Works matching AU Yohda, Masafumi

Results: 97

Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.

Published in:

Angewandte Chemie, 2015, v. 127, n. 37, p. 10913, doi. 10.1002/ange.201502731

By:

Yamanaka, Yasuaki;
Kato, Yuki;
Hashimoto, Koichi;
Iida, Keisuke;
Nagasawa, Kazuo;
Nakayama, Hiroshi;
Dohmae, Naoshi;
Noguchi, Keiichi;
Noguchi, Takumi;
Yohda, Masafumi;
Odaka, Masafumi

Publication type:

Article

Overexpression of prefoldin from the hyperthermophilic archaeum Pyrococcus horikoshii OT3 endowed Escherichia coli with organic solvent tolerance.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 79, n. 3, p. 443, doi. 10.1007/s00253-008-1450-1

By:

Okochi, Mina;
Kanie, Kei;
Kurimoto, Masaki;
Yohda, Masafumi;
Honda, Hiroyuki

Publication type:

Article

Harnessing Odorant Receptor Activation to Suppress Real Malodor.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 4, p. 1566, doi. 10.3390/ijms26041566

By:

Kanemaki, Reina;
Kishigami, Kahori;
Saito, Mei;
Yohda, Masafumi;
Fukutani, Yosuke

Publication type:

Article

Antagonists Enhance Cell-Surface Expression of Mammalian Odorant Receptors.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 4, p. 1458, doi. 10.3390/ijms26041458

By:

Takayama, Ikumi;
Araki, Nako;
Tewari, Jeevan;
Yohda, Masafumi;
Matsunami, Hiroaki;
Fukutani, Yosuke

Publication type:

Article

Structural and functional characterization of aspartate racemase from the acidothermophilic archaeon Picrophilus torridus.

Published in:

Extremophiles, 2016, v. 20, n. 4, p. 385, doi. 10.1007/s00792-016-0829-7

By:

Aihara, Takayuki;
Ito, Toshiya;
Yamanaka, Yasuaki;
Noguchi, Keiichi;
Odaka, Masafumi;
Sekine, Masae;
Homma, Hiroshi;
Yohda, Masafumi

Publication type:

Article

Construction and characterization of the hetero-oligomer of the group II chaperonin from the hyperthermophilic archaeon, Thermococcus sp. strain KS-1.

Published in:

Extremophiles, 2009, v. 13, n. 3, p. 437, doi. 10.1007/s00792-009-0229-3

By:

Sahlan, Muhamad;
Kanzaki, Taro;
Yohda, Masafumi

Publication type:

Article

Comparative analysis of the protein folding activities of two chaperonin subunits of Thermococcus strain KS-1: the effects of beryllium fluoride.

Published in:

Extremophiles, 2007, v. 11, n. 2, p. 225, doi. 10.1007/s00792-006-0026-1

By:

Yoshida, Takao;
Iizuka, Ryo;
Itami, Keisuke;
Yasunaga, Takuo;
Sakuraba, Haruhiko;
Ohshima, Toshihisa;
Yohda, Masafumi;
Maruyama, Tadashi

Publication type:

Article

Contribution of the C-terminal region to the thermostability of the archaeal group II chaperonin from Thermococcus sp. strain KS-1.

Published in:

Extremophiles, 2006, v. 10, n. 5, p. 451, doi. 10.1007/s00792-006-0519-y

By:

Yoshida, Takao;
Kanzaki, Taro;
Iizuka, Ryo;
Komada, Toshihiro;
Zako, Tamotsu;
Suzuki, Rintaro;
Maruyama, Tadashi;
Yohda, Masafumi

Publication type:

Article

Molecular characterization of the group II chaperonin from the hyperthermophilic archaeumPyrococcus horikoshiiOT3.

Published in:

Extremophiles, 2005, v. 9, n. 2, p. 127, doi. 10.1007/s00792-004-0427-y

By:

Okochi, Mina;
Matsuzaki, Hiroki;
Nomura, Tomoko;
Ishii, Noriyuki;
Yohda, Masafumi

Publication type:

Article

Bridging human chaperonopathies and microbial chaperonins.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0318-5

By:

Conway de Macario, Everly;
Yohda, Masafumi;
Macario, Alberto J. L.;
Robb, Frank T.

Publication type:

Article

ATP Dependent Rotational Motion of Group II Chaperonin Observed by X-ray Single Molecule Tracking

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0064176

By:

Sekiguchi, Hiroshi;
Nakagawa, Ayumi;
Moriya, Kazuki;
Makabe, Koki;
Ichiyanagi, Kouhei;
Nozawa, Shunsuke;
Sato, Tokushi;
Adachi, Shin-ichi;
Kuwajima, Kunihiro;
Yohda, Masafumi;
Sasaki, Yuji C.

