Works matching AU Elf, Johan

Results: 44

Simulated single molecule microscopy with SMeagol.

Published in:

2016

By:

Lindén, Martin;
Ćurić, Vladimir;
Boucharin, Alexis;
Fange, David;
Elf, Johan

Publication type:

Product Review

MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3155, doi. 10.1093/bioinformatics/bts584

By:

Fange, David;
Mahmutovic, Anel;
Elf, Johan

Publication type:

Article

Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0198416

By:

Kipper, Kalle;
Eremina, Nadja;
Marklund, Emil;
Tubasum, Sumera;
Mao, Guanzhong;
Lehmann, Laura Christina;
Elf, Johan;
Deindl, Sebastian

Publication type:

Article

Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation.

Published in:

Nature Genetics, 2014, v. 46, n. 4, p. 405, doi. 10.1038/ng.2905

By:

Hammar, Petter;
Walldén, Mats;
Fange, David;
Persson, Fredrik;
Baltekin, Özden;
Ullman, Gustaf;
Leroy, Prune;
Elf, Johan

Publication type:

Article

Stochastic reaction-diffusion simulation with MesoRD.

Published in:

Bioinformatics, 2005, v. 21, n. 12, p. 2923

By:

Johan Elf

Publication type:

Article

Outpatient Treatment in Low-Risk Pulmonary Embolism Patients Receiving Direct Acting Oral Anticoagulants Is Associated With Cost Savings.

Published in:

Clinical & Applied Thrombosis/Hemostasis, 2020, v. 26, p. 1, doi. 10.1177/1076029620937352

By:

Ghazvinian, Raein;
Elf, Johan;
Löfvendahl, Sofia;
Holst, Jan;
Gottsäter, Anders

Publication type:

Article

Evaluation of Expression Level of Apolipoprotein M as a Diagnostic Marker for Primary Venous Thromboembolism.

Published in:

Clinical & Applied Thrombosis/Hemostasis, 2018, v. 24, n. 3, p. 416, doi. 10.1177/1076029617730639

By:

Ahmad, Abrar;
Sundquist, Kristina;
Zöller, Bengt;
Dahlbäck, Björn;
Elf, Johan;
Svensson, Peter J.;
Strandberg, Karin;
Sundquist, Jan;
Memon, Ashfaque A.

Publication type:

Article

Jugular Vein Thrombosis and Anticoagulation Therapy in Lemierre's Syndrome—A Post Hoc Observational and Population-Based Study of 82 Patients.

Published in:

Open Forum Infectious Diseases, 2021, v. 8, n. 1, p. 1, doi. 10.1093/ofid/ofaa585

By:

Nygren, David;
Elf, Johan;
Torisson, Gustav;
Holm, Karin

Publication type:

Article

Direct measurements of mRNA translation kinetics in living cells.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29515-x

By:

Metelev, Mikhail;
Lundin, Erik;
Volkov, Ivan L.;
Gynnå, Arvid H.;
Elf, Johan;
Johansson, Magnus

Publication type:

Article

The effects of baroreflex activation therapy on blood pressure and sympathetic function in patients with refractory hypertension: the rationale and design of the Nordic BAT study*.

Published in:

Blood Pressure, 2017, v. 26, n. 5, p. 294, doi. 10.1080/08037051.2017.1332477

By:

Gordin, Daniel;
Fadl Elmula, Fadl Elmula M.;
Andersson, Bert;
Gottsäter, Anders;
Elf, Johan;
Kahan, Thomas;
Christensen, Kent Lodberg;
Vikatmaa, Pirkka;
Vikatmaa, Leena;
Bastholm Olesen, Thomas;
Groop, Per-Henrik;
Olsen, Michael Hecht;
Tikkanen, Ilkka

Publication type:

Article

Contact‐dependent growth inhibition induces high levels of antibiotic‐tolerant persister cells in clonal bacterial populations.

