Works matching RNA world hypothesis

Results: 197

The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)a.

Published in:

Biology Direct, 2012, v. 7, n. 1, p. 23, doi. 10.1186/1745-6150-7-23

By:

Bernhardt, Harold S.

Publication type:

Article

The Old and New RNA World.

Published in:

Acta Societatis Botanicorum Poloniae, 2014, v. 83, n. 4, p. 441, doi. 10.5586/asbp.2014.035

By:

Szweykowska-Kulińska, Zofia

Publication type:

Article

A Hypothesis: Life Initiated from Two Genes, as Deduced from the RNA World Hypothesis and the Characteristics of Life-Like Systems.

Published in:

Life (2075-1729), 2016, v. 6, n. 3, p. 29, doi. 10.3390/life6030029

By:

Kunio Kawamura

Publication type:

Article

RNA Synthesis by in Vitro Selected Ribozymes for Recreating an RNA World.

Published in:

Life (2075-1729), 2015, v. 5, n. 1, p. 247, doi. 10.3390/life5010247

By:

Martin, Lyssa L.;
Unrau, Peter J.;
Müller, Ulrich F.

Publication type:

Article

How Amino Acids and Peptides Shaped the RNA World.

Published in:

Life (2075-1729), 2015, v. 5, n. 1, p. 230, doi. 10.3390/life5010230

By:

van der Gulik, Peter T.S.;
Speijer, Dave

Publication type:

Article

Non-coding RNA: a new frontier in regulatory biology.

Published in:

National Science Review, 2014, v. 1, n. 2, p. 190, doi. 10.1093/nsr/nwu008

By:

Xiang-Dong Fu

Publication type:

Article

Multi-agent approach to sequence structure simulation in the RNA World hypothesis.

Published in:

PLoS ONE, 2020, v. 15, n. 8, p. 1, doi. 10.1371/journal.pone.0238253

By:

Synak, Jaroslaw;
Rybarczyk, Agnieszka;
Blazewicz, Jacek

Publication type:

Article

In silico ribozyme evolution in a metabolically coupled RNA population.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0049-6

By:

Könnyu, Balázs;
Szilágyi, András;
Czárán, Tamás;
Jékely, Gáspár;
Poole, Anthony;
Mulkidjanian, Armen

Publication type:

Article

An alternative to the RNA world hypothesis.

Published in:

Trends in Evolutionary Biology, 2011, v. 3, p. 2, doi. 10.4081/eb.2011.e2

By:

Francis, Brian R.

Publication type:

Article

The Juxtaposition of Ribose Hydroxyl Groups: The Root of Biological Catalysis and the RNA World?

Published in:

Origins of Life & Evolution of the Biosphere, 2015, v. 45, n. 1/2, p. 15, doi. 10.1007/s11084-015-9403-z

By:

Bernhardt, Harold

Publication type:

Article

Autocatalytic Sets and RNA Secondary Structure.

Published in:

Journal of Molecular Evolution, 2017, v. 84, n. 4, p. 153, doi. 10.1007/s00239-017-9787-7

By:

Hordijk, Wim

Publication type:

Article

Purine Biosynthetic Intermediate-Containing Ribose-Phosphate Polymers as Evolutionary Precursors to RNA.

Published in:

Journal of Molecular Evolution, 2014, v. 79, n. 3/4, p. 91, doi. 10.1007/s00239-014-9640-1

By:

Bernhardt, Harold;
Sandwick, Roger

Publication type:

Article

Circular RNA Expression Profile of Pancreatic Ductal Adenocarcinoma Revealed by Microarray.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2016, v. 40, n. 6, p. 1334, doi. 10.1159/000453186

By:

Li, Haimin;
Hao, Xiaokun;
Wang, Huimin;
Liu, Zhengcai;
He, Yong;
Pu, Meng;
Zhang, Hongtao;
Yu, Hengchao;
Duan, Juanli;
Qu, Shibin

Publication type:

Article

meRanTK: methylated RNA analysis ToolKit.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 782, doi. 10.1093/bioinformatics/btv647

By:

Rieder, Dietmar;
Amort, Thomas;
Kugler, Elisabeth;
Lusser, Alexandra;
Trajanoski, Zlatko

Publication type:

Article

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 593, doi. 10.1093/bioinformatics/btu647

By:

Han, Bo W.;
Wang, Wei;
Zamore, Phillip D.;
Weng, Zhiping

Publication type:

