Works matching Introns

Results: 5000

Classification of exon and intron regions on DNA sequences with hybrid use of SBERT and ANFIS approaches.

Published in:

Journal of Polytechnic, 2024, v. 27, n. 3, p. 1043, doi. 10.2339/politeknik.1187808

By:

AKALIN, Fatma;
YUMUŞAK, Nejat

Publication type:

Article

Origin and evolution of a new retained intron on the vulcan gene in Drosophila melanogaster subgroup species.

Published in:

Genome, 2014, v. 57, n. 10, p. 567, doi. 10.1139/gen-2014-0132

By:

Zhan, Leilei;
Meng, Qiaohong;
Chen, Ran;
Yue, Yuan;
Jin, Yongfeng;
Bell, J.B.

Publication type:

Article

Is RNA editing implicated in group II intron survival in the angiosperm mitochondrial genome?

Published in:

Genome, 2012, v. 55, n. 1, p. 75, doi. 10.1139/G11-080

By:

Hiroyo Kagami;
Hironori Nagano;
Yoshiya Takahashi;
Tetsuo Mikami;
Tomohiko Kubo

Publication type:

Article

Development and utilization of novel intron length polymorphic markers in foxtail millet ( Setaria italica (L.) P. Beauv.).

Published in:

Genome, 2011, v. 54, n. 7, p. 586, doi. 10.1139/g11-020

By:

Gupta, Sarika;
Kumari, Kajal;
Das, Jyotirmoy;
Lata, Charu;
Puranik, Swati;
Prasad, Manoj;
Donini, Paolo

Publication type:

Article

Sequence diversity analysis of dihydroflavonol 4-reductase intron 1 in common bean.

Published in:

Genome, 2004, v. 47, n. 2, p. 266, doi. 10.1139/G03-103

By:

McClean, Phillip E.;
Lee, Rian K.;
Miklas, Phillip N.

Publication type:

Article

Phylogenetic and Exon-Intron Structure Analysis of Fungal Subtilisins: Support for a Mixed Model of Intron Evolution.

Published in:

Journal of Molecular Evolution, 2005, v. 60, n. 2, p. 238, doi. 10.1007/s00239-004-0147-z

By:

Wang, Chengshu;
Typas, Milton A.;
Butt, Tariq M.

Publication type:

Article

Convergent Evolution of Fern-Specific Mitochondrial Group II Intron atp1i361g2 and Its Ancient Source Paralogue rps3i249g2 and Independent Losses of Intron and RNA Editing among Pteridaceae.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 8, p. 2505, doi. 10.1093/gbe/evw173

By:

Zumkeller, Simon Maria;
Knoop, Volker;
Knie, Nils

Publication type:

Article

The Complex Intron Landscape and Massive Intron Invasion in a Picoeukaryote Provides Insights into Intron Evolution.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 12, p. 2393, doi. 10.1093/gbe/evt189

By:

Verhelst, Bram;
Van de Peer, Yves;
Rouzé, Pierre

Publication type:

Article

Analysis of Fungal Genomes Reveals Commonalities of Intron Gain or Loss and Functions in Intron-Poor Species.

Published in:

Molecular Biology & Evolution, 2021, v. 38, n. 10, p. 4166, doi. 10.1093/molbev/msab094

By:

Lim, Chun Shen;
Weinstein, Brooke N;
Roy, Scott W;
Brown, Chris M

Publication type:

Article

The intron landscape of the mtDNA cytb gene among the Ascomycota: introns and intron-encoded open reading frames.

Published in:

Mitochondrial DNA. Part A, 2018, v. 29, n. 7, p. 1015, doi. 10.1080/24701394.2017.1404042

By:

Guha, Tuhin K.;
Wai, Alvan;
Mullineux, Sahra-Taylor;
Hausner, Georg

Publication type:

Article

50/50 Expressional Odds of Retention Signifies the Distinction between Retained Introns and Constitutively Spliced Introns in Arabidopsis thaliana.

Published in:

Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01728

By:

Rui Mao;
Chun Liang;
Yang Zhang;
Xingan Hao;
Jinyan Li

Publication type:

Article

Hypervariable plastid locus variation and intron evolution in the Anacamptis palustris lineage.

Published in:

Genome, 2004, v. 47, n. 6, p. 999, doi. 10.1139/G04-063

By:

Cozzolino, Salvatore;
Cafasso, Donata;
Pellegrino, Giuseppe;
Musacchio, Aldo;
Widmer, Alex;
Donini, P.

Publication type:

Article

Tight binding of the 5' exon to domain I of a group II self-splicing intron requires completion of the intron active site.

