Works matching DE "DNA-ligand interactions"

Results: 194

Structural basis for engagement by complement factor H of C3b on a self surface.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 4, p. 463, doi. 10.1038/nsmb.2018

By:

Morgan, Hugh P.;
Schmidt, Christoph Q.;
Guariento, Mara;
Blaum, Bärbel S.;
Gillespie, Dominic;
Herbert, Andrew P.;
Kavanagh, David;
Mertens, Haydyn D. T.;
Svergun, Dmitri I.;
Johansson, Conny M.;
Uhrín, Dušan;
Barlow, Paul N.;
Hannan, Jonathan P.

Publication type:

Article

Molecular recognition of histone H3 by the WD40 protein WDR5.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 8, p. 698, doi. 10.1038/nsmb1116

By:

Couture, Jean-François;
Collazo, Evys;
Trievel, Raymond C.

Publication type:

Article

Simulation of the Interaction between DNA and Oleic Acid.

Published in:

Doklady Biochemistry & Biophysics, 2001, v. 381, n. 1-6, p. 399, doi. 10.1023/A:1013363529737

By:

Struchkov, V. A.;
D'yachkov, E. P.;
Strazhevskaya, N. B.;
Zhdanov, R. I.;
D'yachkov, P. N.

Publication type:

Article

A spectroscopic investigation of the interaction between c-MYC DNA and tetrapyridinoporphyrazinatozinc(II).

Published in:

Journal of Biological Physics, 2014, v. 40, n. 3, p. 275, doi. 10.1007/s10867-014-9348-x

By:

Hassani, Leila;
Fazeli, Zahra;
Safaei, Elham;
Rastegar, Hossein;
Akbari, Minoo

Publication type:

Article

Robust $$k$$ -mer frequency estimation using gapped $$k$$ -mers.

Published in:

Journal of Mathematical Biology, 2014, v. 69, n. 2, p. 469, doi. 10.1007/s00285-013-0705-3

By:

Ghandi, Mahmoud;
Mohammad-Noori, Morteza;
Beer, Michael

Publication type:

Article

CEAS: cis-regulatory element annotation system.

Published in:

Bioinformatics, 2009, v. 25, n. 19, p. 2605, doi. 10.1093/bioinformatics/btp479

By:

Hyunjin Shin;
Tao Liu;
Manrai, Arjun K.;
X. Shirley Liu

Publication type:

Article

Unorthodox Transcriptional Mechanisms of Lipid-Sensing Nuclear Receptors in Macrophages: Are We Opening a New Chapter?

Published in:

Frontiers in Endocrinology, 2020, v. 11, p. N.PAG, doi. 10.3389/fendo.2020.609099

By:

Czimmerer, Zsolt;
Halasz, Laszlo;
Nagy, Laszlo

Publication type:

Article

Experimental strategies for studying transcription factor–DNA binding specificities.

Published in:

Briefings in Functional Genomics, 2010, v. 9, n. 5/6, p. 362, doi. 10.1093/bfgp/elq023

By:

Geertz, Marcel;
Maerk, Sebastian J.

Publication type:

Article

Drug-drug interactions as a determinant of elevated lithium serum levels in daily clinical practice.

Published in:

Bipolar Disorders, 2005, v. 7, n. 3, p. 274, doi. 10.1111/j.1399-5618.2005.00199.x

By:

Wilting, Ingeborg;
Movig, Kristian LL;
Moolenaar, Marieke;
Hekster, Yechiel A;
Brouwers, Jacobus RBJ;
Heerdink, Eibert R;
Nolen, Willem A;
Egberts, Antoine CG

Publication type:

Article

PDA: an automatic and comprehensive analysis program for protein-DNA complex structures.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S1-S13

By:

RyangGuk Kim;
Jun-tao Guo

Publication type:

Article

Synchronized Chiral Induction between [5]Helicene-Spermine Ligand and B- Z DNA Transition.