Article

Improved rat genome gene prediction by integration of ESTs with RNA-Seq information.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 25, doi. 10.1093/bioinformatics/btu608

By:

Li, Liping;
Chen, Enguo;
Yang, Chun;
Zhu, Jun;
Jayaraman, Pushkala;
De Pons, Jeffrey;
Kaczorowski, Catherine C.;
Jacob, Howard J.;
Greene, Andrew S.;
Hodges, Matthew R.;
Cowley, Allen W.;
Liang, Mingyu;
Xu, Haiming;
Liu, Pengyuan;
Lu, Yan

Publication type:

Article

The RNA World: molecular cooperation at the origins of life.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 1, p. 7, doi. 10.1038/nrg3841

By:

Higgs, Paul G.;
Lehman, Niles

Publication type:

Article

RNA: New CLIP pipeline improves interactome discovery.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 1, p. 2, doi. 10.1038/nrg3877

By:

Koch, Linda

Publication type:

Article

Large-scale RNA-Seq Transcriptome Analysis of 4043 Cancers and 548 Normal Tissue Controls across 12 TCGA Cancer Types.

Published in:

Scientific Reports, 2015, p. 13413, doi. 10.1038/srep13413

By:

Peng, Li;
Bian, Xiu Wu;
Li, Di Kang;
Xu, Chuan;
Wang, Guang Ming;
Xia, Qing You;
Xiong, Qing

Publication type:

Article

Correlation of circular RNA abundance with proliferation - exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues.

Published in:

Scientific Reports, 2015, p. 8057, doi. 10.1038/srep08057

By:

Bachmayr-Heyda, Anna;
Reiner, Agnes T.;
Auer, Katharina;
Sukhbaatar, Nyamdelger;
Aust, Stefanie;
Bachleitner-Hofmann, Thomas;
Mesteri, Ildiko;
Grunt, Thomas W.;
Zeillinger, Robert;
Pils, Dietmar

Publication type:

Article

Efficient HIV-1 inhibition by a 16 nt-long RNA aptamer designed by combining in vitro selection and in silico optimisation strategies.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep06242

By:

Francisco J. Sánchez-Luque;
Stich, Michael;
Manrubia, Susanna;
Briones, Carlos;
Berzal-Herranz, Alfredo

Publication type:

Article

tRNA Core Hypothesis for the Transition from the RNA World to the RibonucleoproteinWorld.

Published in:

Life (2075-1729), 2016, v. 6, n. 2, p. 15, doi. 10.3390/life6020015

By:

de Farias, Savio T.;
Rêgo, Thais G.;
José, Marco V.

Publication type:

Article

What RNA World? Why a Peptide/RNA Partnership Merits Renewed Experimental Attention.

Published in:

Life (2075-1729), 2015, v. 5, n. 1, p. 294, doi. 10.3390/life5010294

By:

Carter Jr., Charles W.

Publication type:

Article

Genome Rearrangements Can Make and Break Small RNA Genes.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 2, p. 557, doi. 10.1093/gbe/evv009

By:

Raghavan, Rahul;
Kacharia, Fenil R.;
Millar, Jess A.;
Sislak, Christine D.;
Ochman, Howard

Publication type:

Article

LincIN, a novel NF90-binding long non-coding RNA, is overexpressed in advanced breast tumors and involved in metastasis.

Published in:

2017

By:

Zhengyu Jiang;
Slater, Carolyn M.;
Yan Zhou;
Devarajan, Karthik;
Ruth, Karen J.;
Li, Yueran;
Cai, Kathy Q.;
Daly, Mary;
Xiaowei Chen;
Jiang, Zhengyu;
Zhou, Yan;
Chen, Xiaowei

Publication type:

journal article

Case for an RNA-prion world: a hypothesis based on conformational diversity.

Published in:

Journal of Biological Physics, 2011, v. 37, n. 2, p. 185, doi. 10.1007/s10867-011-9219-7

By:

Singh, Param;
Banerji, Anirban

Publication type:

Article

RNA expression signatures and posttranscriptional regulation in diabetic nephropathy.

Published in:

Nephrology Dialysis Transplantation, 2015, v. 30, p. iv35, doi. 10.1093/ndt/gfv079

By:

Rudnicki, Michael;
Beckers, Anneleen;
Neuwirt, Hannes;
Vandesompele, Jo

Publication type:

Article

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli.

