Works matching DE "DNA-protein interactions"

Results: 1116

Exposing the secrets of sex determination.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 6, p. 437, doi. 10.1038/nsmb.3042

By:

Rohs, Remo;
Machado, Ana Carolina Dantas;
Yang, Lin

Publication type:

Article

An ancient protein-DNA interaction underlying metazoan sex determination.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 6, p. 442, doi. 10.1038/nsmb.3032

By:

Murphy, Mark W;
Lee, John K;
Rojo, Sandra;
Gearhart, Micah D;
Kurahashi, Kayo;
Banerjee, Surajit;
Loeuille, Guy-André;
Bashamboo, Anu;
McElreavey, Kenneth;
Zarkower, David;
Aihara, Hideki;
Bardwell, Vivian J

Publication type:

Article

DNA methylation: old dog, new tricks?

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 11, p. 949, doi. 10.1038/nsmb.2910

By:

Spruijt, Cornelia G;
Vermeulen, Michiel

Publication type:

Article

Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 4, p. 389, doi. 10.1038/nsmb.2785

By:

Nowak, Elżbieta;
Miller, Jennifer T;
Bona, Marion K;
Studnicka, Justyna;
Szczepanowski, Roman H;
Jurkowski, Jakub;
Le Grice, Stuart F J;
Nowotny, Marcin

Publication type:

Article

RPA antagonizes microhomology-mediated repair of DNA double-strand breaks.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 4, p. 405, doi. 10.1038/nsmb.2786

By:

Deng, Sarah K;
Gibb, Bryan;
de Almeida, Mariana Justino;
Greene, Eric C;
Symington, Lorraine S

Publication type:

Article

Two-way communications between ubiquitin-like modifiers and DNA.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 4, p. 317, doi. 10.1038/nsmb.2805

By:

Ulrich, Helle D

Publication type:

Article

A direct interaction between DCP1 and XRN1 couples mRNA decapping to 5? exonucleolytic degradation.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 12, p. 1324, doi. 10.1038/nsmb.2413

By:

Braun, Joerg E;
Truffault, Vincent;
Boland, Andreas;
Huntzinger, Eric;
Chang, Chung-Te;
Haas, Gabrielle;
Weichenrieder, Oliver;
Coles, Murray;
Izaurralde, Elisa

Publication type:

Article

Nonspecifically bound proteins spin while diffusing along DNA.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 12, p. 1224, doi. 10.1038/nsmb.1716

By:

Blainey, Paul C.;
Guobin Luo;
Kou, S. C.;
Mangel, Walter F.;
Verdine, Gregory L.;
Biman Bagchi;
X. Sunney Xie

Publication type:

Article

Positive selection of DNA-protein interactions in mammalian cells through phenotypic coupling with retrovirus production.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 11, p. 1195, doi. 10.1038/nsmb.1677

By:

Tschulena, Ulrich;
Peterson, Kenneth R.;
Gonzalez, Beatriz;
Fedosyuk, Halyna;
Barbas III, Carlos F.

Publication type:

Article

Visualizing one-dimensional diffusion of proteins along DNA.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 8, p. 768, doi. 10.1038/nsmb.1441

By:

Gorman, Jason;
Greene, Eric C.

Publication type:

Article

Three-dimensional intricacies in protein-DNA recognition and transcriptional control.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 12, p. 1118, doi. 10.1038/nsmb1207-1118

By:

Harrison, Stephen C.

Publication type:

Article

H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 5, p. 441, doi. 10.1038/nsmb1233

By:

Bouffartigues, Emeline;
Buckle, Malcolm;
Badaut, Cyril;
Travers, Andrew;
Rimsky, Sylvie

Publication type:

Article

Amino acid residues in Rag1 crucial for DNA hairpin formation.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 11, p. 1010, doi. 10.1038/nsmb1154

By:

Lu, Catherine P.;
Sandoval, Hector;
Brandt, Vicky L.;
Rice, Phoebe A.;
Roth, David B.

