Works matching Non-coding DNA

Results: 1810

Gene editing of non-coding regulatory DNA and its application in crop improvement.

Published in:

Journal of Experimental Botany, 2023, v. 74, n. 19, p. 6158, doi. 10.1093/jxb/erad313

By:

Chen, Yu-Hao;
Lu, Jun;
Yang, Xia;
Huang, Li-Chun;
Zhang, Chang-Quan;
Liu, Qiao-Quan;
Li, Qian-Feng

Publication type:

Article

Pericentromeric Non-Coding DNA Transcription Is Associated with Niche Impairment in Patients with Ineffective or Partially Effective Multiple Myeloma Treatment.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 6, p. 3359, doi. 10.3390/ijms23063359

By:

Enukashvily, Natella I.;
Semenova, Natalia;
Chubar, Anna V.;
Ostromyshenskii, Dmitry I.;
Gushcha, Ekaterina A.;
Gritsaev, Sergei;
Bessmeltsev, Stanislav S.;
Rugal, Viktor I.;
Prikhodko, Egor M.;
Kostroma, Ivan;
Zherniakova, Anastasia;
Kotova, Anastasia V.;
Belik, Liubov A.;
Shumeev, Alexander;
Maslennikova, Irina I.;
Ivolgin, Dmitry I.

Publication type:

Article

Sc-ncDNAPred: A Sequence-Based Predictor for Identifying Non-coding DNA in Saccharomyces cerevisiae.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.02174

By:

Wenying He;
Ying Ju;
Xiangxiang Zeng;
Xiangrong Liu;
Quan Zou

Publication type:

Article

Behaviour of repetitive non-coding DNA in response to heavy metal stress in the protonemata of Funaria hygrometrica.

Published in:

Plant Biosystems, 2015, v. 149, n. 2, p. 315, doi. 10.1080/11263504.2013.824040

By:

Bassi, P.;
Basile, A.;
Sorbo, S.

Publication type:

Article

Corrigendum: NCNet: Deep Learning Network Models for Predicting Function of Non-Coding DNA.

Published in:

2019

By:

Zhang, Hanyu;
Hung, Che-Lun;
Liu, Meiyuan;
Hu, Xiaoye;
Lin, Yi-Yang

Publication type:

Correction Notice

NCNet: Deep Learning Network Models for Predicting Function of Non-coding DNA.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00432

By:

Zhang, Hanyu;
Hung, Che-Lun;
Liu, Meiyuan;
Hu, Xiaoye;
Lin, Yi-Yang

Publication type:

Article

Comparative analysis of non-coding and coding DNA mutations in flat urothelial lesions: biological implications and insights.

Published in:

Virchows Archiv: European Journal of Pathology, 2025, v. 486, n. 4, p. 729, doi. 10.1007/s00428-024-03901-w

By:

Musangile, Fidele Y.;
Matsuzaki, Ibu;
Iwamoto, Ryuta;
Sagan, Kanako;
Nishikawa, Mizuki;
Mikasa, Yurina;
Takahashi, Yuichi;
Higashine, Ryoma;
Kojima, Fumiyoshi;
Hara, Isao;
Murata, Shin-ichi

Publication type:

Article

DNA Methylation and Non-Coding RNAs during Tissue-Injury Associated Pain.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 2, p. 752, doi. 10.3390/ijms23020752

By:

Irfan, Jahanzaib;
Febrianto, Muhammad Rizki;
Sharma, Anju;
Rose, Thomas;
Mahmudzade, Yasamin;
Di Giovanni, Simone;
Nagy, Istvan;
Torres-Perez, Jose Vicente

Publication type:

Article

General Designs Reveal Distinct Codes in Protein-Coding and Non-Coding Human DNA.

Published in:

Genes, 2022, v. 13, n. 11, p. 1970, doi. 10.3390/genes13111970

By:

Cohen, Dana

Publication type:

Article

The Genomic Code: A Pervasive Encoding/Molding of Chromatin Structures and a Solution of the "Non‐Coding DNA" Mystery.

Published in:

BioEssays, 2019, v. 41, n. 12, p. N.PAG, doi. 10.1002/bies.201900106

By:

Bernardi, Giorgio

Publication type:

Article

Evaluation of Variations in Plastid DNA Non-coding Regions in Selected Species of the Genus Solanum.

Published in:

Czech Journal of Genetics & Plant Breeding, 2017, v. 53, n. 3, p. 127, doi. 10.17221/76/2015-CJGPB

By:

SEDLÁKOVÁ, VLADIMíRA;
SEDLÁK, PETR;
ZEKA, DUKAGJIN;
DOMKÁŘOVÁ, JAROSLAVA;
DOLEŽAL, PETR;
VEJL, PAVEL

Publication type:

Article

The DNA methylation profile of non-coding RNAs improves prognosis prediction for pancreatic adenocarcinoma.

