang, Huaxin;
Yang, Xiuyan

Publication type:

Article

Taxonomic Reevaluation of Arius Species Complex (Ariidae): Integrating Morphology and Molecular Data for Species Validation.

Published in:

Fishtaxa-Journal of Fish Taxonomy, 2025, n. 35, p. 1

By:

Torres, Elena

Publication type:

Article

甘肃临洮地区绵羊捻转血矛线虫病流行情况及系统发育分析.

Published in:

China Herbivore Science, 2025, v. 45, n. 3, p. 106, doi. 10.3969/j.issn.2095-3887.2024.00.090

By:

李永光;
盖文燕;
郑小红;
吴耀辉;
雒和静;
王筠茹

Publication type:

Article

Addressing taxonomic shortfalls in Neotropical gastrotrichs: a new genus and species of freshwater Gastrotricha (Chaetonotida: Paucitubulatina) from Brazil.

Published in:

Invertebrate Systematics, 2025, v. 39, n. 5, p. 1, doi. 10.1071/IS25003

By:

Minowa, Axell K.;
Kieneke, Alexander;
Balsamo, Maria;
Guidi, Loretta;
Garraffoni, André R. S.

Publication type:

Article

Skeletal trait measurements for thousands of bird species.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05234-y

By:

Weeks, Brian C.;
Zhou, Zhizhuo;
Probst, Charlotte M.;
Berv, Jacob S.;
O'Brien, Bruce;
Benz, Brett W.;
Skeen, Heather R.;
Ziebell, Mark;
Bodt, Louise;
Fouhey, David F.

Publication type:

Article

Integrative Taxonomy of Tereancistrum spp. (Monopisthocotyla: Dactylogyridae) Parasites of the Gills of Freshwater Fishes from the Caatinga Domain, Brazil.

Published in:

Pathogens, 2025, v. 14, n. 5, p. 467, doi. 10.3390/pathogens14050467

By:

Yamada, Priscilla de Oliveira Fadel;
de Sousa, Wallas Benevides Barbosa;
Ebert, Mariana Bertholdi;
Diniz, Maria Fernanda Barros Gouveia;
Tavares-Dias, Marcos;
da Silva, Reinaldo José;
Yamada, Fabio Hideki

Publication type:

Article

Genetic Diversity in Phytoplasmas from X-Disease Group Based in Analysis of idpA and imp Genes.

Published in:

Microorganisms, 2025, v. 13, n. 5, p. 1170, doi. 10.3390/microorganisms13051170

By:

Alessio, Florencia Ivette;
Bongiorno, Vanina Aylen;
Marcone, Carmine;
Conci, Luis Rogelio;
Fernandez, Franco Daniel

Publication type:

Article

Widespread Detection of Fowl Adenovirus Serotype 2/11 Species D Among Cases of Inclusion Body Hepatitis–Hydropericardium Syndrome in Chickens in Egypt.

Published in:

Microorganisms, 2025, v. 13, n. 5, p. 1107, doi. 10.3390/microorganisms13051107

By:

Abdellatif, Doaa M.;
El-Sawah, Azza A.;
Elkady, Magdy F.;
Ali, Ahmed;
Abdelaziz, Khaled;
Shany, Salama A. S.

Publication type:

Article

Genetic and Morphological Evidence From a Group of Rare African Free‐Tailed Bats Reveals a New Subgenus Within Mops.

Published in:

Ecology & Evolution (20457758), 2025, v. 15, n. 5, p. 1, doi. 10.1002/ece3.71288

By:

Torrent, Laura;
Garin, Inazio;
Aihartza, Joxerra;
Méndez‐Rodríguez, Aline;
Nguema Alene, Esther Abeme;
Juste, Javier

Publication type:

Article

Complete Mitochondrial Genome of Chlorogomphus papilio (Odonata: Anisoptera: Chlorogomphidae) and Phylogenetic Analyses.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 493, doi. 10.3390/biology14050493

By:

Jin, Xiaoxiao;
Lin, Xiaojia;
Wang, Simeng;
Fang, Jie

Publication type:

Article

Functional and Morphological Differences in the Play Face and Full Play Face in Lowland Gorillas, a Hominid Species: Implications for the Evolutionary Roots of Smile and Laugh Face.