Publication type:

Article

Properties and Crystal Structure of Methylenetetrahydrofolate Reductase from Thermus thermophilus HB8.

Published in:

PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023716

By:

Igari, Sayaka;
Ohtaki, Akashi;
Yamanaka, Yasuaki;
Sato, Yuichi;
Yohda, Masafumi;
Odaka, Masafumi;
Noguchi, Keiichi;
Yamada, Kazuhiro

Publication type:

Article

A zeolite as a tool for successful refolding of PEGylated proteins and their reassembly with tertiary structures.

Published in:

Biotechnology Progress, 2019, v. 35, n. 5, p. N.PAG, doi. 10.1002/btpr.2853

By:

Sonotaki, Seiichi;
Noguchi, Keiichi;
Yohda, Masafumi;
Murakami, Yoshihiko

Publication type:

Article

Immobilization of Cholesterol Oxidase from Streptomyces Sp. on Magnetite Silicon Dioxide by Crosslinking Method for Cholesterol Oxidation.

Published in:

Applied Biochemistry & Biotechnology, 2020, v. 191, n. 3, p. 968, doi. 10.1007/s12010-020-03241-w

By:

Perdani, Meka Saima;
Sahlan, Muhamad;
Yohda, Masafumi;
Hermansyah, Heri

Publication type:

Article

Construction of a Positive Selection Marker by a Lethal Gene with the Amber Stop Codon(s) Regulator.

Published in:

Bioscience, Biotechnology & Biochemistry, 2006, v. 70, n. 1, p. 119, doi. 10.1271/bbb.70.119

By:

Sumiko Ohashi-Kunihiro;
Hagiwara, Hiroko;
Yohda, Masafumi;
Masaki, Haruhiko;
Machida, Masayuki

Publication type:

Article

Development of an integrated automation system with a magnetic bead-mediated nucleic acid purification device for genetic analysis and gene manipulation.

Published in:

Biotechnology & Bioengineering, 2004, v. 86, n. 6, p. 667, doi. 10.1002/bit.20049

By:

Akutsu, Jun-ichi;
Tojo, Yuriko;
Segawa, Osamu;
Obata, Kimimichi;
Okochi, Mina;
Tajima, Hideji;
Yohda, Masafumi

Publication type:

Article

Preparation of Thermus thermophilus holo-chaperonin-immobilized microspheres with high ability to facilitate protein refolding.

Published in:

Biotechnology & Bioengineering, 2000, v. 68, n. 2, p. 184, doi. 10.1002/(SICI)1097-0290(20000420)68:2<184::AID-BIT7>3.0.CO;2-5

By:

Teshima, Tadanaru;
Kohda, Jiro;
Kondo, Akihiko;
Taguchi, Hideki;
Yohda, Masafumi;
Fukuda, Hideki

Publication type:

Article

A method of expression for an oxygen-tolerant group III alcohol dehydrogenase from Pyrococcus horikoshii OT3.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2017, v. 22, n. 4, p. 527, doi. 10.1007/s00775-017-1439-2

By:

Sugimoto, Chikanobu;
Takeda, Kouta;
Kariya, Yumi;
Matsumura, Hirotoshi;
Yohda, Masafumi;
Ohno, Hiroyuki;
Nakamura, Nobuhumi

Publication type:

Article

Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2010, v. 15, n. 5, p. 655, doi. 10.1007/s00775-010-0632-3

By:

Yamanaka, Yasuaki;
Hashimoto, Koichi;
Ohtaki, Akashi;
Noguchi, Keiichi;
Yohda, Masafumi;
Odaka, Masafumi

Publication type:

Article

Two kinds of archaeal group II chaperonin subunits with different thermostability in Thermococcus strain KS-1.

Published in:

Molecular Microbiology, 2002, v. 44, n. 3, p. 761, doi. 10.1046/j.1365-2958.2002.02909.x

By:

Yoshida, Takao;
Ideno, Akira;
Suzuki, Rintaro;
Yohda, Masafumi;
Maruyama, Tadashi

Publication type:

Article

Assessment, Mitigation, and Control of Potential Gas Leakage in Existing Buildings Not Designed for Gas Installation in Indonesia.

Published in:

Energies (19961073), 2018, v. 11, n. 11, p. 2970, doi. 10.3390/en11112970

By:

Hermansyah, Heri;
Nur Hidayat, Mohamad Evi;
Kumaraningrum, Anggraini Ratih;
Yohda, Masafumi;
Shariff, Azmi B. Mohd

Publication type:

Article

Photoreactive Nitrile Hydratase: The Photoreaction Site Is Located on the α Subunit1.