Published in:

Cancer Cell International, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12935-019-0828-8

By:

Zhang, Jie;
Shi, Keqing;
Huang, Weiguo;
Weng, Wanqing;
Zhang, Zhongjing;
Guo, Yangyang;
Deng, Tuo;
Xiang, Yukai;
Ni, Xiaofeng;
Chen, Bicheng;
Zhou, Mengtao

Publication type:

Article

Regulatory and Functional Involvement of Long Non-Coding RNAs in DNA Double-Strand Break Repair Mechanisms.

Published in:

Cells (2073-4409), 2021, v. 10, n. 6, p. 1506, doi. 10.3390/cells10061506

By:

Papaspyropoulos, Angelos;
Lagopati, Nefeli;
Mourkioti, Ioanna;
Angelopoulou, Andriani;
Kyriazis, Spyridon;
Liontos, Michalis;
Gorgoulis, Vassilis;
Kotsinas, Athanassios

Publication type:

Article

Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6101-7

By:

Chen, Rui;
Li, Ming;
Zhang, Huiyuan;
Duan, Lijin;
Sun, Xianjun;
Jiang, Qiyan;
Zhang, Hui;
Hu, Zheng

Publication type:

Article

Junk DNA and the long non-coding RNA twist in cancer genetics.

Published in:

Oncogene, 2015, v. 34, n. 39, p. 5003, doi. 10.1038/onc.2014.456

By:

Ling, H;
Vincent, K;
Pichler, M;
Fodde, R;
Berindan-Neagoe, I;
Slack, F J;
Calin, G A

Publication type:

Article

Ultraconserved Non-coding DNA within Diptera and Hymenoptera.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.120.401502

By:

Brody, Thomas;
Yavatkar, Amarendra;
Kuzin, Alexander;
Odenwald, Ward F.

Publication type:

Article

When junk DNA turns functional: transposon-derived non-coding RNAs in plants.

Published in:

Journal of Experimental Botany, 2021, v. 72, n. 11, p. 4132, doi. 10.1093/jxb/erab073

By:

Ariel, Federico D;
Manavella, Pablo A

Publication type:

Article

Effect of Long Non-coding RNA and DNA Methylation on Gene Expression in Dental Fluorosis.

Published in:

Biological Trace Element Research, 2024, v. 202, n. 1, p. 221, doi. 10.1007/s12011-023-03660-w

By:

Hu, Xiaoyan;
Li, Huiru;
Yang, Minzhi;
Chen, Yujiong;
Zeng, Ailin;
Wu, Jiayuan;
Zhang, Jian;
Tian, Yuan;
Tang, Jing;
Qian, Shengyan;
Wu, Mingsong

Publication type:

Article

Epigenetic Biomarkers Screening of Non-Coding RNA and DNA Methylation Based on Peripheral Blood Monocytes in Smokers.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.766553

By:

Huang, Xiaowei;
Wu, Bian;
Zhang, Fangxue;
Chen, Fancheng;
Zhang, Yong;
Guo, Huizhi;
Zhang, Hongtao

Publication type:

Article

Genetic diversity and relationship between cultivated, weedy and wild rye species as revealed by chloroplast and mitochondrial DNA non-coding regions analysis.

Published in:

PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0213023

By:

Skuza, Lidia;
Szućko, Izabela;
Filip, Ewa;
Strzała, Tomasz

Publication type:

Article

Understanding non-coding DNA regions in yeast.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 6, p. 1654, doi. 10.1042/BST20130144

By:

Schlackow, Margarita;
Gullerova, Monika

Publication type:

Article

Protection of the genome and the central exome by peripheral non‐coding DNA against DNA damage in health, ageing and age‐related diseases.

Published in:

Biological Reviews, 2025, v. 100, n. 2, p. 508, doi. 10.1111/brv.13151

By:

Qiu, Guo‐Hua;
Fu, Mingjun;
Zheng, Xintian;
Huang, Cuiqin

Publication type:

Article

Non‐coding regulatory elements: Potential roles in disease and the case of epilepsy.

Published in:

Neuropathology & Applied Neurobiology, 2022, v. 48, n. 3, p. 1, doi. 10.1111/nan.12775

By:

Pagni, Susanna;
Mills, James D.;
Frankish, Adam;
Mudge, Jonathan M.;
Sisodiya, Sanjay M.

Publication type:

Article

Decoding non-coding DNA: Trash or treasure?

Published in:

Resonance: Journal of Science Education, 2011, v. 16, n. 4, p. 333, doi. 10.1007/s12045-011-0039-7

By:

Iyer, Namrata

Publication type:

Article

The protective function of non-coding DNA in DNA damage accumulation with age and its roles in age-related diseases.