Published in:

Chemistry - A European Journal, 2017, v. 23, n. 8, p. 1763, doi. 10.1002/chem.201605276

By:

Kawara, Kensuke;
Tsuji, Genichiro;
Taniguchi, Yosuke;
Sasaki, Shigeki

Publication type:

Article

Photoinduced [2+2] and [4+4] Cycloaddition and Cycloreversion Reactions for the Development of Photocontrollable DNA Binders.

Published in:

ChemPhotoChem, 2024, v. 8, n. 7, p. 1, doi. 10.1002/cptc.202300318

By:

Dohmen, Christoph;
Ihmels, Heiko

Publication type:

Article

Interactions of Some Divalent Metal Ions with Thymine and Uracil Thiosemicarbazide Derivatives.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2016, v. 35, n. 5, p. 259, doi. 10.1080/15257770.2016.1143558

By:

Hammud, Hassan H.;
El-Dakdouki, Mohammad H.;
Sonji, Nada;
Sonji, Ghassan;
Bouhadir, Kamal H.

Publication type:

Article

Synthesis, DNA Binding, and Cleavage Studies of Co(III) Complexes with Fused Aromatic NO/NN-Containing Ligands.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2012, v. 31, n. 2, p. 130, doi. 10.1080/15257770.2011.644369

By:

Sudhamani, ChittanahalliN.;
Naik, HalehattyS. Bhojya;
Girija, D.

Publication type:

Article

CU(II) and MN(II) Complexes Containing Macroacyclic Ligand: Synthesis, DNA Binding, and Cleavage Studies.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2012, v. 31, n. 1, p. 1, doi. 10.1080/15257770.2011.636415

By:

Sreekanth, B.;
Krishnamurthy, G.;
Naik, H.S. Bhojya;
Vishnuvardhan, T.K.

Publication type:

Article

Synthesis, Characterization and Antimicrobial Activity of some Metal Complexes Derived from Thiazole Schiff Bases with In-vitro Cytotoxicity and DNA Cleavage Studies.

Published in:

Indian Journal of Pharmaceutical Education & Research, 2017, v. 51, n. 3, p. 490, doi. 10.5530/ijper.51.3.77

By:

Karabasannavar, Shambuling;
Allolli, Parvati;
Shaikh, Irfan N.;
Kalshetty, Basavaraj M.

Publication type:

Article

Investigation of DNA/BSA binding of three Ru(II) complexes by various spectroscopic methods, molecular docking and their antimicrobial activity.

Published in:

Journal of Coordination Chemistry, 2017, v. 70, n. 21, p. 3790, doi. 10.1080/00958972.2017.1407410

By:

Ravi Kumar, Vuradi;
Nagababu, Penumaka;
Srinivas, G.;
Rajender Reddy, Mallepally;
Vinoda Rani, M.;
Ravi, Mudavath;
Satyanarayana, S.

Publication type:

Article

Alkyl chain length effect on construction of copper(II) complexes with tridentate Schiff base ligand and DNA interaction.

Published in:

Journal of Coordination Chemistry, 2016, v. 69, n. 8, p. 1313, doi. 10.1080/00958972.2016.1163547

By:

Vafazadeh, Rasoul;
Jafari, Fariba;
Heidari, Mohammad Mehdi;
Willis, Anthony C.

Publication type:

Article

Synthesis, crystal structures, antioxidant activities, and DNA-binding studies of two silver(I) complexes with 1,3-bis(1-ethylbenzimidazol-2-yl)-2-thiapropane, and α,β -unsaturated carboxylates.

Published in:

Journal of Coordination Chemistry, 2016, v. 69, n. 6, p. 1076, doi. 10.1080/00958972.2016.1145212

By:

Wu, Huilu;
Yang, Zaihui;
Chen, Chengyong;
Zhang, Jiawen;
Zhang, Han;
Peng, Hongping;
Wang, Fei

Publication type:

Article

Ag(I) and Zn(II) isonicotinate complexes: design, characterization, antimicrobial effect, and CT-DNA binding studies.