Published in:

EMBO Journal, 1999, v. 18, n. 4, p. 1025, doi. 10.1093/emboj/18.4.1025

By:

Costa, Maria;
Michel, François

Publication type:

Article

Molecular Genetic Analysis of Cereal β-Amylase Genes Using Exon-Primed Intron-Crossing (EPIC) PCR.

Published in:

Field & Vegetable Crops Research / Ratarstvo i povrtarstvo, 2014, v. 51, n. 3, p. 175, doi. 10.5937/ratpov51-6808

By:

Stratula, Olga;
Cockram, James;
Kalendar, Ruslan

Publication type:

Article

Evolutionary analysis of Pinus leiophylla: a study using an Intron II sequence fragment of mitochondrial nad1.

Published in:

Canadian Journal of Botany, 2006, v. 84, n. 1, p. 172, doi. 10.1139/B05-138

By:

Vargas Mendoza, Carlos Fabián;
Rodríguez-Banderas, Abril

Publication type:

Article

Phylogenetic relationships among native Oxytropis species in Turkey using the trnL intron, trnL-F IGS, and trnV intron cpDNA regions.

Published in:

Turkish Journal of Botany, 2016, v. 40, n. 5, p. 472, doi. 10.3906/bot-1506-45

By:

TEKPINAR, Ayten;
ERKUL, Seher KARAMAN;
AYTAÇ, Zeki;
KAYA, Zeki

Publication type:

Article

Intron exclusion and the mystery of intron loss

Published in:

FEBS Letters, 2006, v. 580, n. 27, p. 6361, doi. 10.1016/j.febslet.2006.10.048

By:

Hu, Kejin

Publication type:

Article

An archaeal homing endonuclease I-PogI cleaves at the insertion site of the neighboring intron, which has no nested open reading frame<sup>1</sup><FN ID="FN1"><NO>1</NO>The nucleotide sequences of the two introns, Pog.S1205 and Pog.S1213, have been deposited to the GenBank/EMBL/DDBJ databases under the accession number AB087402.</FN>

Published in:

FEBS Letters, 2003, v. 544, n. 1-3, p. 165, doi. 10.1016/S0014-5793(03)00497-6

By:

Nakayama, Hitoshi;
Morinaga, Yayoi;
Nomura, Norimichi;
Nunoura, Takuro;
Sako, Yoshihiko;
Uchida, Aritsune

Publication type:

Article

Application of intron 9 and intron 25 dinucleotide repeats of the factor VIII gene for carrier diagnosis in haemophilia A.

Published in:

Haemophilia, 2008, v. 14, n. 3, p. 489, doi. 10.1111/j.1365-2516.2008.01698.x

By:

Venceslá, A.;
Baena, M.;
Fares Taie, L.;
Cornet, M.;
Baiget, M.;
Tizzano, E. F.

Publication type:

Article

Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07711-1

By:

Back, Georg;
Walther, Dirk

Publication type:

Article

CHARACTERIZATION OF THE SPLICE SITES IN GT–AG AND GC–AG INTRONS IN HIGHER EUKARYOTES USING FULL-LENGTH cDNAs.

Published in:

Journal of Bioinformatics & Computational Biology, 2004, v. 2, n. 2, p. 309, doi. 10.1142/S0219720004000570

By:

Kitamura-Abe, Sumie;
Itoh, Hitomi;
Washio, Takanori;
Tsutsumi, Akihiro;
Tomita, Masaru

Publication type:

Article

Elevated expression of human alpha-1 antitrypsin mediated by yeast intron in Pichia pastoris.

Published in:

Biotechnology Letters, 2006, v. 28, n. 19, p. 1545, doi. 10.1007/s10529-006-9121-8

By:

Hasannia, S.;
Lotfi, A.;
Mahboudi, F.;
Rezaii, A.;
Rahbarizadeh, F.;
Mohsenifar, A.

Publication type:

Article

Heterogeneity of intron presence or absence in rDNA genes of the lichen species Physcia aipolia and P. stellaris.

Published in:

Current Genetics, 2005, v. 47, n. 6, p. 389, doi. 10.1007/s00294-005-0581-5

By:

Simon, Dawn M.;
Hummel, Cora L.;
Sheeley, Sara L.;
Bhattacharya, Debashish

Publication type:

Article

A Phylogenetic Approach to Structural Variation in Organization of Nuclear Group I Introns and Their Ribozymes.