Publication type:

Article

Probing the activation-promoted structural rearrangements in preassembled receptor–G protein complexes.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 9, p. 778, doi. 10.1038/nsmb1134

By:

Galés, Céline;
Van Durm, Joost J. J.;
Schaak, Stéphane;
Pontier, Stéphanie;
Percherancier, Yann;
Audet, Martin;
Paris, Hervé;
Bouvier, Michel

Publication type:

Article

Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 6, p. 549, doi. 10.1038/nsmb1102

By:

Shundrovsky, Alla;
Smith, Corey L;
Lis, John T;
Peterson, Craig L;
Wang, Michelle D

Publication type:

Article

Research Highlights.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 3, p. 194, doi. 10.1038/nsmb0306-194

By:

Hwa-ping Feng;
Konforti, Boyana;
Moore, Dorothy;
Schmidt, Tracy Smith

Publication type:

Article

Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 3, p. 272, doi. 10.1038/nsmb1051

By:

Hirano, Satoshi;
Kawasaki, Masato;
Ura, Hideaki;
Kato, Ryuichi;
Raiborg, Camilla;
Stenmark, Harald;
Wakatsuki, Soichi

Publication type:

Article

Bacterial chromosomes: IPOD maps occupied territory.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 10, p. 690, doi. 10.1038/nrmicro2226

By:

Jermy, Andrew

Publication type:

Article

Bacterial DNA repair by non-homologous end joining.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 11, p. 852, doi. 10.1038/nrmicro1768

By:

Shuman, Stewart;
Glickman, Michael S.

Publication type:

Article

Ribbon–helix–helix transcription factors: variations on a theme.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 9, p. 710, doi. 10.1038/nrmicro1717

By:

Schreiter, Eric R.;
Drennan, Catherine L.

Publication type:

Article

N<sup>6</sup>-methyl-adenine: an epigenetic signal for DNA–protein interactions.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 3, p. 183, doi. 10.1038/nrmicro1350

By:

Wion, Didier;
Casadesús, Josep

Publication type:

Article

Topologically‐Interlocked Minicircles as Probes of DNA Topology and DNA–Protein Interactions.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 22, p. 1, doi. 10.1002/chem.202200839

By:

Rajendran, Arivazhagan;
Krishnamurthy, Kirankumar;
Park, Seojeong;
Nakata, Eiji;
Kwon, Youngjoo;
Morii, Takashi

Publication type:

Article

Front Cover: Topologically‐Interlocked Minicircles as Probes of DNA Topology and DNA‐Protein Interactions (Chem. Eur. J. 22/2022).

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 22, p. 1, doi. 10.1002/chem.202200838

By:

Rajendran, Arivazhagan;
Krishnamurthy, Kirankumar;
Park, Seojeong;
Nakata, Eiji;
Kwon, Youngjoo;
Morii, Takashi

Publication type:

Article

Topologically‐Interlocked Minicircles as Probes of DNA Topology and DNA‐Protein Interactions.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 22, p. 1, doi. 10.1002/chem.202200108

By:

Rajendran, Arivazhagan;
Krishnamurthy, Kirankumar;
Park, Seojeong;
Nakata, Eiji;
Kwon, Youngjoo;
Morii, Takashi

Publication type:

Article

Acetophenyl‐thienyl‐aniline‐Linked Nucleotide for Construction of Solvatochromic Fluorescence Light‐Up DNA Probes Sensing Protein‐DNA Interactions.

Published in:

Chemistry - A European Journal, 2021, v. 27, n. 24, p. 7090, doi. 10.1002/chem.202100575

By:

Güixens‐Gallardo, Pedro;
Hocek, Michal

Publication type:

Article

Frontispiece: O<sup>6</sup>‐Alkylguanine DNA Alkyltransferase Mediated Disassembly of a DNA Tetrahedron.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 65, p. 1, doi. 10.1002/chem.202002565

By:

Copp, William;
Wilds, Christopher J.

