Works matching DE "RIBOSOMAL RNA"

Results: 5000

H/ACA snR30 snoRNP guides independent 18S rRNA subdomain formation.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59656-8

By:

Fischer, Paulina;
Thoms, Matthias;
Lau, Benjamin;
Denk, Timo;
Kuvshinova, Maria;
Berninghausen, Otto;
Flemming, Dirk;
Hurt, Ed;
Beckmann, Roland

Publication type:

Article

RsmG methylation of 16S rRNA affects the function of ribosomal protein uS12.

Published in:

Archives of Microbiology, 2025, v. 207, n. 7, p. 1, doi. 10.1007/s00203-025-04349-5

By:

Bell, Trevor W.;
Turner, Rowan M.;
Merryman, Amanda M.;
Joseph, Juliana J.;
Gregory, Steven T.;
O'Connor, Michael

Publication type:

Article

Fecal carriage of multidrug-resistant organisms increases the risk of hepatic encephalopathy in patients with cirrhosis: insights from gut microbiota and metabolite features.

Published in:

Gut Pathogens, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13099-025-00706-3

By:

Wu, Pei-Shan;
Lee, Pei-Chang;
Chang, Tien-En;
Hsieh, Yun-Cheng;
Huang, Chi-Wei;
Lin, Chao-Hsiung;
Huang, Yi-Long;
Lin, Yi-Tsung;
Huo, Teh-Ia;
Schnabl, Bernd;
Lee, Kuei-Chuan;
Hou, Ming-Chih

Publication type:

Article

Unveiling the impact of 16S rRNA gene intergenomic variation on primer design and gut microbiome profiling.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1573920

By:

Sunthornthummas, Sirinthorn;
Wasitthankasem, Rujipat;
Phokhaphan, Pimonwan;
Sudtachat, Nirinya;
Wilantho, Alisa;
Ngamphiw, Chumpol;
Chareanchim, Wanwisa;
Tongsima, Sissades

Publication type:

Article

The impact of dietary salt on the development of hypertension and gut microbiome dysbiosis in captive-bred vervet monkeys (Chlorocebus aethiops).

Published in:

BMC Veterinary Research, 2025, v. 21, n. 1, p. 1, doi. 10.1186/s12917-025-04795-9

By:

Magwebu, Zandisiwe Emilia;
Khoza, Sanele;
Mazinu, Mikateko;
Jordaan, Esme;
Ghai, Meenu;
Chauke, Chesa Gift

Publication type:

Article

The unresolved struggle of 16S rRNA amplicon sequencing: a benchmarking analysis of clustering and denoising methods.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00705-6

By:

Fares, Mohamed;
Tharwat, Engy K.;
Cleenwerck, Ilse;
Monsieurs, Pieter;
Van Houdt, Rob;
Vandamme, Peter;
El-Hadidi, Mohamed;
Mysara, Mohamed

Publication type:

Article

Ammonia nigami sp. nov., a new rotaliid benthic foraminifer from coastal Odisha, east coast of India, Bay of Bengal.

Published in:

Micropaleontology, 2025, v. 71, n. 3, p. 253, doi. 10.47894/mpal.71.3.03

By:

Kaushik, Tushar;
Dixit, Vaishnavi

Publication type:

Article

Occurrence of Mycoplasma spp. in the golden-headed lion tamarin (Leontopithecus chrysomelas) in Southern Bahia, Brazil.

Published in:

Archives of Veterinary Science, 2025, v. 30, n. 1, p. 1, doi. 10.5380/avs.v30i1.97591

By:

Oliveira Costa, Thaise da Silva;
Volkart de Oliveira, Uillians;
Munhoz, Alexandre Dias;
De Vleeschouwer, Kristel Myrian;
de Carvalho Oliveira, Leonardo;
Camargos Fonseca, Paula Luize;
da Cunha Nogueira, Selene Siqueira

Publication type:

Article

Optimization and evaluation of 18S rDNA V4-based metabarcoding analysis of Tripos species.