Published in:

EMBO Journal, 2018, v. 37, n. 9, p. 1, doi. 10.15252/embj.201798026

By:

Ghosh, Anirban;
Baltekin, Özden;
Wäneskog, Marcus;
Elkhalifa, Dina;
Hammarlöf, Disa L.;
Elf, Johan;
Koskiniemi, Sanna

Publication type:

Article

Real-time single-molecule 3D tracking in E. coli based on cross-entropy minimization.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36879-1

By:

Amselem, Elias;
Broadwater, Bo;
Hävermark, Tora;
Johansson, Magnus;
Elf, Johan

Publication type:

Article

Rapid antibiotic susceptibility testing and species identification for mixed samples.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33659-1

By:

Kandavalli, Vinodh;
Karempudi, Praneeth;
Larsson, Jimmy;
Elf, Johan

Publication type:

Article

In situ genotyping of a pooled strain library after characterizing complex phenotypes.

Published in:

Molecular Systems Biology, 2017, v. 13, n. 10, p. 1, doi. 10.15252/msb.20177951

By:

Lawson, Michael J;
Camsund, Daniel;
Larsson, Jimmy;
Baltekin, Özden;
Fange, David;
Elf, Johan

Publication type:

Article

What Makes Ribosome-Mediated Transcriptional Attenuation Sensitive to Amino Acid Limitation?

Published in:

PLoS Computational Biology, 2005, v. 1, n. 1, p. 14, doi. 10.1371/journal.pcbi.0010002

By:

Elf, Johan;
Ehrenberg, Måns;
Mattick, John Stanley

Publication type:

Article

Three-dimensional localization and tracking of chromosomal loci throughout the Escherichia coli cell cycle.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07155-9

By:

Karempudi, Praneeth;
Gras, Konrad;
Amselem, Elias;
Zikrin, Spartak;
Schirman, Dvir;
Elf, Johan

Publication type:

Article

Evaluation of direct oral anticoagulants and vitamin K antagonists in mesenteric venous thrombosis.

Published in:

Global Health Promotion, 2019, v. 34, n. 3, p. 171, doi. 10.1177/0268355518779517

By:

Salim, Saman;
Ekberg, Olle;
Elf, Johan;
Zarrouk, Moncef;
Gottsäter, Anders;
Acosta, Stefan

Publication type:

Article

Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 11, p. 1, doi. 10.1371/journal.pcbi.1011181

By:

Hallström, Erik;
Kandavalli, Vinodh;
Ranefall, Petter;
Elf, Johan;
Wählby, Carolina

Publication type:

Article

Evaluation of direct oral anticoagulants and vitamin K antagonists in mesenteric venous thrombosis.

Published in:

Phlebology, 2019, v. 34, n. 3, p. 171, doi. 10.1177/0268355518779517

By:

Salim, Saman;
Elf, Johan;
Zarrouk, Moncef;
Gottsäter, Anders;
Acosta, Stefan;
Ekberg, Olle

Publication type:

Article

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product.

Published in:

EMBO Reports, 2012, v. 13, n. 9, p. 835, doi. 10.1038/embor.2012.106

By:

Shyp, Viktoriya;
Tankov, Stoyan;
Ermakov, Andrey;
Kudrin, Pavel;
English, Brian P;
Ehrenberg, Måns;
Tenson, Tanel;
Elf, Johan;
Hauryliuk, Vasili

Publication type:

Article

Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis.

Published in:

Molecular Microbiology, 2016, v. 99, n. 4, p. 767, doi. 10.1111/mmi.13264

By:

Paintdakhi, Ahmad;
Parry, Bradley;
Campos, Manuel;
Irnov, Irnov;
Elf, Johan;
Surovtsev, Ivan;
Jacobs‐Wagner, Christine

Publication type:

Article

Sex-Specific Risk Factors for Deep Venous Thrombosis and Pulmonary Embolism in a Population-Based Historical Cohort Study of Middle-Aged and Older Individuals.