Publication type:

Article

Selection of DNA-Encoded Small Molecule Libraries Against Unmodified and Non-Immobilized Protein Targets.

Published in:

Angewandte Chemie, 2014, v. 126, n. 38, p. 10220, doi. 10.1002/ange.201404830

By:

Zhao, Peng;
Chen, Zitian;
Li, Yizhou;
Sun, Dawei;
Gao, Yuan;
Huang, Yanyi;
Li, Xiaoyu

Publication type:

Article

Proteins searching for their target on DNA by one-dimensional diffusion: overcoming the 'speed-stability' paradox.

Published in:

Journal of Biological Physics, 2013, v. 39, n. 3, p. 565, doi. 10.1007/s10867-013-9310-3

By:

Yu, Shi;
Wang, Shihu;
Larson, Ronald

Publication type:

Article

DNA condensation by TmHU studied by optical tweezers, AFM and molecular dynamics simulations.

Published in:

Journal of Biological Physics, 2011, v. 37, n. 1, p. 117, doi. 10.1007/s10867-010-9203-7

By:

Wagner, Carolin;
Olbrich, Carsten;
Brutzer, Hergen;
Salomo, Mathias;
Kleinekathöfer, Ulrich;
Keyser, Ulrich;
Kremer, Friedrich

Publication type:

Article

Do Femtonewton Forces Affect Genetic Function? A Review.

Published in:

Journal of Biological Physics, 2006, v. 32, n. 2, p. 73, doi. 10.1007/s10867-005-9002-8

By:

Blumberg, Seth;
Pennington, Matthew W.;
Meiners, Jens-Christian

Publication type:

Article

Retraction Note: Diatom-based biosynthesis of gold–silica nanocomposite and their DNA binding affinity.

Published in:

Journal of Applied Phycology, 2025, v. 37, n. 2, p. 1523, doi. 10.1007/s10811-025-03510-3

By:

Roychoudhury, Piya;
Nandi, Camellia;
Pal, Ruma

Publication type:

Article

CUT&RUN detects distinct DNA footprints of RNA polymerase II near the transcription start sites.

Published in:

Chromosome Research, 2020, v. 28, n. 3/4, p. 381, doi. 10.1007/s10577-020-09643-0

By:

Miura, Michi;
Chen, Honglin

Publication type:

Article

The ecdysone receptor (ScEcR-A) binds DNA puffs at the start of DNA amplification in Sciara coprophila.

Published in:

Chromosome Research, 2013, v. 21, n. 4, p. 345, doi. 10.1007/s10577-013-9360-1

By:

Liew, Gerald;
Foulk, Michael;
Gerbi, Susan

Publication type:

Article

FeS-Induced Radical Formation and Its Effect on Plasmid DNA.

Published in:

Aquatic Geochemistry, 2011, v. 17, n. 4/5, p. 545, doi. 10.1007/s10498-010-9116-x

By:

Rickard, D.;
Hatton, B.;
Murphy, D. M.;
Butler, I. B.;
Oldroyd, A.;
Hann, A.

Publication type:

Article

Robust $$k$$ -mer frequency estimation using gapped $$k$$ -mers.

Published in:

Journal of Mathematical Biology, 2014, v. 69, n. 2, p. 469, doi. 10.1007/s00285-013-0705-3

By:

Ghandi, Mahmoud;
Mohammad-Noori, Morteza;
Beer, Michael

Publication type:

Article

Inhibitory effect of short cationic homopeptides against Gram-negative bacteria.

