Works matching DE "ALTERNATIVE RNA splicing"

Results: 2423

Multi-omics identify ribosome related causal genes methylation, splicing, and expression in prostate cancer.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02584-2

By:

Wei, Chengcheng;
He, Jingke;
Li, Yunfan;
Luo, Yu;
Song, Liangdong;
Han, Kun;
Zhang, Jindong;
Su, Shuai;
Wang, Delin

Publication type:

Article

SF3a1: A Novel Potential Tumor Biomarker or Therapeutic Target.

Published in:

Journal of Cancer, 2025, v. 16, n. 7, p. 2353, doi. 10.7150/jca.103209

By:

Xueqian Shuai;
Yaoqi Sun;
Shupeng Liu;
Zhongping Cheng

Publication type:

Article

Alternative Splicing of BnABF4L Mediates Response to Abiotic Stresses in Rapeseed (Brassica napus L.).

Published in:

Biotechnology for Biofuels & Bioproducts, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13068-025-02645-2

By:

Zhu, Ruijia;
Yue, Chu;
Wu, Shifan;
Wu, Mingting;
Xu, Ziyue;
Liu, Xiaoqun;
Wang, Rui;
Wang, Maolin

Publication type:

Article

Expression and prognostic value of estrogen-related receptor β alternative splicing isoforms in esophageal squamous cell carcinoma.

Published in:

European Journal of Medical Research, 2025, v. 30, n. 1, p. 1, doi. 10.1186/s40001-025-02638-9

By:

Jiang, Kai-Yuan;
Wan, Jia-Xin;
Li, Hong-Yun;
Chen, Wei-Yang;
Shen, Chun-Mei;
Guo, Ke-Xuan;
Zheng, Xiang-Yun;
Wen, Hong-Ying;
Tian, Dong

Publication type:

Article

Retroelement co-option disrupts the cancer transcriptional programme.

Published in:

Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01479-9

By:

Loong, Jane;
Thompson, Rachael;
Hall, Callum;
Doglio, Laura;
Pape, Judith;
Plowman, Tobias;
Kassiotis, George

Publication type:

Article

Comprehensive visceral transcriptome profiling of three pig breeds along altitudinal gradients in Yunnan.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05070-0

By:

Huo, Jinlong;
Liu, Zhipeng;
Zhang, Xia;
Li, Changyao;
Xiang, Decai;
Fu, Guowen;
Lin, Wan;
Wu, Lingxiang;
Gong, Shaorong;
Zhao, Jiading;
Wang, Zhen;
Wang, Xiaohong;
Xiao, Zhiping;
Hao, Fanfan;
Ren, Yue;
Sun, Yu H.;
Zhao, Guiying

Publication type:

Article

RBM39 shapes innate immunity by controlling the expression of key factors of the interferon response.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1568056

By:

Li, Teng-Feng;
Rothhaar, Paul;
Lang, Arthur;
Grünvogel, Oliver;
Colasanti, Ombretta;
Ugarte, Santa Mariela Olivera;
Traut, Jannik;
Piras, Antonio;
Acosta-Rivero, Nelson;
Gonçalves Magalhães, Vladimir;
Springer, Emely;
Betz, Andreas;
Huang, Hao-En;
Park, Jeongbin;
Qiu, Ruiyue;
Gnouamozi, Gnimah Eva;
Mehnert, Ann-Kathrin;
Thi, Viet Loan Dao;
Urban, Stephan;
Muckenthaler, Martina

Publication type:

Article

A tale of two parasites: a glimpse into the RNA methylome of patient-derived Plasmodium falciparum and Plasmodium vivax isolates.

Published in:

Malaria Journal, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12936-025-05376-9

By:

Roy, Priyanka;
Gujarati, Sukriti;
Gupta, Pallavi;
Gupta, Ishaan;
Mahapatra, Tanmaya;
Gupta, Dinesh;
Kochar, Sanjay Kumar;
Kochar, Dhanpat Kumar;
Das, Ashis

Publication type:

Article

Differential Recruitment of Pre-mRNA Splicing Factors to Alternatively Spliced Transcripts In Vivo.

Published in:

PLoS Biology, 2005, v. 3, n. 10, p. 1, doi. 10.1371/journal.pbio.0030374

By:

Mabon, Stephen A;
Misteli, Tom

Publication type:

Article

Author Index Volume 21 (2023).