Published in:

Journal of Applied Phycology, 2025, v. 37, n. 2, p. 1089, doi. 10.1007/s10811-024-03428-2

By:

Li, Yingchao;
Chen, Nansheng

Publication type:

Article

Characterization of gut dysbiosis and intestinal barrier dysfunction in patients with metabolic dysfunction-associated steatotic liver disease and chronic kidney disease: a comparative study.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00237-6

By:

Dissayabutra, Thasinas;
Chuaypen, Natthaya;
Somnark, Pornjira;
Boonkaew, Bootsakorn;
Udomkarnjananun, Suwasin;
Kittiskulnam, Piyawan;
Charoenchittang, Pimpisa;
Prombutara, Pinidphon;
Tangkijvanich, Pisit

Publication type:

Article

Taxonomic status and phylogenetic analyses based on complete mitochondrial genome and microscopic ossicles: Redescription of a controversial tropical sea cucumber species (Holothuroidea, Holothuria Linnaeus, 1767).

Published in:

Zoosystematics & Evolution, 2025, v. 101, n. 2, p. 791, doi. 10.3897/zse.101.137781

By:

Jia, Chenghao;
Xu, Zening;
Li, Fengping;
Chen, Liuna;
Wang, Aimin;
Gao, Fei

Publication type:

Article

Structure of the Prokaryotic Community in Bottom Sediments of the Alginsky Hydro-Mineral Natural Complex (Barguzin Depression, Russia).

Published in:

Microbiology (00262617), 2025, v. 94, n. 2, p. 308, doi. 10.1134/S0026261724608868

By:

Lavrentyeva, E. V.;
Nikitina, E. P.;
Banzaraktsaeva, T. G.;
Dambaev, V. B.;
Merkel, A. Y.

Publication type:

Article

Isolation and Characterization of a Violacein Pigment-Producing Psychrotolerant BacteriumIodobactersp. Strain S-LB17.

Published in:

Microbiology (00262617), 2025, v. 94, n. 2, p. 302, doi. 10.1134/S0026261724608893

By:

Zakharova, Yu. R.;
Marchenkov, A. M.;
Fedorova, G. A.;
Bedoshvili, Ye. D.;
Petrova, D. P.

Publication type:

Article

Under-Ice Bacterial and Microeukaryotic Communities of the Maloe More Strait (Lake Baikal).

Published in:

Microbiology (00262617), 2025, v. 94, n. 2, p. 172, doi. 10.1134/S002626172460890X

By:

Bashenkhaeva, M. V.;
Zakharova, Yu. R.;
Galachyants, Yu. P.;
Petrova, D. P.;
Sakirko, M. V.;
Khanaev, I. V.;
Likhoshway, Ye. V.

Publication type:

Article

A Cohort Effect on AOM/DSS Colorectal Cancer Model Performance in C57BL/6 Mice.

Published in:

Journal of Evolutionary Biochemistry & Physiology, 2025, v. 61, n. 2, p. 438, doi. 10.1134/S0022093025020061

By:

Achasova, K. M.;
Kozhevnikova, E. N.

Publication type:

Article

Bioinformatic approaches to blood and tissue microbiome analyses: challenges and perspectives.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf176

By:

Sirasani, Jammi Prasanthi;
Gardner, Cory;
Jung, Gihwan;
Lee, Hyunju;
Ahn, Tae-Hyuk

Publication type:

Article

Elementary methods provide more replicable results in microbial differential abundance analysis.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf130

By:

Pelto, Juho;
Auranen, Kari;
Kujala, Janne V;
Lahti, Leo

Publication type:

Article

Changes in Gut Microbiota in Patients with Multiple Sclerosis Based on 16s rRNA Gene Sequencing Technology: A Review and Meta-Analysis.