Published in:

Biogerontology, 2019, v. 20, n. 6, p. 741, doi. 10.1007/s10522-019-09832-3

By:

Qiu, Guo-Hua;
Zheng, Xintian;
Fu, Mingjun;
Huang, Cuiqin;
Yang, Xiaoyan

Publication type:

Article

Improving the Quantification of DNA Sequences Using Evolutionary Information Based on Deep Learning.

Published in:

Cells (2073-4409), 2019, v. 8, n. 12, p. 1635, doi. 10.3390/cells8121635

By:

Tayara, Hilal;
Chong, Kil To

Publication type:

Article

Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases.

Published in:

Human Molecular Genetics, 2024, v. 33, n. 19, p. 1697, doi. 10.1093/hmg/ddae109

By:

Kin, Katherine;
Bhogale, Shounak;
Zhu, Lisha;
Thomas, Derrick;
Bertol, Jessica;
Zheng, W Jim;
Sinha, Saurabh;
Fakhouri, Walid D

Publication type:

Article

Unique Features of Satellite DNA Transcription in Different Tissues of Caenorhabditis elegans.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 2970, doi. 10.3390/ijms24032970

By:

Subirana, Juan A.;
Messeguer, Xavier

Publication type:

Article

Non-canonical antigens are the largest fraction of peptides presented by MHC class I in mismatch repair deficient murine colorectal cancer.

Published in:

Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-023-01275-3

By:

Rospo, Giuseppe;
Chilà, Rosaria;
Matafora, Vittoria;
Basso, Veronica;
Lamba, Simona;
Bartolini, Alice;
Bachi, Angela;
Di Nicolantonio, Federica;
Mondino, Anna;
Germano, Giovanni;
Bardelli, Alberto

Publication type:

Article

Contribution of introns to the species diversity associated with the apicomplexan parasite, Neospora caninum.

Published in:

Parasitology Research, 2020, v. 119, n. 2, p. 431, doi. 10.1007/s00436-019-06561-x

By:

Calarco, Larissa;
Ellis, John

Publication type:

Article

An Alternative Molecular View of Evolution: How DNA was Altered over Geological Time.

Published in:

2020

By:

Menger, Fredric M.

Publication type:

Editorial

The NFKB1 Promoter Polymorphism (-94ins/delATTG) Is Associated with Susceptibility to Cytomegalovirus Infection after Kidney Transplantation and Should Have Implications on CMV Prophylaxis Regimens.

Published in:

Cells (2073-4409), 2021, v. 10, n. 2, p. 380, doi. 10.3390/cells10020380

By:

Nowak, Hartmuth;
Vornweg, Svenja;
Rump, Katharina;
Rahmel, Tim;
Unterberg, Matthias;
Koos, Björn;
Schenker, Peter;
Viebahn, Richard;
Adamzik, Michael;
Bergmann, Lars;
Barnea, Eytan R

Publication type:

Article

Phylogenetic utility of the trnH- psbA IGR and stem-loop diversity of the 3′ UTR in Cactaceae (Caryophyllales).

Published in:

Plant Systematics & Evolution, 2017, v. 303, n. 3, p. 299, doi. 10.1007/s00606-016-1372-9

By:

Hernández-Ledesma, Patricia;
Bárcenas, Rolando

Publication type:

Article

3D Genome Plasticity in Normal and Diseased Neurodevelopment.

Published in:

Genes, 2022, v. 13, n. 11, p. 1999, doi. 10.3390/genes13111999

By:

Plaza-Jennings, Amara;
Valada, Aditi;
Akbarian, Schahram

Publication type:

Article

Pleiotropic Enhancers are Ubiquitous Regulatory Elements in the Human Genome.

Published in:

Genome Biology & Evolution, 2022, v. 14, n. 6, p. 1, doi. 10.1093/gbe/evac071

By:

Laiker, Ian;
Frankel, Nicolás

Publication type:

Article

Tandem Repeats in Bacillus : Unique Features and Taxonomic Distribution.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 10, p. 5373, doi. 10.3390/ijms22105373

By:

Subirana, Juan A.;
Messeguer, Xavier;
Plohl, Miroslav;
Šatović, Eva;
Chaves, Raquel

Publication type:

Article

Bioinformatic Evaluation of Features on Cis-regulatory Elements at 6q25.1.

Published in:

Bioinformatics & Biology Insights, 2023, p. 1, doi. 10.1177/11779322231167971

By:

Sreekar, N;
Shrestha, Smeeta

Publication type:

Article

Target capture data resolve recalcitrant relationships in the coffee family (Rubioideae, Rubiaceae).