Published in:

Amino Acids, 2016, v. 48, n. 6, p. 1445, doi. 10.1007/s00726-016-2198-z

By:

Carvajal-Rondanelli, Patricio;
Aróstica, Mónica;
Marshall, Sergio;
Albericio, Fernando;
Álvarez, Claudio;
Ojeda, Claudia;
Aguilar, Luis;
Guzmán, Fanny

Publication type:

Article

FRET-based analysis of protein-nucleic acid interactions by genetically incorporating a fluorescent amino acid.

Published in:

Amino Acids, 2015, v. 47, n. 4, p. 729, doi. 10.1007/s00726-014-1900-2

By:

Park, Hyojin;
Kang, Heejin;
Ko, Wooseok;
Lee, Wonkoo;
Jo, Kyubong;
Lee, Hyun

Publication type:

Article

Analysis of DNA interactions using single-molecule force spectroscopy.

Published in:

Amino Acids, 2013, v. 44, n. 6, p. 1457, doi. 10.1007/s00726-013-1474-4

By:

Ritzefeld, Markus;
Walhorn, Volker;
Anselmetti, Dario;
Sewald, Norbert

Publication type:

Article

Advances in the study of protein-DNA interaction.

Published in:

Amino Acids, 2012, v. 43, n. 3, p. 1141, doi. 10.1007/s00726-012-1377-9

By:

Cai, Yu-Hang;
Huang, He

Publication type:

Article

High-affinity binding site for a specific nuclear protein in the human IgM gene.

Published in:

Nature, 1985, p. 289, doi. 10.1038/314289a0

By:

Hennighausen, Lothar;
Siebenlist, Ulrich;
Danner, David;
Leder, Philip;
Rawlins, Dan;
Rosenfeld, Philip;
Kelly Jr, Thomas

Publication type:

Article

Taken with a grain of salt.

Published in:

Nature, 1985, p. 223, doi. 10.1038/314223a0

By:

Zakian, Virginia A.

Publication type:

Article

MotifHyades: expectation maximization for de novo DNA motif pair discovery on paired sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3028, doi. 10.1093/bioinformatics/btx381

By:

Ka-Chun Wong

Publication type:

Article

DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3003, doi. 10.1093/bioinformatics/btx336

By:

Wenxiu Ma;
Lin Yang;
Rohs, Remo;
Stafford Noble, William

Publication type:

Article

GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2258, doi. 10.1093/bioinformatics/btx150

By:

Stricker, Georg;
Engelhardt, Alexander;
Schulz, Daniel;
Schmid, Matthias;
Tresch, Achim;
Gagneur, Julien

Publication type:

Article

BEESEM: estimation of binding energy models using HT-SELEX data.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2288, doi. 10.1093/bioinformatics/btx191

By:

Shuxiang Ruan;
Swamidass, S. Joshua;
Stormo, Gary D.

Publication type:

Article

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1570, doi. 10.1093/bioinformatics/btx016

By:

Xing Tang;
Srivastava, Arunima;
Huayang Liu;
Machiraju, Raghu;
Kun Huang;
Leone, Gustavo

Publication type:

Article

Convolutional neural network architectures for predicting DNA-protein binding.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i21, doi. 10.1093/bioinformatics/btw255

By:

Haoyang Zeng;
Edwards, Matthew D.;
Ge Liu;
Gifford, David K.

Publication type:

Article

ALP & FALP: C++ libraries for pairwise local alignment E-values.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 304, doi. 10.1093/bioinformatics/btv575

By:

Sheetlin, Sergey;
Park, Yonil;
Frith, Martin C.;
Spouge, John L.

Publication type:

Article

agplus: a rapid and flexible tool for aggregation plots.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3046, doi. 10.1093/bioinformatics/btv322

By:

Kazumitsu Maehara;
Yasuyuki Ohkawa

Publication type:

Article

Using combined evidence from replicates to evaluate ChIP-seq peaks.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2761, doi. 10.1093/bioinformatics/btv293

By:

Jalili, Vahid;
Matteucci, Matteo;
Masseroli, Marco;
Morelli, Marco J.

Publication type:

Article