Published in:

Journal of Coordination Chemistry, 2015, v. 68, n. 24, p. 4423, doi. 10.1080/00958972.2015.1101074

By:

Almáši, M.;
Vargová, Z.;
Sabolová, D.;
Kudláčová, J.;
Hudecová, D.;
Kuchár, J.;
Očenášová, L.;
Györyová, K.

Publication type:

Article

Cadmium(II) complexes of 5-nitro-salicylaldehyde and α -diimines: synthesis, structure and interaction with calf-thymus DNA.

Published in:

Journal of Coordination Chemistry, 2015, v. 68, n. 24, p. 4444, doi. 10.1080/00958972.2015.1101075

By:

Zianna, Ariadni;
Sumar Ristovic, Maja;
Psomas, George;
Hatzidimitriou, Antonis;
Coutouli-Argyropoulou, Evdoxia;
Lalia-Kantouri, Maria

Publication type:

Article

Copper(II) and nickel(II) complexes derived from a carbothioamide-5-pyrazolone ligand: synthesis, characterization, crystal structures, electrochemical, potentiometric and DNA-binding studies.

Published in:

Journal of Coordination Chemistry, 2015, v. 68, n. 24, p. 4373, doi. 10.1080/00958972.2015.1096932

By:

Akcha, Selma;
Hammal, Lamouri;
Triki, Smail;
Lezama, Luis;
Nedjar-Kolli, Bellara;
Benali Baitich, Ouassini

Publication type:

Article

The role of carboxymethyl substituents in the interaction of tetracationic porphyrins with DNA.

Published in:

European Biophysics Journal, 2012, v. 41, n. 9, p. 723, doi. 10.1007/s00249-012-0848-y

By:

Kovaleva, Oxana;
Tsvetkov, Vladimir;
Shchyolkina, Anna;
Borisova, Olga;
Ol'shevskaya, Valentina;
Makarenkov, Anton;
Semeikin, Alexander;
Shtil, Alexander;
Kaluzhny, Dmitry

Publication type:

Article

Centromere-specific histone Cse4 by the chaperone Scm3.

Published in:

2013

By:

Cho, Uhn-Soo;
Harrison, Stephen C.

Publication type:

Conference Paper/Materials

Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes.

Published in:

2013

By:

Caravaca, Juan Manuel;
Donahue, Greg;
Becker, Justin S.;
Zaret, Kenneth S.

Publication type:

Conference Paper/Materials

Search for β<sub>2</sub> Adrenergic Receptor Ligands by Virtual Screening via Grid Computing and Investigation of Binding Modes by Docking and Molecular Dynamics Simulations.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107837

By:

Bai, Qifeng;
Shao, Yonghua;
Pan, Dabo;
Zhang, Yang;
Liu, Huanxiang;
Yao, Xiaojun

Publication type:

Article

Solution-Phase vs Surface-Phase Aptamer-Protein Affinity from a Label-Free Kinetic Biosensor.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0075419

By:

Daniel, Camille;
Roupioz, Yoann;
Gasparutto, Didier;
Livache, Thierry;
Buhot, Arnaud

Publication type:

Article

Prospect of Bioflavonoid Fisetin as a Quadruplex DNA Ligand: A Biophysical Approach.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0065383

By:

Sengupta, Bidisha;
Pahari, Biswapathik;
Blackmon, Laura;
Sengupta, Pradeep K.

Publication type:

Article

CATCHprofiles: Clustering and Alignment Tool for ChIP Profiles.

Published in:

PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0028272

By:

Nielsen, Fiona G. G.;
Markus, Kasper Galschiøt;
Friborg, Rune Møllegaard;
Favrholdt, Lene Monrad;
Stunnenberg, Hendrik G.;
Huynen, Martijn

Publication type:

Article

Lithocholic Acid Is an Eph-ephrin Ligand Interfering with Eph-kinase Activation.