Published in:

Journal of the American Heart Association, 2023, v. 12, n. 5, p. 1, doi. 10.1161/JAHA.122.027502

By:

Brink, Annie;
Elf, Johan;
Svensson, Peter J.;
Engström, Gunnar;
Melander, Olle;
Zöller, Bengt

Publication type:

Article

Classic Thrombophilias and Thrombotic Risk Among Middle-Aged and Older Adults: A Population-Based Cohort Study.

Published in:

2022

By:

Manderstedt, Eric;
Halldén, Christina Lind;
Halldén, Christer;
Elf, Johan;
Svensson, Peter J.;
Dahlbäck, Björn;
Engström, Gunnar;
Melander, Olle;
Baras, Aris;
Lotta, Luca A.;
Zöller, Bengt;
Lind-Halldén, Christina;
Regeneron Genetics Center 4 [Link]

Publication type:

journal article

Phenotypic drug susceptibility testing for Mycobacterium tuberculosis variant bovis BCG in 12 hours.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59736-9

By:

Tran, Buu Minh;
Larsson, Jimmy;
Grip, Anastasia;
Karempudi, Praneeth;
Elf, Johan

Publication type:

Article

Single molecule approaches to transcription factor kinetics in living cells

Published in:

FEBS Letters, 2009, v. 583, n. 24, p. 3979, doi. 10.1016/j.febslet.2009.11.035

By:

Li, Gene-Wei;
Elf, Johan

Publication type:

Article

Systems Biology: Nobel Symposium 146

Published in:

2009

By:

Ehrenberg, Måns;
Elf, Johan;
Hohmann, Stefan

Publication type:

Editorial

Identification of novel diagnostic biomarkers for deep venous thrombosis.

Published in:

British Journal of Haematology, 2018, v. 181, n. 3, p. 378, doi. 10.1111/bjh.15206

By:

Memon, Ashfaque A.;
Sundquist, Kristina;
PirouziFard, Mirnabi;
Elf, Johan L.;
Strandberg, Karin;
Svensson, Peter J.;
Sundquist, Jan;
Zöller, Bengt

Publication type:

Article

Effects of macromolecular crowding and DNA looping on gene regulation kinetics.

Published in:

Nature Physics, 2009, v. 5, n. 4, p. 294, doi. 10.1038/nphys1222

By:

Li, Gene-Wei;
Berg, Otto G.;
Elf, Johan

Publication type:

Article

Extracting intracellular diffusive states and transition rates from single-molecule tracking data.

Published in:

Nature Methods, 2013, v. 10, n. 3, p. 265, doi. 10.1038/nmeth.2367

By:

Persson, Fredrik;
Lindén, Martin;
Unoson, Cecilia;
Elf, Johan

Publication type:

Article

Lost in presumption: stochastic reactions in spatial models.

Published in:

Nature Methods, 2012, v. 9, n. 12, p. 1163, doi. 10.1038/nmeth.2253

By:

Mahmutovic, Anel;
Fange, David;
Berg, Otto G;
Elf, Johan

Publication type:

Article

Association between changed self-rated health and the risk of venous thromboembolism in Malmö Preventive Program: a cohort study.

Published in:

Journal of Thrombosis & Thrombolysis, 2024, v. 57, n. 3, p. 497, doi. 10.1007/s11239-023-02933-4

By:

Nymberg, Peter;
Milos Nymberg, Veronica;
Calling, Susanna;
Engström, Gunnar;
Svensson, Peter;
Elf, Johan;
Zöller, Bengt

Publication type:

Article

Incidental pulmonary embolism in patients with cancer: prevalence, underdiagnosis and evaluation of an AI algorithm for automatic detection of pulmonary embolism.

Published in:

European Radiology, 2023, v. 33, n. 2, p. 1185, doi. 10.1007/s00330-022-09071-0

By:

Wiklund, Peder;
Medson, Koshiar;
Elf, Johan

Publication type:

Article

Pointwise error estimates in localization microscopy.