Published in:

Non-Coding RNA, 2021, v. 7, n. 3, p. 1, doi. 10.3390/ncrna7030043

By:

Furulund, Betty M. N.;
Karlsen, Bård O.;
Babiak, Igor;
Johansen, Steinar D.

Publication type:

Article

First Come, First Served: Sui Generis Features of the First Intron.

Published in:

Plants (2223-7747), 2020, v. 9, n. 7, p. 911, doi. 10.3390/plants9070911

By:

Zalabák, David;
Ikeda, Yoshihisa

Publication type:

Article

Distinct Expansion of Group II Introns During Evolution of Prokaryotes and Possible Factors Involved in Its Regulation.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.849080

By:

Miura, Masahiro C.;
Nagata, Shohei;
Tamaki, Satoshi;
Tomita, Masaru;
Kanai, Akio

Publication type:

Article

DMD transcripts in CRL-2061 rhabdomyosarcoma cells show high levels of intron retention by intron-specific PCR amplification.

Published in:

Cancer Cell International, 2017, v. 17, p. 1, doi. 10.1186/s12935-017-0428-4

By:

Emma Tabe Eko Niba;
Ryo Yamanaka;
Rani, Abdul Qawee Mahyoob;
Hiroyuki Awano;
Masaaki Matsumoto;
Hisahide Nishio;
Masafumi Matsuo

Publication type:

Article

Bacterial group II introns generate genetic diversity by circularization and trans-splicing from a population of intron-invaded mRNAs.

Published in:

PLoS Genetics, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pgen.1007792

By:

LaRoche-Johnston, Félix;
Monat, Caroline;
Coulombe, Samy;
Cousineau, Benoit

Publication type:

Article

Temperature-Dependent Self-Splicing Group I Introns in the Flagellin Genes of the Thermophilic Bacillus Species.

Published in:

Bioscience, Biotechnology & Biochemistry, 2012, v. 76, n. 2, p. 410, doi. 10.1271/bbb.110741

By:

Hayakawa, Jumpei;
Ishizuka, Morio

Publication type:

Article

De Novo Creation of Two Novel Spliceosomal Introns of RECG1 by Intronization of Formerly Exonic Sequences in Orchidaceae.

Published in:

Journal of Molecular Evolution, 2025, v. 93, n. 2, p. 267, doi. 10.1007/s00239-025-10242-y

By:

Xie, Yuan-Yuan;
Wen, Bin;
Bai, Ming-Zhu;
Guo, Yan-Yan

Publication type:

Article

Evolutionary Dynamics of the mS952 Intron: A Novel Mitochondrial Group II Intron Encoding a LAGLIDADG Homing Endonuclease Gene.

Published in:

Journal of Molecular Evolution, 2011, v. 72, n. 5/6, p. 433, doi. 10.1007/s00239-011-9442-7

By:

Mullineux, Sahra-Taylor;
Willows, Karla;
Hausner, Georg

Publication type:

Article

Evaluation of Models of the Mechanisms Underlying Intron Loss and Gain in Aspergillus Fungi.

Published in:

Journal of Molecular Evolution, 2010, v. 71, n. 5/6, p. 364, doi. 10.1007/s00239-010-9391-6

By:

Zhang, Lei-Ying;
Yang, Yu-Fei;
Niu, Deng-Ke

Publication type:

Article

An Overview of the Introns-First Theory.

Published in:

Journal of Molecular Evolution, 2009, v. 69, n. 5, p. 527, doi. 10.1007/s00239-009-9279-5

By:

Penny, David;
Hoeppner, Marc P.;
Poole, Anthony M.;
Jeffares, Daniel C.

Publication type:

Article

Evolution of Pleopsidium (Lichenized Ascomycota) S943 Group I Introns and the Phylogeography of an Intron-Encoded Putative Homing Endonuclease.

Published in:

Journal of Molecular Evolution, 2007, v. 64, n. 3, p. 285, doi. 10.1007/s00239-005-0179-z

By:

Reeb, Valérie;
Haugen, Peik;
Bhattacharya, Debashish;
Lutzoni, François

Publication type:

Article

Vertical Evolution and Intragenic Spread of Lichen-Fungal Group I Introns.

Published in:

Journal of Molecular Evolution, 2002, v. 55, n. 1, p. 74, doi. 10.1007/s00239-001-2305-x

By:

Bhattacharya, Debashish;
Friedl, Thomas;
Helms, Gert

Publication type:

Article

Group I Introns from Zygomycota: Evolutionary Implications for the Fungal IC1 Intron Subgroup.