Published in:

Journal of Biochemistry, 1996, v. 119, n. 3, p. 407, doi. 10.1093/oxfordjournals.jbchem.a021256

By:

Tsujimura, Masanari;
Odaka, Masafumi;
Nagashima, Shigehiro;
Yohda, Masafumi;
Endo, Isao

Publication type:

Article

Corrigendum: Crystal structures of highly simplified BPTIs provide insights into hydration-driven increase of unfolding enthalpy.

Published in:

Scientific Reports, 2017, p. 46798, doi. 10.1038/srep46798

By:

Monirul Islam, Mohammad;
Yohda, Masafumi;
Kidokoro, Shun-ichi;
Kuroda, Yutaka

Publication type:

Article

Crystal structures of highly simplified BPTIs provide insights into hydration-driven increase of unfolding enthalpy.

Published in:

Scientific Reports, 2017, p. 41205, doi. 10.1038/srep41205

By:

Islam, Mohammad Monirul;
Yohda, Masafumi;
Kidokoro, Shun-ichi;
Kuroda, Yutaka

Publication type:

Article

Vapor detection and discrimination with a panel of odorant receptors.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06806-w

By:

Kida, Hitoshi;
Fukutani, Yosuke;
Mainland, Joel D.;
de March, Claire A.;
Vihani, Aashutosh;
Li, Yun Rose;
Chi, Qiuyi;
Toyama, Akemi;
Liu, Linda;
Kameda, Masaharu;
Yohda, Masafumi;
Matsunami, Hiroaki

Publication type:

Article

Novel CYP2C19 629c>a mutant gene detection in Japanese subjects and estimation of its effect on conformation.

Published in:

Drug Discoveries & Therapeutics, 2010, v. 4, n. 6, p. 412

By:

Kimura, Sayaka;
Hasegawa, Setsuo;
Kobayashi, Ai;
Yamaguchi, Hiroki;
Yohda, Masafumi;
Kubota, Takahiro

Publication type:

Article

Asymmetry in the function and dynamics of the cytosolic group II chaperonin CCT/TRiC.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0176054

By:

Yamamoto, Yohei Y.;
Uno, Yuko;
Sha, Eiryo;
Ikegami, Kentaro;
Ishii, Noriyuki;
Dohmae, Naoshi;
Sekiguchi, Hiroshi;
Sasaki, Yuji C.;
Yohda, Masafumi

Publication type:

Article

Identification of two critical amino acid residues in short-chain aldehyde-responsive odorant receptors.

Published in:

Journal of Biochemistry, 2024, v. 176, n. 2, p. 119, doi. 10.1093/jb/mvae033

By:

Kanemaki, Reina;
Hayakawa, Toshiya;
Kudo, Haruto;
Yohda, Masafumi;
Fukutani, Yosuke

Publication type:

Article

Functional expression of thiocyanate hydrolase is promoted by its activator protein, P15K

Published in:

FEBS Letters, 2006, v. 580, n. 19, p. 4667, doi. 10.1016/j.febslet.2006.07.051

By:

Kataoka, Shingo;
Arakawa, Takatoshi;
Hori, Shota;
Katayama, Yoko;
Hara, Yoshiko;
Matsushita, Yasuhiko;
Nakayama, Hiroshi;
Yohda, Masafumi;
Nyunoya, Hiroshi;
Dohmae, Naoshi;
Maeda, Mizuo;
Odaka, Masafumi

Publication type:

Article

Facilitated release of substrate protein from prefoldin by chaperonin

Published in:

FEBS Letters, 2005, v. 579, n. 17, p. 3718, doi. 10.1016/j.febslet.2005.05.061

By:

Zako, Tamotsu;
Iizuka, Ryo;
Okochi, Mina;
Nomura, Tomoko;
Ueno, Taro;
Tadakuma, Hisashi;
Yohda, Masafumi;
Funatsu, Takashi

Publication type:

Article

Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases

Published in:

FEBS Letters, 2002, v. 528, n. 1-3, p. 114, doi. 10.1016/S0014-5793(02)03264-7

By:

Liu, Lijun;
Iwata, Kousuke;
Yohda, Masafumi;
Miki, Kunio

Publication type:

Article

Characterization of a sHsp of Schizosaccharomyces pombe, SpHsp15.8, and the implication of its functional mechanism by comparison with another sHsp, SpHsp16.0.