Published in:

PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0018128

By:

Giorgio, Carmine;
Mohamed, Iftiin Hassan;
Flammini, Lisa;
Barocelli, Elisabetta;
Incerti, Matteo;
Lodola, Alessio;
Tognolini, Massimiliano

Publication type:

Article

Mayday SeaSight: Combined Analysis of Deep Sequencing and Microarray Data.

Published in:

PLoS ONE, 2011, v. 6, n. 1, p. 1, doi. 10.1371/journal.pone.0016345

By:

Battke, Florian;
Nieselt, Kay

Publication type:

Article

Understanding the Sequence-Dependence of DNA Groove Dimensions: Implications for DNA Interactions.

Published in:

PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0015931

By:

Oguey, Christophe;
Foloppe, Nicolas;
Hartmann, Brigitte

Publication type:

Article

Insights on Glucocorticoid Receptor Activity Modulation through the Binding of Rigid Steroids.

Published in:

PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013279

By:

Presman, Diego M.;
Alvarez, Lautaro D.;
Levi, Valeria;
Eduardo, Silvina;
Digman, Michelle A.;
Martí, Marcelo A.;
Veleiro, Adriana S.;
Burton, Gerardo;
Pecci, Adali

Publication type:

Article

Conformational Determinants of Phosphotyrosine Peptides Complexed with the Src SH2 Domain.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011215

By:

Nachman, Joseph;
Gish, Gerry;
Virag, Cristina;
Pawson, Tony;
Pomès, Régis;
Pai, Emil

Publication type:

Article

Coronavirus Spike Protein Inhibits Host Cell Translation by Interaction with eIF3f.

Published in:

PLoS ONE, 2008, v. 3, n. 1, p. 1, doi. 10.1371/journal.pone.0001494

By:

Han Xiao;
Ling Hui Xu;
Yamada, Yoshiyuki;
Ding Xiang Liu

Publication type:

Article

Identification of elevated transcripts in a Trichoderma reesei strain expressing a chimeric transcription activator using suppression subtractive hybridization.

Published in:

World Journal of Microbiology & Biotechnology, 2009, v. 25, n. 6, p. 1075

By:

Zhiyang Dong

Publication type:

Article

Effect of different fluorescent dyes on thermal stability of DNA and cell viability of the hyperthermophilic archaeon Aeropyrum pernix.

Published in:

World Journal of Microbiology & Biotechnology, 2008, v. 24, n. 10, p. 2115, doi. 10.1007/s11274-008-9717-3

By:

Miha Črnigoj;
Rok Kostanjšek;
Gönül Kaletunç;
Nataša Poklar Ulrih

Publication type:

Article

Chimeric Mos1 and piggyBac transposases result in site-directed integration.

Published in:

FASEB Journal, 2006, v. 20, n. 11, p. 1880, doi. 10.1096/fj.05-5485fje

By:

Maragathavally, K. J.;
Kaminski, J. M.;
Coates, C. J.

Publication type:

Article

The human DNA polymerase λ interacts with PCNA through a domain important for DNA primer binding and the interaction is inhibited by p21<sup>WAF1/CIP1</sup>.

Published in:

FASEB Journal, 2004, v. 18, n. 14, p. 1743, doi. 10.1096/fj.04-2268fje

By:

Maga, Giovanni;
Blanca, Giuseppina;
Shevelev, Igor;
Frouin, Isabelle;
Ramadan, Kristijan;
Hüscher, Ulrich;
Spadari, Silvio;
Villiani, Giuseppe

Publication type:

Article

Behavior of Ethidium Bromide-Hoechst 33258-DNA and Ethidium Bromide-Methylene Blue-DNA Triple Systems by means of UV Melting.