Published in:: Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1142/S0219720023990019
Publication type:: Article

Multi-omics data analysis reveals the biological implications of alternative splicing events in lung adenocarcinoma.

Published in:

Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 4, p. 1, doi. 10.1142/S0219720023500208

By:

Hu, Fuyan;
Chen, Bifeng;
Wang, Qing;
Yang, Zhiyuan;
Chu, Man

Publication type:

Article

DeepBtoD: Improved RNA-binding proteins prediction via integrated deep learning.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 4, p. 1, doi. 10.1142/S0219720022500068

By:

Du, XiuQuan;
Zhao, XiuJuan;
Zhang, YanPing

Publication type:

Article

Histone modifications influence skipped exons inclusion.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 1, p. -1, doi. 10.1142/S0219720017500032

By:

Hou, Yue;
Huang, Huan;
Hu, Wenqiao;
Liu, Hongde;
Sun, Xiao

Publication type:

Article

Adenine base-editing-mediated exon skipping induces gene knockout in cultured pig cells.

Published in:

Biotechnology Letters, 2022, v. 44, n. 1, p. 59, doi. 10.1007/s10529-021-03214-x

By:

Zhu, Xiang-xing;
Pan, Jia-sheng;
Lin, Tao;
Yang, Ye-cheng;
Huang, Qiu-yan;
Yang, Shuai-peng;
Qu, Zi-xiao;
Lin, Zi-sheng;
Wen, Jian-cong;
Yan, Ai-fen;
Feng, Juan;
Liu, Lian;
Zhang, Xiao-li;
Lu, Jia-hong;
Tang, Dong-sheng

Publication type:

Article

SMRT and Illumina RNA sequencing reveal the complexity of terpenoid biosynthesis in Zanthoxylum armatum.

Published in:

Tree Physiology, 2022, v. 42, n. 3, p. 664, doi. 10.1093/treephys/tpab114

By:

Liu, Xiaomeng;
Tang, Ning;
Xu, Feng;
Chen, Zexiong;
Zhang, Xian;
Ye, Jiabao;
Liao, Yongling;
Zhang, Weiwei;
Kim, Soo-Un;
Wu, Peiyin;
Cao, Zhengyan

Publication type:

Article

Regulation of a truncated isoform of AMP-activated protein kinase α (AMPKα) in response to hypoxia in the muscle of Pacific oyster Crassostrea gigas.

Published in:

Journal of Comparative Physiology B: Biochemical, Systemic & Environmental Physiology, 2013, v. 183, n. 5, p. 597, doi. 10.1007/s00360-013-0743-6

By:

Guévélou, Eric;
Huvet, Arnaud;
Sussarellu, Rossana;
Milan, Massimo;
Guo, Ximing;
Li, Li;
Zhang, Guofan;
Quillien, Virgile;
Daniel, Jean-Yves;
Quéré, Claudie;
Boudry, Pierre;
Corporeau, Charlotte

Publication type:

Article

An update on transcriptional and post-translational regulation of brain voltage-gated sodium channels.

Published in:

Amino Acids, 2016, v. 48, n. 3, p. 641, doi. 10.1007/s00726-015-2122-y

By:

Onwuli, Donatus;
Beltran-Alvarez, Pedro

Publication type:

Article

The potential oncogenic effect of tissue-specific expression of JC polyoma T antigen in digestive epithelial cells.

Published in:

Transgenic Research, 2023, v. 32, n. 4, p. 305, doi. 10.1007/s11248-023-00352-y

By:

Zheng, Hua-chuan;
Xue, Hang;
Sun, Hong-zhi;
Yun, Wen-jing;
Cui, Zheng-guo

Publication type:

Article

Expression of CD44 Isoforms in Tumor Samples and Cell Lines of Human Colorectal Cancer.

Published in:

Bulletin of Experimental Biology & Medicine, 2022, v. 173, n. 1, p. 155, doi. 10.1007/s10517-022-05512-4

By:

Novosad, V. O.;
Polikanova, I. S.;
Tonevitsky, E. A.;
Maltseva, D. V.

Publication type:

Article

β-Arrestin2 promotes docetaxel resistance of castration-resistant prostate cancer via promoting hnRNP A1-mediated PKM2 alternative splicing.

