Works matching DE "GENE libraries"

Results: 1568

Discovery of protein interactors of SUGARWINs in Saccharum officinarum using cDNA library screening.

Published in:

Functional Plant Biology, 2025, v. 52, n. 7, p. 1, doi. 10.1071/FP25049

By:

Parvaiz, Aqsa;
Zafar, Muhammad Mubashar;
Joyia, Faiz Ahmad;
Anwar, Sultana;
Smertenko, Andrei;
Kamal, Hira;
Zafar, Saba;
Subhan, Mishal;
Khan, Muhammad Sarwar;
Seleiman, Mahmoud F.;
Alotaibi, Majed A.;
Ercisli, Sezai;
Mustafa, Ghulam;
Jiang, Xuefei

Publication type:

Article

Chromosome-level genome assembly of the wasp Vespa mandarinia (Hymenoptera: Vespidae).

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05749-4

By:

Niu, Xiao-Yun;
Shi, Yuan-Chong;
Mo, Hai-Feng;
Yang, Pu

Publication type:

Article

Comparative chloroplast genomics of wild-type Panicum miliaceum cv. ATL1 and its M<sub>4</sub> mutant line: insights for molecular breeding applications.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06999-5

By:

Kumar, Ayushi;
Rajasekaran, Ravikesavan;
Krishnamoorthy, Iyanar;
Alagarswamy, Senthil;
Chandrakumar, K.;
Pulapet, Sowmya;
Markkandan, Kesavan;
Kanagarajan, Selvaraju;
Narayanan, Manikanda Boopathi

Publication type:

Article

Mitochondrial DNA Evidence for Community Building and Population Dynamics at a Multi-Phase Roman Site (Gabii, Italy, 8th Century bc– 2nd Century ad).

Published in:

Journal of Mediterranean Archaeology, 2024, v. 37, n. 2, p. 139, doi. 10.1558/jma.33474

By:

Killgrove, Kristina;
Klunk, Jennifer;
Acosta, Andrea N.;
Tapson, Madeline;
Mogetta, Marcello;
Banducci, Laura M.;
Gallone, Anna;
Evans, J. Marilyn;
Motta, Laura;
Cohen, Sheira;
Moses, Victoria C.;
Terrenato, Nicola

Publication type:

Article

Stable preservation and recovery of methylation marks from FTA elute cards in species with nucleated red blood cells using a customized DNA extraction method.

Published in:

PLoS ONE, 2025, v. 20, n. 7, p. 1, doi. 10.1371/journal.pone.0329019

By:

Gerber, Livia;
Whiteley, Sarah L.;
Hahn, Erin E.;
Holleley, Clare E.

Publication type:

Article

Development and Application of Transposable Element-Based Chromosomal Markers for the St Genome in Triticeae.

Published in:

Cytogenetic & Genome Research, 2019, v. 159, n. 4, p. 215, doi. 10.1159/000504690

By:

Liu, Ruijuan;
Yu, Feng;
Wei, Linna;
Liu, Bo;
Liu, Demei;
Dou, Quanwen

Publication type:

Article

Adenylyl cyclase regulates heavy metal sensitivity, bikaverin production and plant tissue colonization in Fusarium proliferatum.

Published in:

Journal of Basic Microbiology, 2010, v. 50, n. 1, p. 59, doi. 10.1002/jobm.200900113

By:

Kohut, Gábor;
OIáh, Brigitta;
Adam, Attila L.;
Garcia-Martinez, Jorge;
Hornok, László

Publication type:

Article

Expression of a senescence-associated cysteine protease gene related to peel pitting of navel orange (Citrus sinensis L. Osbeck).

Published in:

Plant Cell, Tissue & Organ Culture, 2009, v. 98, n. 3, p. 281

By:

Vasiliki Falara;
Angelos Kanellis

Publication type:

Article

Establishment of a cDNA library from Bambusa edulis Murno in vitro-grown shoots.

Published in:

Plant Cell, Tissue & Organ Culture, 2008, v. 95, n. 1, p. 21, doi. 10.1007/s11240-008-9409-6

By:

Nein-Tzu Liu;
Fu-Hui Wu;
Hsin-Sheng Tsay;
Wei-Chin Chang;
Choun-Sea Lin

Publication type:

Article

Digital differential display tools for mining microsatellite containing organism, organ and tissue.