Published in:

Scientific Reports, 2015, p. 13629, doi. 10.1038/srep13629

By:

Nalpas, Nicolas C.;
Magee, David A.;
Conlon, Kevin M.;
Browne, John A.;
Healy, Claire;
McLoughlin, Kirsten E.;
Rue-Albrecht, Kévin;
McGettigan, Paul A.;
Killick, Kate E.;
Gormley, Eamonn;
Gordon, Stephen V.;
MacHugh, David E.

Publication type:

Article

Long non-coding RNA H19 regulates FOXM1 expression by competitively binding endogenous miR-42-3p in gallbladder cancer.

Published in:

Journal of Experimental & Clinical Cancer Research (17569966), 2016, v. 35, p. 1, doi. 10.1186/s13046-016-0436-6

By:

Shou-Hua Wang;
Fei Ma;
Zhao-hui Tang;
Xiao-Cai Wu;
Qiang Cai;
Ming-Di Zhang;
Ming-Zhe Weng;
Di Zhou;
Jian-Dong Wang;
Zhi-Wei Quan1

Publication type:

Article

G-quadruplexes formation in the 5’UTRs of mRNAs associated with colorectal cancer pathways.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0208363

By:

Jodoin, Rachel;
Perreault, Jean-Pierre

Publication type:

Article

Leishmania braziliensis replication protein A subunit 1: molecular modelling, protein expression and analysis of its affinity for both DNA and RNA.

Published in:

Parasites & Vectors, 2014, v. 7, n. 1, p. 454, doi. 10.1186/s13071-014-0573-8

By:

Nocua, Paola A.;
Ramirez, Cesar A.;
Barreto, George E.;
González, Janneth;
Requena, José M.;
Puerta, Concepción J.

Publication type:

Article

Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA.

Published in:

Retrovirology, 2016, v. 13, p. 1, doi. 10.1186/s12977-016-0321-6

By:

Boltz, Valerie F.;
Rausch, Jason;
Wei Shao;
Hattori, Junko;
Luke, Brian;
Maldarelli, Frank;
Mellors, John W.;
Kearney, Mary F.;
Coffin, John M.

Publication type:

Article

Changing expression profiles of long non-coding RNAs, mRNAs and circular RNAs in ethylene glycol-induced kidney calculi rats.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5052-8

By:

Cao, Yanan;
Gao, Xiaowei;
Yang, Yue;
Ye, Zhi;
Wang, E.;
Dong, Zhitao

Publication type:

Article

Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0492-5

By:

Mbandi, Stanley Kimbung;
Hesse, Uljana;
van Heusden, Peter;
Christoffels, Alan

Publication type:

Article

Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0470-y

By:

Comoglio, Federico;
Sievers, Cem;
Paro, Renato

Publication type:

Article

Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0464-9

By:

Yang Song;
Lei Hua;
Shapiro, Bruce A.;
Wang, Jason T. L.

Publication type:

Article

Reaching Back to Jump Forward: Recent Efforts towards a Systems-Level Hypothesis for an Early RNA World.

Published in:

ChemBioChem, 2015, v. 16, n. 10, p. 1411, doi. 10.1002/cbic.201500233

By:

Springsteen, Greg

Publication type:

Article

Identification of important long non-coding RNAs and highly recurrent aberrant alternative splicing events in hepatocellular carcinoma through integrative analysis of multiple RNA-Seq datasets.

Published in:

Molecular Genetics & Genomics, 2016, v. 291, n. 3, p. 1035, doi. 10.1007/s00438-015-1163-y

By:

Zhang, Lu;
Liu, Xiaoqiao;
Zhang, Xuegong;
Chen, Ronghua

Publication type:

Article

IsoDOT Detects Differential RNA-Isoform Expression/Usage With Respect to a Categorical or Continuous Covariate With High Sensitivity and Specificity.

Published in:

Journal of the American Statistical Association, 2015, v. 110, n. 511, p. 975, doi. 10.1080/01621459.2015.1040880

By:

Sun, Wei;
Liu, Yufeng;
Crowley, James J.;
Chen, Ting-Huei;
Zhou, Hua;
Chu, Haitao;
Huang, Shunping;
Kuan, Pei-Fen;
Li, Yuan;
Miller, Darla;
Shaw, Ginger;
Wu, Yichao;
Zhabotynsky, Vasyl;
McMillan, Leonard;
Zou, Fei;
Sullivan, Patrick F.;
De Villena, Fernando Pardo-Manuel

Publication type:

Article

RNA Aptamer That Specifically Binds to Mycolactone and Serves as a Diagnostic Tool for Diagnosis of Buruli Ulcer.