Published in:

Journal of Molecular Evolution, 2002, v. 54, n. 5, p. 692, doi. 10.1007/s00239-001-0071-4

By:

Tanabe, Yuuhiko;
Yokota, Akira;
Sugiyama, Junta

Publication type:

Article

Dynamic Insertion–Deletion of Introns in Deuterostome EF-1α Genes.

Published in:

Journal of Molecular Evolution, 2002, v. 54, n. 1, p. 118, doi. 10.1007/s00239-001-0024-y

By:

Wada, Hiroshi;
Kobayashi, Mari;
Sato, Riki;
Satoh, Nori;
Miyasaka, Hitoshi;
Shirayama, Yoshihisa

Publication type:

Article

Intron Dynamics and the Evolution of Integrin β-Subunit Genes: Maintenance of an Ancestral Gene Structure in the Coral, Acropora millepora.

Published in:

Journal of Molecular Evolution, 2001, v. 53, n. 6, p. 703, doi. 10.1007/s002390010257

By:

Schmitt, Dasan M.;
Brower, Danny L.

Publication type:

Article

Regular Spliceosomal Introns Are Invasive in Chlamydomonas reinhardtii: 15 Introns in the Recently Relocated Mitochondrial cox2 and cox3 Genes.

Published in:

Journal of Molecular Evolution, 2001, v. 53, n. 4/5, p. 333, doi. 10.1007/s002390010223

By:

Watanabe, Kazuo I.;
Ohama, Takeshi

Publication type:

Article

Common introns within orthologous genes: software and application to plants.

Published in:

Briefings in Bioinformatics, 2009, v. 10, n. 6, p. 631, doi. 10.1093/bib/bbp051

By:

D.Wilkerson, Matthew;
Ru, Yuanbin;
Brendel, Volker P.

Publication type:

Article

Analysis of evolution of exon-intron structure of eukaryotic genes.

Published in:

Briefings in Bioinformatics, 2005, v. 6, n. 2, p. 118, doi. 10.1093/bib/6.2.118

By:

Rogozin, Igor B.;
Sverdlov, Alexander V.;
Babenko, Vladimir N.;
Koonin, Eugene V.

Publication type:

Article

Mobile group I introns at nuclear rDNA position L2066 harbor sense and antisense homing endonuclease genes intervened by spliceosomal introns.

Published in:

Mobile DNA, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13100-022-00280-4

By:

Lian, Kjersti;
Furulund, Betty M. N.;
Tveita, Anders A.;
Haugen, Peik;
Johansen, Steinar D.

Publication type:

Article

Bacterial group I introns: mobile RNA catalysts.

Published in:

Mobile DNA, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-8753-5-8

By:

Hausner, Georg;
Hafez, Mohamed;
Edgell, David R.

Publication type:

Article

Nuclear group I introns in self-splicing and beyond.

Published in:

Mobile DNA, 2013, v. 4, n. 1, p. 1, doi. 10.1186/1759-8753-4-17

By:

Hedberg, Annica;
Johansen, Steinar D.

Publication type:

Article

Microsporidian Introns Retained against a Background of Genome Reduction: Characterization of an Unusual Set of Introns.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 1, p. 263, doi. 10.1093/gbe/evy260

By:

Whelan, Thomas A;
Lee, Nicole T;
Lee, Renny C H;
Fast, Naomi M

Publication type:

Article

Intron Gains and Losses in the Evolution of Fusarium and Cryptococcus Fungi.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 11, p. 1148, doi. 10.1093/gbe/evs091

By:

Croll, Daniel;
McDonald, Bruce A.

Publication type:

Article

Intron Gains and Losses in the Evolution of Fusarium and Cryptococcus Fungi.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 1148, doi. 10.1093/gbe/evs091

By:

Croll, Daniel;
McDonald, Bruce A.

Publication type:

Article

Evolution of group I introns in Porifera: new evidence for intron mobility and implications for DNA barcoding.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0928-9

By:

Schuster, Astrid;
Lopez, Jose V.;
Becking, Leontine E.;
Kelly, Michelle;
Pomponi, Shirley A.;
Wörheide, Gert;
Erpenbeck, Dirk;
Cárdenas, Paco

Publication type:

Article

Recent horizontal transfer, functional adaptation and dissemination of a bacterial group II intron.

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0789-7

By:

LaRoche-Johnston, Félix;
Monat, Caroline;
Cousineau, Benoit

Publication type:

Article

Intermediate introns in nuclear genes of euglenids – are they a distinct type?

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0620-5

By:

Milanowski, Rafał;
Gumińska, Natalia;
Karnkowska, Anna;
Takao Ishikawa;
Zakryś, Bożena

Publication type:

Article