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.967456

By:

Thureborn, Olle;
Razafimandimbison, Sylvain G.;
Wikström, Niklas;
Rydin, Catarina

Publication type:

Article

Patterns of variation in cis-regulatory regions: examining evidence of purifying selection.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-017-4422-y

By:

Naidoo, Thijessen;
Sjödin, Per;
Schlebusch, Carina;
Jakobsson, Mattias

Publication type:

Article

Distinguishing Genetic Drift from Selection in Papillomavirus Evolution.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 8, p. 1631, doi. 10.3390/v15081631

By:

Burk, Robert D.;
Mirabello, Lisa;
DeSalle, Robert

Publication type:

Article

Adaptive evolution of non-coding DNA in Drosophila.

Published in:

Nature, 2005, v. 437, n. 7062, p. 1149, doi. 10.1038/nature04107

By:

Andolfatto, Peter

Publication type:

Article

ChromDL: a next-generation regulatory DNA classifier.

Published in:

Bioinformatics, 2023, v. 39, p. i377, doi. 10.1093/bioinformatics/btad217

By:

Hill, Christopher;
Hudaiberdiev, Sanjarbek;
Ovcharenko, Ivan

Publication type:

Article

Disruption of regulatory domains and novel transcripts as disease‐causing mechanisms.

Published in:

BioEssays, 2023, v. 45, n. 10, p. 1, doi. 10.1002/bies.202300010

By:

Allou, Lila;
Mundlos, Stefan

Publication type:

Article

Structural variation and its potential impact on genome instability: Novel discoveries in the EGFR landscape by long-read sequencing.

Published in:

PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0226340

By:

Cook, George W.;
Benton, Michael G.;
Akerley, Wallace;
Mayhew, George F.;
Moehlenkamp, Cynthia;
Raterman, Denise;
Burgess, Daniel L.;
Rowell, William J.;
Lambert, Christine;
Eng, Kevin;
Gu, Jenny;
Baybayan, Primo;
Fussell, John T.;
Herbold, Heath D.;
O'Shea, John M.;
Varghese, Thomas K.;
Emerson, Lyska L.

Publication type:

Article

Non-coding Regions of Mitochondrial DNA and the cox1 Gene Reveal Genetic Variability Among Local Belarusian Populations of the Causative Agent of Cercarial Dermatitis, Bird Schistosome Trichobilharzia szidati (Digenea: Schistosomatidae).

Published in:

Acta Parasitologica, 2021, v. 66, n. 4, p. 1193, doi. 10.1007/s11686-021-00371-x

By:

Chrisanfova, Galina;
Mozharovskaya, Lyudmila;
Zhukova, Tatyana;
Nefedova, Darya;
Semyenova, Seraphima

Publication type:

Article

Molecular evolution and phylogenetic utility of non-coding DNA: applications from species to deep level questions.

Published in:

2009

By:

Borsch, Thomas;
Quandt, Dietmar;
Koch, Marcus

Publication type:

Editorial

Homology in coding and non-coding DNA sequences: a parsimony perspective.

Published in:

Plant Systematics & Evolution, 2009, v. 282, n. 3/4, p. 151, doi. 10.1007/s00606-008-0095-y

By:

Ochoterena, Helga

Publication type:

Article

Application of non-coding DNA regions in intraspecific analyses.

Published in:

Plant Systematics & Evolution, 2009, v. 282, n. 3/4, p. 281, doi. 10.1007/s00606-008-0036-9

By:

Pleines, Thekla;
Jakob, Sabine S.;
Blattner, Frank R.

Publication type:

Article

Non-coding nuclear DNA markers in phylogenetic reconstruction.

Published in:

Plant Systematics & Evolution, 2009, v. 282, n. 3/4, p. 257, doi. 10.1007/s00606-008-0031-1

By:

Calonje, Miriam;
Martín-Bravo, Santiago;
Dobeš, Christoph;
Gong, Wei;
Jordon-Thaden, Ingrid;
Kiefer, Christiane;
Kiefer, Markus;
Paule, Juraj;
Schmickl, Roswitha;
Koch, Marcus A.

Publication type:

Article

Mechanistic Investigation of the Androgen Receptor DNA-Binding Domain and Modulation via Direct Interactions with DNA Abasic Sites: Understanding the Mechanisms Involved in Castration-Resistant Prostate Cancer.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 2, p. 1270, doi. 10.3390/ijms24021270

By:

Xu, Shangze;
Kondal, Matthew D.;
Ahmad, Ayaz;
Zhu, Ruidi;
Fan, Lanyu;
Zaborniak, Piotr;
Madden, Katrina S.;
de Souza, João V.;
Bronowska, Agnieszka K.

Publication type:

Article