Published in:

Plant Cell, Tissue & Organ Culture, 2008, v. 94, n. 3, p. 281, doi. 10.1007/s11240-008-9372-2

By:

Ayse Ince;
Mehmet Karaca;
Mehmet Bilgen;
A. Onus

Publication type:

Article

Construction and characterization of a BAC library for sunflower (Helianthus annuus L.).

Published in:

Euphytica, 2004, v. 138, n. 2, p. 177, doi. 10.1023/B:EUPH.0000046803.00050.ec

By:

Özdemir, Nehir;
Horn, Renate;
Friedt, Wolfgang

Publication type:

Article

Assessment of EST- and genomic microsatellite markers for variety discrimination and genetic diversity studies in wheat.

Published in:

Euphytica, 2003, v. 133, n. 3, p. 359, doi. 10.1023/A:1025778227751

By:

Leigh, Fiona;
Lea, Vince;
Law, John;
Wolters, Petra;
Powell, Wayne;
Donini, Paolo

Publication type:

Article

Diversity of Synechococcus at the Martha's Vineyard Coastal Observatory: Insights from Culture Isolations, Clone Libraries, and Flow Cytometry.

Published in:

Microbial Ecology, 2016, v. 71, n. 2, p. 276, doi. 10.1007/s00248-015-0644-1

By:

Hunter-Cevera, Kristen;
Post, Anton;
Peacock, Emily;
Sosik, Heidi

Publication type:

Article

Antibiotic Resistance is Widespread in Urban Aquatic Environments of Rio de Janeiro, Brazil.

Published in:

Microbial Ecology, 2014, v. 68, n. 3, p. 441, doi. 10.1007/s00248-014-0422-5

By:

Coutinho, Felipe;
Silveira, Cynthia;
Pinto, Leonardo;
Salloto, Gigliola;
Cardoso, Alexander;
Martins, Orlando;
Vieira, Ricardo;
Clementino, Maysa

Publication type:

Article

Composition and Stability of the Microbial Community inside the Digestive Tract of the Aquatic Crustacean Daphnia magna.

Published in:

Microbial Ecology, 2011, v. 62, n. 4, p. 882, doi. 10.1007/s00248-011-9886-8

By:

Freese, Heike;
Schink, Bernhard

Publication type:

Article

Characterization of the Active Bacterial Community Involved in Natural Attenuation Processes in Arsenic-Rich Creek Sediments.

Published in:

Microbial Ecology, 2011, v. 61, n. 4, p. 793, doi. 10.1007/s00248-011-9808-9

By:

Bruneel, Odile;
Volant, Aurélie;
Gallien, Sébastien;
Chaumande, Bertrand;
Casiot, Corinne;
Carapito, Christine;
Bardil, Amélie;
Morin, Guillaume;
Brown, Gordon;
Personné, Christian;
Le Paslier, Denis;
Schaeffer, Christine;
Van Dorsselaer, Alain;
Bertin, Philippe;
Elbaz-Poulichet, Françoise;
Arsène-Ploetze, Florence

Publication type:

Article

The Diverse Bacterial Community in Intertidal, Anaerobic Sediments at Sapelo Island, Georgia.

Published in:

Microbial Ecology, 2009, v. 58, n. 2, p. 244, doi. 10.1007/s00248-008-9481-9

By:

Lasher, Chris;
Dyszynski, Glen;
Everett, Karin;
Edmonds, Jennifer;
Wenying Ye;
Sheldon, Wade;
Shiyao Wang;
Joye, Samantha B.;
Moran, Mary Ann;
Whitman, William B.

Publication type:

Article

Microbial Diversity of the Freshwater Sponge Spongilla lacustris.

Published in:

Microbial Ecology, 2005, v. 50, n. 2, p. 206, doi. 10.1007/s00248-004-0172-x

By:

Gernert, Christine;
Glöckner, Frank Oliver;
Krohne, Georg;
Hentschel, Ute

Publication type:

Article

Genetic Diversity in Microcystis Populations of a French Storage Reservoir Assessed by Sequencing of the 16S-23S rRNA Intergenic Spacer.

Published in:

Microbial Ecology, 2005, v. 49, n. 2, p. 308, doi. 10.1007/s00248-004-0004-z

By:

Humbert, J. F.;
Duris-Latour, D.;
Le Berre, B.;
Giraudet, H.;
Salençon, M. J.

Publication type:

Article

Microsatellite markers for Opisthorchis felineus to understand its genetic diversity and transmission patterns of opisthorchiosis.