Published in:

Discover Oncology, 2023, v. 14, n. 1, p. 1, doi. 10.1007/s12672-023-00740-0

By:

Zhou, Yuhao;
Li, Fei;
Zou, Bangyu;
Zhou, Xiaofeng;
Luo, Lianmin;
Dong, Sicheng;
He, Zhiqing;
Zhang, Zhixiong;
Liao, Liqiong;
Liu, Hongxing;
Cai, Chao;
Gu, Di;
Duan, Xiaolu

Publication type:

Article

Dissection of TAF1 neuronal splicing and implications for neurodegeneration in X-linked dystonia-parkinsonism.

Published in:

Brain Communications, 2021, v. 3, n. 4, p. 1, doi. 10.1093/braincomms/fcab253

By:

Capponi, Simona;
Stöffler, Nadja;
Penney, Ellen B.;
Grütz, Karen;
Nizamuddin, Sheikh;
Vermunt, Marit W.;
Castelijns, Bas;
Fernandez-Cerado, Cara;
Legarda, G. Paul;
Velasco-Andrada, M. Salvie;
Muñoz, Edwin L.;
Ang, Mark A.;
Diesta, Cid Czarina E.;
Creyghton, Menno P.;
Klein, Christine;
Bragg, D. Cristopher;
De Rijk, Peter;
Timmers, H. T. Marc

Publication type:

Article

Overexpression and alternative splicing of the glutamate‐gated chloride channel are associated with emamectin benzoate resistance in the rice stem borer, Chilo suppressalis Walker (Lepidoptera: Crambidae).

Published in:

Pest Management Science, 2025, v. 81, n. 4, p. 2114, doi. 10.1002/ps.8610

By:

Wang, Shuai;
Qiao, Song‐Tao;
Guo, Fang‐Rui;
Xie, Yuan;
Liu, Chong;
Liu, Jin‐wei;
Zhao, Si‐Qi;
Zhou, Li‐Qi;
Yang, Feng‐Xia;
Wu, Shun‐Fan;
Bass, Chris;
Gao, Cong‐Fen

Publication type:

Article

Alternative splicing of the conserved drug‐resistant orthologue FpNcb2 is associated with its nuclear accumulation of products and full virulence of Fusarium pseudograminearum.

Published in:

Pest Management Science, 2024, v. 80, n. 10, p. 4993, doi. 10.1002/ps.8219

By:

Zhao, Peiyi;
Peng, Mengya;
Zhang, Shiyu;
Dong, Zaifang;
Liu, Min;
Xing, Xiaoping;
Shi, Yan;
Li, Honglian;
Chen, Linlin

Publication type:

Article

Identification and functional analysis of the female determiner gene in the bean bug, Riptortus pedestris.

Published in:

Pest Management Science, 2024, v. 80, n. 3, p. 1240, doi. 10.1002/ps.7853

By:

Wang, Haiqiang;
Ying, Jinjun;
Mao, Zeping;
Wang, Biyun;
Ye, Zhuangxin;
Chen, Youyuan;
Chen, Jianping;
Zhang, Chuanxi;
Li, Junmin;
Zhuo, Jichong

Publication type:

Article

Functional diversity of voltage‐gated sodium channel in Drosophila suzukii (Matsumura).

Published in:

Pest Management Science, 2024, v. 80, n. 2, p. 592, doi. 10.1002/ps.7786

By:

Yuan, Linlin;
Zhang, Kun;
Wang, Zhenglei;
Xian, Limin;
Liu, Kaiyang;
Wu, Shaoying

Publication type:

Article

The cys‐loop ligand‐gated ion channel gene superfamilies of the cockroaches Blattella germanica and Periplaneta americana.

Published in:

Pest Management Science, 2021, v. 77, n. 8, p. 3787, doi. 10.1002/ps.6245

By:

Jones, Andrew K;
Goven, Delphine;
Froger, Josy‐Anne;
Bantz, Alexandre;
Raymond, Valerie

Publication type:

Article

Molecular characterization and functional expression of voltage‐gated sodium channel variants in Apolygus lucorum (Meyer‐Dür).

Published in:

Pest Management Science, 2020, v. 76, n. 6, p. 2095, doi. 10.1002/ps.5748

By:

Zhang, Kun;
Chen, Mengli;
Wang, Hao;
Duan, Wenbo;
Wang, Qiang;
Li, Fen;
Deng, Denghui;
Bandason, Elizabeth;
Wu, Shaoying

Publication type:

Article

Alternative splicing and expression analysis of HSF1 in diapause pupal brains in the cotton bollworm, Helicoverpa armigera.