Published in:

PLoS Neglected Tropical Diseases, 2016, v. 10, n. 10, p. 1, doi. 10.1371/journal.pntd.0004950

By:

Sakyi, Samuel A.;
Aboagye, Samuel Yaw;
Otchere, Isaac Darko;
Liao, Albert M.;
Caltagirone, Thomas G.;
Yeboah-Manu, Dorothy

Publication type:

Article

Fractal polymer globules: A new insight on prebiological evolution.

Published in:

Geochemistry International, 2014, v. 52, n. 13, p. 1252, doi. 10.1134/S0016702914130023

By:

Avetisov, V.;
Nechaev, S.

Publication type:

Article

Fine-grained parallelism accelerating for RNA secondary structure prediction with pseudoknots based on FPGA.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 3, p. 1450008-1, doi. 10.1142/S0219720014500085

By:

Fei Xia;
Guoqing Jin

Publication type:

Article

In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p.

Published in:

Journal of Cell Biology, 2015, v. 211, n. 6, p. 1121, doi. 10.1083/jcb.201503135

By:

Smith, Carlas;
Lari, Azra;
Derrer, Carina Patrizia;
Ouwehand, Anette;
Rossouw, Ammeret;
Huisman, Maximiliaan;
Dange, Thomas;
Hopman, Mark;
Joseph, Aviva;
Zenklusen, Daniel;
Weis, Karsten;
Grunwald, David;
Montpetit, Ben

Publication type:

Article

The Kiss Switch Brings Inactive R3C Ligase Ribozyme Back to Life.

Published in:

Biology (2079-7737), 2018, v. 7, n. 1, p. 7, doi. 10.3390/biology7010007

By:

Tanizawa, Kana;
Uchida, Sayuri;
Kurihara, Eri;
Umehara, Takuya;
Tamura, Koji

Publication type:

Article

Development of a Functionally Minimized Mutant of the R3C Ligase Ribozyme Offers Insight into the Plausibility of the RNA World Hypothesis.

Published in:

Biology (2079-7737), 2014, v. 3, n. 3, p. 452, doi. 10.3390/biology3030452

By:

Kurihara, Eri;
Uchida, Sayuri;
Umehara, Takuya;
Tamura, Koji

Publication type:

Article

Characterization of a Novel RNA Virus Discovered in the Autumnal Moth Epirrita autumnata in Sweden.

Published in:

Viruses (1999-4915), 2017, v. 9, n. 8, p. 214, doi. 10.3390/v9080214

By:

de Miranda, Joachim R.;
Hedman, Harald;
Onorati, Piero;
Stephan, Jörg;
Karlberg, Olof;
Bylund, Helena;
Terenius, Olle

Publication type:

Article

Membranous Replication Factories Induced by Plus-Strand RNA Viruses.

Published in:

Viruses (1999-4915), 2014, v. 6, n. 7, p. 2826, doi. 10.3390/v6072826

By:

Romero-Brey, Inés;
Bartenschlager, Ralf

Publication type:

Article

RNA Virus Reverse Genetics and Vaccine Design.

Published in:

Viruses (1999-4915), 2014, v. 6, n. 7, p. 2531, doi. 10.3390/v6072531

By:

Stobart, Christopher C.;
Moore, Martin L.

Publication type:

Article

Long non-coding RNA expression profiles predict metastasis in lymph node-negative breast cancer independently of traditional prognostic markers.

Published in:

Breast Cancer Research, 2015, v. 17, n. 1, p. 1, doi. 10.1186/s13058-015-0557-4

By:

Sørensen, Kristina P.;
Thomassen, Mads;
Qihua Tan;
Bak, Martin;
Cold, Søren;
Burton, Mark;
Larsen, Martin J.;
Kruse, Torben A.

Publication type:

Article

Efficient extraction of small and large RNAs in bacteria for excellent total RNA sequencing and comprehensive transcriptome analysis.

Published in:

BMC Research Notes, 2015, v. 8, p. 1, doi. 10.1186/s13104-015-1726-3

By:

Heera, Rajandas;
Sivachandran, Parimannan;
Chinni, Suresh V.;
Mason, Joanne;
Croft, Larry;
Ravichandran, Manickam;
Lee Su Yin

Publication type:

Article