Published in:

Parasitology Research, 2023, v. 122, n. 12, p. 3109, doi. 10.1007/s00436-023-08001-3

By:

Katokhin, Aleksey V.;
Saltykova, Irina V.;
De Liberato, Claudio;
Schuster, Rolf;
Velavan, Thirumalaisamy P.

Publication type:

Article

Evolution of Complexity. Molecular Aspects of Preassembly.

Published in:

Molecules, 2021, v. 26, n. 21, p. 6618, doi. 10.3390/molecules26216618

By:

Menger, Fredric M.;
Rizvi, Syed A. A.

Publication type:

Article

Strategies for Natural Products Discovery from Uncultured Microorganisms.

Published in:

Molecules, 2021, v. 26, n. 10, p. 2977, doi. 10.3390/molecules26102977

By:

Alam, Khorshed;
Abbasi, Muhammad Nazeer;
Hao, Jinfang;
Zhang, Youming;
Li, Aiying;
Durán-Patrón, Rosa M.

Publication type:

Article

A High-Throughput Screening System Based on Droplet Microfluidics for Glucose Oxidase Gene Libraries.

Published in:

Molecules, 2020, v. 25, n. 10, p. 2418, doi. 10.3390/molecules25102418

By:

Prodanović, Radivoje;
Ung, W. Lloyd;
Ilić Đurđić, Karla;
Fischer, Rainer;
Weitz, David A.;
Ostafe, Raluca;
Vladisavljević, Goran T.;
Bolognesi, Guido

Publication type:

Article

Diversity-Oriented Synthetic Strategies Applied to Cancer Chemical Biology and Drug Discovery.

Published in:

Molecules, 2014, v. 19, n. 11, p. 17221, doi. 10.3390/molecules191117221

By:

Collins, Ian;
Jones, Alan M.

Publication type:

Article

Identification and expression analysis of infectious laryngotracheitis virus encoding microRNAs.

Published in:

Virus Genes, 2009, v. 39, n. 3, p. 301, doi. 10.1007/s11262-009-0397-3

By:

Rakesh Rachamadugu;
Jeong Lee;
Ann Wooming

Publication type:

Article

TRTools: a toolkit for genome-wide analysis of tandem repeats.

Published in:

Bioinformatics, 2021, v. 37, n. 5, p. 731, doi. 10.1093/bioinformatics/btaa736

By:

Mousavi, Nima;
Margoliash, Jonathan;
Pusarla, Neha;
Saini, Shubham;
Yanicky, Richard;
Gymrek, Melissa

Publication type:

Article

BYASE: a Python library for estimating gene and isoform level allele-specific expression.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4955, doi. 10.1093/bioinformatics/btaa636

By:

Dong, Lili;
Wang, Jianan;
Wang, Guohua

Publication type:

Article

KeggExp: a web server for visual integration of KEGG pathways and expression profile data.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1430, doi. 10.1093/bioinformatics/bty798

By:

Liu, Xian;
Han, Mingfei;
Zhao, Chen;
Chang, Cheng;
Zhu, Yunping;
Ge, Changhui;
Yin, Ronghua;
Zhan, Yiqun;
Li, Changyan;
Yu, Miao;
He, Fuchu;
Yang, Xiaoming

Publication type:

Article

TRAL: tandem repeat annotation library.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3051, doi. 10.1093/bioinformatics/btv306

By:

Schaper, Elke;
Korsunsky, Alexander;
Pečerska, Jūlija;
Messina, Antonio;
Murri, Riccardo;
Stockinger, Heinz;
Zoller, Stefan;
Xenarios, Ioannis;
Anisimova, Maria

Publication type:

Article

Cellular phenotype database: a repository for systems microscopy data.

Published in:

Bioinformatics, 2015, v. 31, n. 16, p. 2736, doi. 10.1093/bioinformatics/btv199

By:

Kirsanova, Catherine;
Brazma, Alvis;
Rustici, Gabriella;
Sarkans, Ugis

Publication type:

Article

GeLL: a generalized likelihood library for phylogenetic models.

Published in:

2015

By:

Money, Daniel;
Whelan, Simon

Publication type:

Product Review

Bioclojure: a functional library for the manipulation of biological sequences.

Published in:

2014

By:

Plieskatt, Jordan;
Rinaldi, Gabriel;
Brindley, Paul J.;
Jia, Xinying;
Potriquet, Jeremy;
Bethony, Jeffrey;
Mulvenna, Jason

Publication type:

Product Review

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments.