Published in:

Journal of Integrative Neuroscience, 2024, v. 23, n. 7, p. 1, doi. 10.31083/j.jin2307127

By:

Xiaoyun Zhang;
Zhiqiang Wei;
Zhen Liu;
Weiwei Yang;
Yaping Huai

Publication type:

Article

BOPAL 2.0 and a study of tRNA and rRNA gene evolution in Clostridium.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021400072

By:

Chua, Meghan;
Tan, Anthony;
Tremblay-Savard, Olivier

Publication type:

Article

Direct interaction network inference for compositional data via codaloss.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 6, p. N.PAG, doi. 10.1142/S0219720020500377

By:

Chen, Liang;
He, Shun;
Zhai, Yuyao;
Deng, Minghua

Publication type:

Article

Comparative metagenome analysis of an Alaskan glacier.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 2, p. -1, doi. 10.1142/S0219720014410030

By:

Choudhari, Sulbha;
Lohia, Ruchi;
Grigoriev, Andrey

Publication type:

Article

Identification and species-typing of wood rotting fungi using melting curve analysis.

Published in:

Journal of Wood Science, 2013, v. 59, n. 5, p. 432, doi. 10.1007/s10086-013-1349-z

By:

Horisawa, Sakae;
Sakuma, Yoh;
Doi, Shuichi

Publication type:

Article

Isomorphic Fluorescent Nucleosides Facilitate Real‐Time Monitoring of RNA Depurination by Ribosome Inactivating Proteins.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 35, p. 1, doi. 10.1002/chem.202200994

By:

Cong, Deyuan;
Li, Yao;
Ludford, Paul T.;
Tor, Yitzhak

Publication type:

Article

Influence of 16S rRNA reference databases in amplicon-based environmental microbiome research.

Published in:

Biotechnology Letters, 2022, v. 44, n. 3, p. 523, doi. 10.1007/s10529-022-03233-2

By:

Ramakodi, Meganathan P.

Publication type:

Article

CRISPR/Cas9-mediated genome editing in Penicillium oxalicum and Trichoderma reesei using 5S rRNA promoter-driven guide RNAs.

Published in:

Biotechnology Letters, 2021, v. 43, n. 2, p. 495, doi. 10.1007/s10529-020-03024-7

By:

Wang, Qi;
Zhao, Qinqin;
Liu, Qin;
He, Xin;
Zhong, Yaohua;
Qin, Yuqi;
Gao, Liwei;
Liu, Guodong;
Qu, Yinbo

Publication type:

Article

Identification of internal control genes for circular RNAs.

Published in:

Biotechnology Letters, 2019, v. 41, n. 10, p. 1111, doi. 10.1007/s10529-019-02723-0

By:

Zhong, Shanliang;
Zhou, Siying;
Yang, Sujin;
Yu, Xinnian;
Xu, Hanzi;
Wang, Jinyan;
Zhang, Qian;
Lv, Mengmeng;
Feng, Jifeng

Publication type:

Article

Optimization of the purine operon and energy generation in Bacillus amyloliquefaciens for guanosine production.

Published in:

Biotechnology Letters, 2017, v. 39, n. 11, p. 1675, doi. 10.1007/s10529-017-2412-4

By:

Liao, Yuling;
Ye, Yanrui;
Wang, Bin;
Pan, Li

Publication type:

Article

Detection of the dinoflagellate, Cochlodinium polykrikoides, that forms algal blooms using sandwich hybridization integrated with nuclease protection assay.

Published in:

Biotechnology Letters, 2016, v. 38, n. 1, p. 57, doi. 10.1007/s10529-015-1947-5

By:

Suh, Sung-Suk;
Park, Mirye;
Hwang, Jinik;
Kil, Eui-Joon;
Lee, Sukchan;
Lee, Taek-Kyun

Publication type:

Article

Hunting for cultivable Micromonospora strains in soils of the Atacama Desert.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 8, p. 1375, doi. 10.1007/s10482-018-1049-1

By:

Carro, Lorena;
Razmilic, Valeria;
Nouioui, Imen;
Richardson, Lee;
Pan, Che;
Golinska, Patrycja;
Asenjo, Juan A.;
Bull, Alan T.;
Klenk, Hans-Peter;
Goodfellow, Michael

Publication type:

Article

Amycolatopsis cappadoca sp. nov., isolated from soil.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 7, p. 1175, doi. 10.1007/s10482-018-1023-y

By:

Işık, Kamil;
Gençbay, Talha;
Topkara, Ahmet Rıdvan;
Sarıcaoğlu, Salih;
Saygın, Hayrettin;
Ay, Hilal;
Çetin, Demet;
Güven, Kıymet;
Şahin, Nevzat

Publication type:

Article

Diversity patterns and isolation of Planctomycetes associated with metalliferous deposits from hydrothermal vent fields along the Valu Fa Ridge (SW Pacific).