Published in:

Proteins, 2009, v. 74, n. 1, p. 6, doi. 10.1002/prot.22132

By:

Sugino, Chika;
Hirose, Maya;
Tohda, Hideki;
Yoshinari, Yukiko;
Abe, Tetsuya;
Giga-Hama, Yuko;
Iizuka, Ryo;
Shimizu, Masafumi;
Kidokoro, Shun-ichi;
Ishii, Noriyuki;
Yohda, Masafumi

Publication type:

Article

Crystal structure of PH1733, an aspartate racemase homologue, from pyrococcus horikoshii OT3.

Published in:

Proteins, 2009, v. 74, n. 1, p. 240, doi. 10.1002/prot.22244

By:

Kita, Akiko;
Tasaki, Shuhei;
Yohda, Masafumi;
Miki, Kunio

Publication type:

Article

Role of the IXI/V motif in oligomer assembly and function of StHsp14.0, a small heat shock protein from the acidothermophilic archaeon, Sulfolobus tokodaii strain 7.

Published in:

Proteins, 2008, v. 71, n. 2, p. 771, doi. 10.1002/prot.21762

By:

Saji, Hitoshi;
Iizuka, Ryo;
Yoshida, Takao;
Abe, Tetsuya;
Kidokoro, Shun-ichi;
Ishii, Noriyuki;
Yohda, Masafumi

Publication type:

Article

Dynamics of group II chaperonin and prefoldin probed by <sup>13</sup>C NMR spectroscopy.

Published in:

Proteins, 2008, v. 70, n. 4, p. 1257, doi. 10.1002/prot.21606

By:

Kurimoto, Eiji;
Nishi, Yohei;
Yamaguchi, Yoshiki;
Zako, Tamotsu;
Iizuka, Ryo;
Ide, Naoki;
Yohda, Masafumi;
Kato, Koichi

Publication type:

Article

Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism.

Published in:

Proteins, 2008, v. 70, n. 4, p. 1167, doi. 10.1002/prot.21528

By:

Ohtaki, Akashi;
Nakano, Yohsuke;
Iizuka, Ryo;
Arakawa, Takatoshi;
Yamada, Kazuhiro;
Odaka, Masafumi;
Yohda, Masafumi

Publication type:

Article

Roles of conserved basic amino acid residues and activation mechanism of the hyperthermophilic aspartate racemase at high temperature.

Published in:

Proteins, 2006, v. 64, n. 2, p. 502, doi. 10.1002/prot.21010

By:

Yoshida, Takumitsu;
Seko, Tomohiro;
Okada, Okimasa;
Iwata, Kousuke;
Liu, Lijun;
Miki, Kunio;
Yohda, Masafumi

Publication type:

Article

Optimizing Exosome Preparation Based on Size and Morphology: Insights From Electron Microscopy.

Published in:

Microscopy & Microanalysis, 2023, v. 29, n. 6, p. 2068, doi. 10.1093/micmic/ozad103

By:

Ishii, Noriyuki;
Noguchi, Keiichi;
Ikemoto, Mitsushi J;
Yohda, Masafumi;
Odahara, Takayuki

Publication type:

Article

Isolation of cyanide-degrading bacteria and molecular characterization of its cyanide-degrading nitrilase.

Published in:

Biotechnology & Applied Biochemistry, 2022, v. 69, n. 1, p. 183, doi. 10.1002/bab.2095

By:

Ayane Terada;
Daisuke Komatsu;
Takahiro Ogawa;
Flamandita, Darin;
Sahlan, Muhamad;
Minoru Nishimura;
Masafumi Yohda

Publication type:

Article

Quantitative discrimination of 16 S rRNA genes of Dehalococcoides species by MagSNiPer, a quantitative single-nucleotide-polymorphism genotyping method.

Published in:

Biotechnology & Applied Biochemistry, 2008, v. 51, n. 2, p. 111, doi. 10.1042/BA20070238

By:

Yohda, Masafumi;
Kobayashi, Ai;
Ohishi, Shoji;
Ebisawa, Maiko;
Sakihara, Sakari;
Kakihara, Fumiko;
Tojo, Yuriko;
Tajima, Hideji;
Nishimura, Minoru

Publication type:

Article

Detection and identification of Dehalococcoides species responsible for in situ dechlorination of trichloroethene to ethene enhanced by hydrogen-releasing compounds.

Published in:

Biotechnology & Applied Biochemistry, 2008, v. 51, n. 1, p. 1, doi. 10.1042/BA20070171

By:

Nishimura, Minoru;
Ebisawa, Maiko;
Sakihara, Sakari;
Kobayashi, Ai;
Nakama, Tetsushi;
Okochi, Mina;
Yohda, Masafumi

Publication type:

Article

Functional and structural characterization of HspB1/Hsp27 from Chinese hamster ovary cells.