Published in:

Nature Communications, 2017, v. 8, n. 5, p. 15115, doi. 10.1038/ncomms15115

By:

Lindén, Martin;
Ćurić, Vladimir;
Amselem, Elias;
Elf, Johan

Publication type:

Article

Transcription factor binding kinetics constrain noise suppression via negative feedback.

Published in:

Nature Communications, 2013, v. 4, n. 5, p. 1864, doi. 10.1038/ncomms2867

By:

Grönlund, Andreas;
Lötstedt, Per;
Elf, Johan

Publication type:

Article

Clinical implications of different risk factor profiles in patients with mesenteric venous thrombosis and systemic venous thromboembolism: a population-based study.

Published in:

Journal of Thrombosis & Thrombolysis, 2019, v. 47, n. 4, p. 572, doi. 10.1007/s11239-019-01816-x

By:

Salim, Saman;
Zarrouk, Moncef;
Elf, Johan;
Gottsäter, Anders;
Sveinsdottir, Signy;
Svensson, Peter;
Acosta, Stefan

Publication type:

Article

The diagnostic performance of APC–PCI complex determination compared to d-dimer in the diagnosis of deep vein thrombosis.

Published in:

Journal of Thrombosis & Thrombolysis, 2010, v. 29, n. 4, p. 465, doi. 10.1007/s11239-009-0426-z

By:

Elf, Johan;
Strandberg, Karin;
Svensson, Peter

Publication type:

Article

Ribosome bypassing at serine codons as a test of the model of selective transfer RNA charging.

Published in:

EMBO Reports, 2005, v. 6, n. 2, p. 147, doi. 10.1038/sj.embor.7400332

By:

Lindsley, Dale;
Bonthuis, Paul;
Gallant, Jonathan;
Tofoleanu, Teodora;
Elf, Johan;
Ehrenberg, Måns

Publication type:

Article

Selective charging of tRNA isoacceptors induced by amino-acid starvation.

Published in:

EMBO Reports, 2005, v. 6, n. 2, p. 151, doi. 10.1038/sj.embor.7400341

By:

Dittmar, Kimberly A.;
Sørensen, Michael A.;
Elf, Johan;
Ehrenberg, Måns;
Pan, Tao

Publication type:

Article

The Escherichia coli chromosome moves to the replisome.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50047-z

By:

Gras, Konrad;
Fange, David;
Elf, Johan

Publication type:

Article

The highly dynamic nature of bacterial heteroresistance impairs its clinical detection.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02052-x

By:

Pereira, Cátia;
Larsson, Jimmy;
Hjort, Karin;
Elf, Johan;
Andersson, Dan I.

Publication type:

Article

Stochastic Reaction-Diffusion Processes with Embedded Lower-Dimensional Structures.

Published in:

Bulletin of Mathematical Biology, 2014, v. 76, n. 4, p. 819, doi. 10.1007/s11538-013-9910-x

By:

Wang, Siyang;
Elf, Johan;
Hellander, Stefan;
Lötstedt, Per

Publication type:

Article

What matters for lac repressor search in vivo-sliding, hopping, intersegment transfer, crowding on DNA or recognition?

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3454, doi. 10.1093/nar/gkv207

By:

Mahmutovic, Anel;
Berg, Otto G.;
Elf, Johan

Publication type:

Article

Genetic risk factors for venous thromboembolism.

Published in:

Expert Review of Hematology, 2020, v. 13, n. 9, p. 971, doi. 10.1080/17474086.2020.1804354

By:

Zöller, Bengt;
Svensson, Peter J.;
Dahlbäck, Björn;
Lind-Hallden, Christina;
Hallden, Christer;
Elf, Johan

Publication type:

Article

Treatment with direct oral anticoagulants in patients with upper extremity deep vein thrombosis.

Published in:

Thrombosis Journal, 2017, v. 15, p. 1, doi. 10.1186/s12959-017-0149-x

By:

Sánchez Montiel, Francisco;
Ghazvinian, Raein;
Gottsäter, Anders;
Elf, Johan

Publication type:

Article