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 6, p. 841, doi. 10.1007/s10482-018-1026-8

By:

Storesund, Julia Endresen;
Lanzèn, Anders;
García-Moyano, Antonio;
Reysenbach, Anna-Louise;
Øvreås, Lise

Publication type:

Article

<italic>Ponticoccus alexandrii</italic> sp. nov., a novel bacterium isolated from the marine toxigenic dinoflagellate <italic>Alexandrium minutum</italic>.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 6, p. 995, doi. 10.1007/s10482-017-0996-2

By:

Yang, Qiao;
Zhang, Xiaoling;
Li, Lingzhi;
Zhang, Ruonan;
Feng, Lijuan;
Mu, Jun

Publication type:

Article

<italic>Robiginitalea sediminis</italic> sp. nov., isolated from a sea cucumber culture pond.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 6, p. 905, doi. 10.1007/s10482-017-0989-1

By:

Zhang, Jing;
Han, Ji-Ru;
Chen, Guan-Jun;
Du, Zong-Jun

Publication type:

Article

<italic>Algoriphagus formosus</italic> sp. nov., isolated from coastal sediment.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 6, p. 913, doi. 10.1007/s10482-017-0990-8

By:

Ye, Meng-Qi;
Wang, Xu-Ting;
Zhang, Jing;
Chen, Guan-Jun;
Du, Zong-Jun

Publication type:

Article

<italic>Streptomyces ginkgonis</italic> sp. nov., an endophyte from <italic>Ginkgo biloba</italic>.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 6, p. 891, doi. 10.1007/s10482-017-0987-3

By:

Yan, Xia;
Li, Yanfang;
Wang, Nana;
Chen, Yue;
Huang, Li-li

Publication type:

Article

Distinct diversity patterns of <italic>Planctomycetes</italic> associated with the freshwater macrophyte <italic>Nuphar lutea</italic> (L.) Smith.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 6, p. 811, doi. 10.1007/s10482-017-0986-4

By:

Ivanova, Anastasia A.;
Philippov, Dmitriy A.;
Kulichevskaya, Irina S.;
Dedysh, Svetlana N.

Publication type:

Article

<italic>Maribacter marinus</italic> sp. nov. isolated from a deep-sea seamount.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 6, p. 883, doi. 10.1007/s10482-017-0985-5

By:

Wang, Dan-Yang;
Sun, Ya-Wen;
Liu, Jie;
Zhang, De-Chao

Publication type:

Article

<italic>Kribbella podocarpi</italic> sp. nov., isolated from the leaves of a yellowwood tree (<italic>Podocarpus latifolius</italic>).

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 6, p. 875, doi. 10.1007/s10482-017-0984-6

By:

Curtis, Sarah M.;
Norton, Iulia;
Everest, Gareth J.;
Meyers, Paul R.

Publication type:

Article

Evidence from the gut microbiota of swarming alates of a vertical transmission of the bacterial symbionts in <italic>Nasutitermes arborum</italic> (Termitidae, Nasutitermitinae).

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 4, p. 573, doi. 10.1007/s10482-017-0978-4

By:

Diouf, Michel;
Hervé, Vincent;
Mora, Philippe;
Robert, Alain;
Frechault, Sophie;
Rouland-Lefèvre, Corinne;
Miambi, Edouard

Publication type:

Article

Polyphasic taxonomic characterisation of a novel strain as <italic>Pararhizobium haloflavum</italic> sp. nov., isolated from soil samples near a sewage treatment tank.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 4, p. 485, doi. 10.1007/s10482-017-0969-5

By:

Shen, Xia;
Li, Yu;
Zhao, Zhe;
Han, Yi-Fan;
Zhang, Wen-Wu;
Yu, Xiao-Yun;
Zhang, Chong-Ya;
Sun, Cong;
Wu, Min