Published in:

Spectroscopy: An International Journal, 2015, p. 1, doi. 10.1155/2015/586231

By:

Vardevanyan, Poghos O.;
Antonyan, Ara P.;
Parsadanyan, Marine A.;
Shahinyan, Mariam A.;
Melkonyan, Gayane A.

Publication type:

Article

Ultrasensitive detection of genomic DNA from apple leaf tissues, using surface-enhanced Raman scattering.

Published in:

Spectroscopy: An International Journal, 2011, v. 25, n. 1, p. 33, doi. 10.1155/2011/628417

By:

Muntean, Cristina M.;
Leopold, Nicolae;
Halmagyi, Adela;
Valimareanu, Sergiu

Publication type:

Article

Structural characterization and DNA-binding properties of Sm(III) complex with ofloxacin using spectroscopic methods.

Published in:

Spectroscopy: An International Journal, 2009, v. 23, n. 2, p. 103, doi. 10.1155/2009/769146

By:

Changyun Chen;
Kai Chen;
Qi Long;
Meihua Ma;
Fei Ding

Publication type:

Article

Discrimination of the binding mode of DNA ligands by single-photon timing.

Published in:

Spectroscopy: An International Journal, 2009, v. 23, n. 1, p. 11, doi. 10.1155/2009/605756

By:

Nardo, Luca;
Bondani, Maria;
Andreoni, Alessandra

Publication type:

Article

Learning to unwind.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 9, p. 734, doi. 10.1038/nsmb0905-734

By:

Chong, James P.J.

Publication type:

Article

Cellulose-bound Peptide Arrays: Preparation and Applications.

Published in:

Biotechnology & Genetic Engineering Reviews, 2007, v. 24, p. 31, doi. 10.1080/02648725.2007.10648093

By:

Hilpert, Kai;
Winkler, Dirk F. H.;
Hancock, Robert E. W.

Publication type:

Article

Study of functional interaction between three copies of the insulator from the MDG4 transposable element in the model system of the miniwhite gene of Drosophila melanogaster.

Published in:

Doklady Biochemistry & Biophysics, 2008, v. 421, n. 1, p. 239, doi. 10.1134/S1607672908040194

By:

Kostyuchenko, M. V.;
Savitskaya, E. E.;
Volkov, I. A.;
Golovnin, A. K.;
Georgiev, P. G.

Publication type:

Article

Affinity purification of plasmid DNA by temperature-triggered precipitation.

Published in:

Biotechnology & Bioengineering, 2004, v. 85, n. 3, p. 293, doi. 10.1002/bit.10890

By:

Jan Kostal;
Ashok Mulchandani;
Wilfred Chen

Publication type:

Article

DNABinding Study of NickelII and ZincII Complexes with Two Novel ChromenoneBased SchiffBase Ligands.

Published in:

Helvetica Chimica Acta, 2009, v. 92, n. 3, p. 525, doi. 10.1002/hlca.200800350

By:

DongDong Qin;
ZhengYin Yang;
TianRong Li;
GaoFei Qi

Publication type:

Article

DNA studies of newly synthesized heteroleptic platinum(II) complexes [Pt(bpy)(iip)] and [Pt(bpy)(miip)].

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2016, v. 21, n. 2, p. 163, doi. 10.1007/s00775-015-1317-8

By:

Coban, Burak;
Tekin, Ishak;
Sengul, Abdurrahman;
Yildiz, Ufuk;
Kocak, Izzet;
Sevinc, Nergis

Publication type:

Article

Structure-activity relationship study of copper(II) complexes with 2-oxo-1,2-dihydroquinoline-3-carbaldehyde (4′-methylbenzoyl) hydrazone: synthesis, structures, DNA and protein interaction studies, antioxidative and cytotoxic activity.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2012, v. 17, n. 2, p. 223, doi. 10.1007/s00775-011-0844-1

By:

Senthil Raja, Duraisamy;
Bhuvanesh, Nattamai;
Natarajan, Karuppannan

Publication type:

Article