Published in:

Pest Management Science, 2019, v. 75, n. 5, p. 1258, doi. 10.1002/ps.5238

By:

Chen, Wei;
Li, Yu‐Juan;
Wang, Hui;
Geng, Shao‐Lei;
Song, Zhe;
Cao, Jian‐Yun

Publication type:

Article

Molecular characterisation of a sodium channel gene and identification of a Phe1538 to Ile mutation in citrus red mite, Panonychus citri.

Published in:

Pest Management Science, 2015, v. 71, n. 2, p. 266, doi. 10.1002/ps.3802

By:

Ding, Tian‐Bo;
Zhong, Rui;
Jiang, Xuan‐Zhao;
Liao, Chong‐Yu;
Xia, Wen‐Kai;
Liu, Bin;
Dou, Wei;
Wang, Jin‐Jun

Publication type:

Article

Glucocorticoids regulate the expression of Srsf1 through Hdac4/Foxc1 axis to induce apoptosis of osteoblasts.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07989-x

By:

Luo, Hong;
Wang, Tao;
Xie, Zhihong;
Li, Fanchao;
Yang, Chengyou;
Dong, Wentao;
Wu, Jianhua;
Wang, Qiang;
Xu, Fengyang;
Liu, Jiong;
Zhang, Fei;
Peng, Wuxun

Publication type:

Article

Gene expression: Different ways to splice the cake.

Published in:

Nature Reviews Neuroscience, 2015, v. 16, n. 2, p. 68, doi. 10.1038/nrn3909

By:

Lewis, Sian

Publication type:

Article

Discovery and Comprehensive Characterization of Novel Circular RNAs of the Apoptosis-Related BOK Gene in Human Ovarian and Prostate Cancer Cells, Using Nanopore Sequencing.

Published in:

Non-Coding RNA, 2023, v. 9, n. 5, p. 57, doi. 10.3390/ncrna9050057

By:

Kontos, Christos K.;
Hadjichambi, Despina;
Papatsirou, Maria;
Karousi, Paraskevi;
Christodoulou, Spyridon;
Sideris, Diamantis C.;
Scorilas, Andreas

Publication type:

Article

Investigating the influence of the SIRT6 gene and alternative splicing on canine longevity: an in-depth bioinformatics analysis and experimental confirmation via NGS-based targeted sequencing.

Published in:

GeroScience, 2025, v. 47, n. 2, p. 2015, doi. 10.1007/s11357-024-01386-8

By:

Özmen, Özge;
Köklü, Gülin

Publication type:

Article

Gene and transcript expression patterns, coupled with isoform switching and long non-coding RNA dynamics in adipose tissue, underlie the longevity of Ames dwarf mice.

Published in:

GeroScience, 2025, v. 47, n. 2, p. 1923, doi. 10.1007/s11357-024-01383-x

By:

Cano-Besquet, Sebastian;
Park, Maiyon;
Berkley, Nadia;
Wong, Michelle;
Ashiqueali, Sarah;
Noureddine, Sarah;
Gesing, Adam;
Schneider, Augusto;
Mason, Jeffrey;
Masternak, Michal M.;
Dhahbi, Joseph M.

Publication type:

Article

Senescence, regulators of alternative splicing and effects of trametinib treatment in progeroid syndromes.

Published in:

GeroScience, 2024, v. 46, n. 2, p. 1861, doi. 10.1007/s11357-023-00933-z

By:

Bramwell, Laura R.;
Harries, Lorna W.

Publication type:

Article

Identification of Zinc Finger (ZnF) Genes that Undergo Tissue specific Alternative Splicing in Arabidopsis thaliana.

Published in:

Egyptian Journal of Botany, 2024, v. 64, n. 2, p. 523, doi. 10.21608/ejbo.2023.189961.2247

By:

Qulsum, Umme;
Thoufic Anam Azad, Md.;
Toshifumi Tsukahara

Publication type:

Article

黑曲霉木质纤维素降解酶基因的可变剪接分析及验证.