Published in:

American Journal of Biological Anthropology, 2025, v. 187, n. 1, p. 1, doi. 10.1002/ajpa.70061

By:

Cordoni, Giada;
Brescini, Martina;
Pirarba, Luca;
Giaretto, Florinda;
Norscia, Ivan

Publication type:

Article

First Report of Fusarium annulatum Causing Bulb Rot Disease of Tulip.

Published in:

Horticulturae, 2025, v. 11, n. 5, p. 518, doi. 10.3390/horticulturae11050518

By:

Liu, Quanhong;
Miura, Shu;
Liao, Tianlan;
Luo, Jinyan;
Shen, Ying;
Chen, Lei;
Li, Chengkai;
Li, Bin;
An, Qianli

Publication type:

Article

Molecular Identification of Fungi Isolated from Root of Broad Bean (Vicia faba L.) Infected with Rot Root Disease.

Published in:

Iranian Journal of Medical Microbiology, 2025, v. 19, n. 1, p. 62, doi. 10.30699/ijmm.19.1.62

By:

Kadim, Asia N.;
Kasim, Ali A.;
Daghir, Ghassan Mahdi

Publication type:

Article

Listeriolysin O Gene-Based Detection and Phylogenetic Investigation of Listeria monocytogenes in Food and Environmental Samples.

Published in:

Iranian Journal of Medical Microbiology, 2025, v. 19, n. 1, p. 40, doi. 10.30699/ijmm.19.1.40

By:

Mohammadjani, Mahdis;
Harzandi, Naser;
Haddadi, Azam

Publication type:

Article

Deciphering the First Mitochondrial Genome of the Liolophura Pilsbry, 1893 Genus: An Extensive Phylogenetic Study Within the Chitonidae Family.

Published in:

Genes, 2025, v. 16, n. 5, p. 606, doi. 10.3390/genes16050606

By:

Zhou, Qianqian;
Liu, Zhiyong;
Dong, Weifeng;
Xing, Bingpeng;
Luo, Site;
Xiang, Peng

Publication type:

Article

The Complete Mitochondrial Genome of Petalocephala arcuata Cai Et Kuoh, 1992 (Hemiptera: Cicadellidae: Ledrinae: Petalocephalini) and Its Phylogenetic Implications.

Published in:

Genes, 2025, v. 16, n. 5, p. 567, doi. 10.3390/genes16050567

By:

Li, Yujian;
Guo, Yihong;
Li, Ran;
Liu, Yongcheng;
Xue, Chao;
Jiang, Lina;
Jiang, Sai;
Wang, Wei;
Yi, Xianfeng

Publication type:

Article

Comparative Mitogenomics of Wonder Geckos (Sphaerodactylidae: Teratoscincus Strauch, 1863): Uncovering Evolutionary Insights into Protein-Coding Genes.

Published in:

Genes, 2025, v. 16, n. 5, p. 531, doi. 10.3390/genes16050531

By:

Zheng, Dongqing;
Ma, Rongrong;
Guo, Xianguang;
Li, Jun

Publication type:

Article

Mitochondrial Genomes of Six Snakes (Lycodon) and Implications for Their Phylogeny.

Published in:

Genes, 2025, v. 16, n. 5, p. 493, doi. 10.3390/genes16050493

By:

Zhu, Fei;
Lu, Anqiong;
Sun, Ke

Publication type:

Article

Clarification of the Taxonomic Status of Two Alloxysta Species Through Genetic Analysis (Figitidae: Charipinae).

Published in:

Diversity (14242818), 2025, v. 17, n. 5, p. 362, doi. 10.3390/d17050362

By:

Ferrer-Suay, Mar;
Cuesta-Porta, Victor;
Selfa, Jesús;
Pujade-Villar, Juli

Publication type:

Article

Systematic Revision of the Genus Charmus Karsch, 1879 (Scorpiones: Buthidae), and Assessment of Its Phylogenetic Position Within Buthidae C. L. Koch, 1837 Using Ultraconserved Elements.

Published in:

Diversity (14242818), 2025, v. 17, n. 5, p. 354, doi. 10.3390/d17050354

By:

Joshi, Mihir;
Deshpande, Shubhankar;
Ukale, Sajiri;
Gowande, Gaurang;
Bilat, Julia;
Kovařík, František;
Mottaz, Hélène;
Šťáhlavský, František;
Bastawade, Deshabhushan;
Monod, Lionel;
Sulakhe, Shauri

Publication type:

Article

Denser Mitogenomic Sampling for Exploring the Phylogeny of Tellinoidea (Mollusca: Bivalvia).