Published in:

2014

By:

Choi, Meena;
Chang, Ching-Yun;
Clough, Timothy;
Broudy, Daniel;
Killeen, Trevor;
MacLean, Brendan;
Vitek, Olga

Publication type:

Product Review

FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data.

Published in:

2014

By:

Wang, Weixin;
Wang, Panwen;
Xu, Feng;
Luo, Ruibang;
Wong, Maria Pik;
Lam, Tak-Wah;
Wang, Junwen

Publication type:

Product Review

PconsFold: improved contact predictions improve protein models.

Published in:

2014

By:

Michel, Mirco;
Hayat, Sikander;
Skwark, Marcin J.;
Sander, Chris;
Marks, Debora S.;
Elofsson, Arne

Publication type:

Product Review

GenCLiP 2.0: a web server for functional clustering of genes and construction of molecular networks based on free terms.

Published in:

2014

By:

Wang, Jia-Hong;
Zhao, Ling-Feng;
Lin, Pei;
Su, Xiao-Rong;
Chen, Shi-Jun;
Huang, Li-Qiang;
Wang, Hua-Feng;
Zhang, Hai;
Hu, Zhen-Fu;
Yao, Kai-Tai;
Huang, Zhong-Xi

Publication type:

Product Review

Lambda: the local aligner for massive biological data.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i349, doi. 10.1093/bioinformatics/btu439

By:

Hauswedell, Hannes;
Singer, Jochen;
Reinert, Knut

Publication type:

Article

FastHap: fast and accurate single individual haplotype reconstruction using fuzzy conflict graphs.

Published in:

2014

By:

Mazrouee, Sepideh;
Wang, Wei

Publication type:

Product Review

RidgeRace: ridge regression for continuous ancestral character estimation on phylogenetic trees.

Published in:

2014

By:

Kratsch, Christina;
McHardy, Alice C.

Publication type:

Product Review

RNASeqGUI: a GUI for analysing RNA-Seq data.

Published in:

2014

By:

Russo, Francesco;
Angelini, Claudia

Publication type:

Product Review

ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples.

Published in:

2014

By:

Tian, Rui;
Basu, Malay K.;
Capriotti, Emidio

Publication type:

Product Review

HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks.

Published in:

2014

By:

Hashemifar, Somaye;
Xu, Jinbo

Publication type:

Product Review

TEMPI: probabilistic modeling time-evolving differential PPI networks with multiPle information.

Published in:

2014

By:

Kim, Yongsoo;
Jang, Jin-Hyeok;
Choi, Seungjin;
Hwang, Daehee

Publication type:

Product Review

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data.

Published in:

2014

By:

Rosenberger, George;
Ludwig, Christina;
Röst, Hannes L.;
Aebersold, Ruedi;
Malmström, Lars

Publication type:

Product Review

SAMBLASTER: fast duplicate marking and structural variant read extraction.

Published in:

2014

By:

Faust, Gregory G.;
Hall, Ira M.

Publication type:

Product Review

unifiedWMWqPCR: the unified Wilcoxon–Mann–Whitney test for analyzing RT-qPCR data in R.

Published in:

2014

By:

De Neve, Jan;
Meys, Joris;
Ottoy, Jean–Pierre;
Clement, Lieven;
Thas, Olivier

Publication type:

Product Review

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci.

Published in:

2014

By:

Alkhnbashi, Omer S.;
Costa, Fabrizio;
Shah, Shiraz A.;
Garrett, Roger A.;
Saunders, Sita J.;
Backofen, Rolf

Publication type:

Product Review

MethylSig: a whole genome DNA methylation analysis pipeline.

Published in:

2014

By:

Park, Yongseok;
Figueroa, Maria E.;
Rozek, Laura S.;
Sartor, Maureen A.

Publication type:

Product Review

Fiona: a parallel and automatic strategy for read error correction.

Published in:

2014

By:

Schulz, Marcel H.;
Weese, David;
Holtgrewe, Manuel;
Dimitrova, Viktoria;
Niu, Sijia;
Reinert, Knut;
Richard, Hugues

Publication type:

Product Review

PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.

Published in:

2014

By:

Lancaster, Alex K.;
Nutter-Upham, Andrew;
Lindquist, Susan;
King, Oliver D.

Publication type:

Product Review