Publication type:

Article

<italic>Cellulomonas macrotermitis</italic> sp. nov., a chitinolytic and cellulolytic bacterium isolated from the hindgut of a fungus-growing termite.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 3, p. 471, doi. 10.1007/s10482-017-0968-6

By:

Sun, Xinxin;
Li, Jingjing;
Du, Jiao;
Xiao, Hesheng;
Ni, Jinfeng

Publication type:

Article

Characterization of fungi causing lesion blight on <italic>Papaver dubium</italic> in Iran.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 3, p. 437, doi. 10.1007/s10482-017-0966-8

By:

Razaghi, Parisa;
Zafari, Doustmorad

Publication type:

Article

Diversity and dynamics of lactic acid bacteria in <italic>Atole agrio</italic>, a traditional maize-based fermented beverage from South-Eastern Mexico, analysed by high throughput sequencing and culturing.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 3, p. 385, doi. 10.1007/s10482-017-0960-1

By:

Pérez-Cataluña, Alba;
Elizaquível, Patricia;
Carrasco, Purificación;
Espinosa, Judith;
Reyes, Dolores;
Wacher, Carmen;
Aznar, Rosa

Publication type:

Article

<italic>Larkinella terrae</italic> sp. nov., isolated from soil on Jeju Island, South Korea.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 3, p. 333, doi. 10.1007/s10482-017-0955-y

By:

Ten, Leonid N.;
Jeon, Jongguen;
Park, Su-Jin;
Park, Sangkyu;
Lee, Seung-Yeol;
Kim, Myung Kyum;
Jung, Hee-Young

Publication type:

Article

<italic>Sphingorhabdus buctiana</italic> sp. nov., isolated from fresh water, and reclassification of <italic>Sphingopyxis contaminans</italic> as <italic>Sphingorhabdus contaminans</italic> comb. nov.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 3, p. 323, doi. 10.1007/s10482-017-0954-z

By:

Chen, Hanyi;
Piao, Ai-Lian;
Tan, Xu;
Nogi, Yuichi;
Yeo, Jina;
Lu, Han;
Feng, Qing-Qing;
Lv, Jie

Publication type:

Article

Bacterial and archaeal communities inhabiting mussels, sediment and water in Indonesian anchialine lakes.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 2, p. 237, doi. 10.1007/s10482-017-0944-1

By:

Cleary, D. F. R.;
Polónia, A. R. M.

Publication type:

Article

Chitinophaga salinisoli sp. nov., isolated from saline soil.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 2, p. 265, doi. 10.1007/s10482-017-0947-y

By:

Dong, Wei-wei;
Kong, De-long;
Zhang, Qi;
Zhu, Jie;
Wang, Yan-wei;
Song, Jin-long;
Zhou, Yi-qing;
Jiang, Xu;
Zhang, Wei;
Zhao, Shu-miao;
Ruan, Zhi-yong

Publication type:

Article

Microbial diversity in acidic thermal pools in the Uzon Caldera, Kamchatka.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 1, p. 35, doi. 10.1007/s10482-017-0924-5

By:

Mardanov, Andrey V.;
Gumerov, Vadim M.;
Beletsky, Alexey V.;
Ravin, Nikolai V.

Publication type:

Article

Verrucosispora rhizosphaerae sp. nov., isolated from mangrove rhizosphere soil.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 1, p. 125, doi. 10.1007/s10482-017-0933-4

By:

Xie, Qing-yi;
Bao, Xiao-dong;
Ma, Qing-yu;
Kong, Fan-dong;
Zhou, Man-li;
Yan, Bing;
Zhao, You-xing

Publication type:

Article

Phytoactinopolyspora halotolerans sp. nov., a halotolerant actinobacterium isolated from a saline soil in Xinjiang, northwest of China.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 1, p. 27, doi. 10.1007/s10482-017-0923-6

By:

Ji, Yang;
Chunyu, Wei-Xun;
Li, En-Yuan;
Ding, Zhang-Gui;
Yin, Min;
Zhao, Yu-Rong;
Wang, Yun;
Tang, Shu-Kun

Publication type:

Article