Published in:

Diversity (14242818), 2025, v. 17, n. 5, p. 303, doi. 10.3390/d17050303

By:

Tang, Weikang;
Xu, Tao;
Gong, Jihang;
Kong, Lingfeng

Publication type:

Article

Deep palaeoproteomic profiling of archaeological human brains.

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0324246

By:

Morton-Hayward, Alexandra;
Flannery, Sarah;
Vendrell, Iolanda;
Fischer, Roman

Publication type:

Article

The Complete Mitochondrial Genome of Agrilus zanthoxylumi Li, 1989 (Buprestidae: Agrilinae): Genome Characterization and Phylogenetic Implications.

Published in:

Journal of the Entomological Research Society, 2025, v. 27, n. 1, p. 121, doi. 10.51963/jers.v27i1.2756

By:

Jingjing LI;
Bin YAN;
Haitian SONG;
Maofa YANG

Publication type:

Article

Recent Developments in Species Delimitation and Taxonomy Considered in the Context of the Unified Species Concept.

Published in:

Herpetologica, 2025, v. 81, n. 2, p. 95, doi. 10.1655/Herpetologica-D-25-00001

By:

de Queiroz, Kevin

Publication type:

Article

Historical DNA Places an Apparently Extinct Gladiator Frog in the Phylogeny of the Boana pulchella Group (Anura: Hylidae).

Published in:

Herpetologica, 2025, v. 81, n. 2, p. 117, doi. 10.1655/Herpetologica-D-24-00036

By:

Nakamura, Daniel Y.M.;
Pinheiro, Paulo D.P.;
Lyra, Mariana L.;
Faivovich, Julián;
Grant, Taran

Publication type:

Article

Correction to "Hantaan Virus (HTNV) Human Infection on Jeju Island, South Korea: Unique Phylogeny and Epidemiology of HTNV".

Published in:: 2025
Publication type:: Correction Notice

Russula lakhanpalii, a new Japanese record collected in Aomori Prefecture.

Published in:

Japanese Journal of Mycology, 2024, v. 65, n. 2, p. 47, doi. 10.18962/jjom.jjom.R6-3

By:

Masaya SHIMIZU;
Akio TONOUCHI

Publication type:

Article

Hidden syndinian and perkinsid infections in dinoflagellate hosts revealed by single-cell transcriptomics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae188

By:

Cooney, Elizabeth C;
Leander, Brian S;
Keeling, Patrick J

Publication type:

Article

Microbially mediated sulfur oxidation coupled with arsenate reduction within oligotrophic mining–impacted habitats.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae110

By:

Sun, Xiaoxu;
Chen, Qizhi;
Häggblom, Max M;
Liu, Guoqiang;
Kong, Tianle;
Huang, Duanyi;
Chen, Zhenyu;
Li, Fangbai;
Li, Baoqin;
Sun, Weimin

Publication type:

Article

Phylogenomic position of eupelagonemids, abundant, and diverse deep-ocean heterotrophs.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae040

By:

Lax, Gordon;
Okamoto, Noriko;
Keeling, Patrick J

Publication type:

Article

Genomic basis of environmental adaptation in the widespread poly-extremophilic Exiguobacterium group.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad020

By:

Shen, Liang;
Liu, Yongqin;
Chen, Liangzhong;
Lei, Tingting;
Ren, Ping;
Ji, Mukan;
Song, Weizhi;
Lin, Hao;
Su, Wei;
Wang, Sheng;
Rooman, Marianne;
Pucci, Fabrizio

Publication type:

Article

Characterization and phylogenetic analysis of the complete mitochondrial genome of Fomitopsis palustris (Berk. & M.A. Curtis) Gilb. & Ryvarden, 1985 (Polyporales: Fomitopsidaceae).

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 6, p. 532, doi. 10.1080/23802359.2025.2509806

By:

Gao, Wei;
Chen, Shuyi;
Li, Qiang

Publication type:

Article

The complete mitochondrial genome of Tenguna medogensis (Hemiptera: Dictyopharidae).

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 6, p. 522, doi. 10.1080/23802359.2025.2509805

By:

Yu, Fang;
Song, Zhi-Shun

Publication type:

Article