Published in:

FEBS Open Bio, 2019, v. 9, n. 10, p. 1826, doi. 10.1002/2211-5463.12726

By:

Sha, Eiryo;
Nakamura, Manami;
Ankai, Kazuya;
Yamamoto, Yohei Y.;
Oka, Toshihiko;
Yohda, Masafumi

Publication type:

Article

NADH oxidase and alkyl hydroperoxide reductase subunit C (peroxiredoxin) from Amphibacillus xylanus form an oligomeric assembly.

Published in:

FEBS Open Bio, 2015, v. 5, p. 124, doi. 10.1016/j.fob.2015.01.005

By:

Arai, Toshiaki;
Kimata, Shinya;
Mochizuki, Daichi;
Hara, Keita;
Zako, Tamotsu;
Odaka, Masafumi;
Yohda, Masafumi;
Arisaka, Fumio;
Kanamaru, Shuji;
Matsumoto, Takashi;
Yajima, Shunsuke;
Sato, Junichi;
Kawasaki, Shinji;
Niimura, Youichi

Publication type:

Article

Identification and classification of honey's authenticity by attenuated total reflectance Fourier-transform infrared spectroscopy and chemometric method.

Published in:

Veterinary World, 2019, v. 12, n. 8, p. 1304, doi. 10.14202/vetworld.2019.1304-1310

By:

Sahlan, Muhamad;
Karwita, Seffiani;
Gozan, Misri;
Hermansyah, Heri;
Masafumi Yohda;
Young Je Yoo;
Pratami, Diah Kartika

Publication type:

Article

Solid-Phase Nested Deletion: A New Subcloning-less Method for Generating Nested Deletions.

Published in:

DNA Research, 1995, v. 2, n. 4, p. 175

By:

Yohda, Masafumi;
Kato, Nobuko;
Endo, Isao

Publication type:

Article

Goniothalamin enhances the ATPase activity of the molecular chaperone Hsp90 but inhibits its chaperone activity.

Published in:

Journal of Biochemistry, 2015, v. 157, n. 3, p. 161, doi. 10.1093/jb/mvu061

By:

Yokoyama, Yuhei;
Ohtaki, Aguru;
Jantan, Ibrahim;
Yohda, Masafumi;
Nakamoto, Hitoshi

Publication type:

Article

StHsp14.0, a small heat shock protein of Sulfolobus tokodaii strain 7, protects denatured proteins from aggregation in the partially dissociated conformation.

Published in:

Journal of Biochemistry, 2011, v. 150, n. 4, p. 403, doi. 10.1093/jb/mvr074

By:

Abe, Tetsuya;
Oka, Toshihiko;
Nakagome, Atsushi;
Tsukada, Yoshihiro;
Yasunaga, Takuo;
Yohda, Masafumi

Publication type:

Article

Characterization of a Thermostable Enzyme with Phosphomannomutase/Phosphoglucomutase Activities from the Hyperthermophilic Archaeon Pyrococcus horikoshii OT3.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 2, p. 159, doi. 10.1093/jb/mvi115

By:

Akutsu, Jun-ichi;
Zilian Zhang;
Tsujimura, Masanari;
Sasaki, Mayumi;
Yohda, Masafumi;
Kawarabayasi, Yutaka

Publication type:

Article

FtsH Recognizes Proteins with Unfolded Structure and Hydrolyzes the Carboxyl Side of Hydrophobic Residues1.

Published in:

Journal of Biochemistry, 2000, v. 127, n. 5, p. 931, doi. 10.1093/oxfordjournals.jbchem.a022689

By:

Asahara, Yuko;
Atsuta, Kyoko;
Motohashi, Ken;
Taguchi, Hideki;
Yohda, Masafumi;
Yoshida, Masasuke

Publication type:

Article

Functional Expression of Nitrile Hydratase in Escherichia coli: Requirement of a Nitrile Hydratase Activator and Post-Translational Modification of a Ligand Cysteine1.

Published in:

Journal of Biochemistry, 1999, v. 125, n. 4, p. 696, doi. 10.1093/oxfordjournals.jbchem.a022339

By:

Nojiri, Masaki;
Yohda, Masafumi;
Odaka, Masafumi;
Matsushita, Yusuke;
Tsujimura, Masanari;
Yoshida, Takao;
Dohmae, Naoshi;
Takio, Koji;
Endo, Isao

Publication type:

Article