Published in:

Mycosystema, 2022, v. 41, n. 10, p. 1619, doi. 10.13346/j.mycosystema.220039

By:

徐轶凡;
Maria, AJMAL;
董飞宇;
张震;
林晖;
陈红歌

Publication type:

Article

Superoxide dismutase in Arabidopsis and Chlamydomonas: diversity, localization, regulation, and role.

Published in:

Plant & Soil, 2024, v. 503, n. 1/2, p. 751, doi. 10.1007/s11104-024-06618-6

By:

Shams, Mostafakamal;
Pokora, Wojciech;
Khadivi, Ali;
Aksmann, Anna

Publication type:

Article

The emerging role of nuclear receptor coactivator 4 in health and disease: a novel bridge between iron metabolism and immunity.

Published in:

Cell Death Discovery, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41420-024-02075-3

By:

Le, Yue;
Liu, Qinjie;
Yang, Yi;
Wu, Jie

Publication type:

Article

ESRP1-driven alternative splicing of CLSTN1 inhibits the metastasis of gastric cancer.

Published in:

Cell Death Discovery, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41420-023-01757-8

By:

Li, Chengguo;
Yin, Yuping;
Tao, Ruikang;
Lin, Yao;
Wang, Tao;
Shen, Qian;
Li, Runze;
Tao, Kaixiong;
Liu, Weizhen

Publication type:

Article

Differential Responses of Medicago truncatula NLA Homologs to Nutrient Deficiency and Arbuscular Mycorrhizal Symbiosis.

Published in:

Plants (2223-7747), 2023, v. 12, n. 24, p. 4129, doi. 10.3390/plants12244129

By:

Lin, Wei-Yi;
Yang, Hsin-Ni;
Hsieh, Chen-Yun;
Deng, Chen

Publication type:

Article

Alternative Splicing under Cold Stress in Paper Mulberry.

Published in:

Plants (2223-7747), 2023, v. 12, n. 23, p. 3950, doi. 10.3390/plants12233950

By:

Yu, Zhipeng;
Huang, Xia;
Wen, Shuhan;
Cao, Haijuan;
Wang, Nan;
Shen, Shihua;
Ding, Mingquan

Publication type:

Article

Regulation of Flowering Time and Other Developmental Plasticities by 3' Splicing Factor-Mediated Alternative Splicing in Arabidopsis thaliana.

Published in:

Plants (2223-7747), 2023, v. 12, n. 19, p. 3508, doi. 10.3390/plants12193508

By:

Lee, Keh Chien;
Kim, Young-Cheon;
Kim, Jeong-Kook;
Lee, Horim;
Lee, Jeong Hwan

Publication type:

Article

The Glycine-Rich RNA-Binding Protein Is a Vital Post-Transcriptional Regulator in Crops.

Published in:

Plants (2223-7747), 2023, v. 12, n. 19, p. 3504, doi. 10.3390/plants12193504

By:

Cheng, Ke;
Zhang, Chunjiao;
Lu, Yao;
Li, Jinyan;
Tang, Hui;
Ma, Liqun;
Zhu, Hongliang

Publication type:

Article

Molecular Mechanism Underlying the Sorghum sudanense (Piper) Stapf. Response to Osmotic Stress Determined via Single-Molecule Real-Time Sequencing and Next-Generation Sequencing.

Published in:

Plants (2223-7747), 2023, v. 12, n. 14, p. 2624, doi. 10.3390/plants12142624

By:

Liu, Qiuxu;
Wang, Fangyan;
Xu, Yalin;
Lin, Chaowen;
Li, Xiangyan;
Xu, Wenzhi;
Wang, Hong;
Zhu, Yongqun

Publication type:

Article

Two Arabidopsis Splicing Factors, U2AF65a and U2AF65b, Differentially Control Flowering Time by Modulating the Expression or Alternative Splicing of a Subset of FLC Upstream Regulators.

Published in:

Plants (2223-7747), 2023, v. 12, n. 8, p. 1655, doi. 10.3390/plants12081655

By:

Lee, Hee Tae;
Park, Hyo-Young;
Lee, Keh Chien;
Lee, Jeong Hwan;
Kim, Jeong-Kook

Publication type:

Article

Illumina RNA and SMRT Sequencing Reveals the Mechanism of Uptake and Transformation of Selenium Nanoparticles in Soybean Seedlings.

Published in:

Plants (2223-7747), 2023, v. 12, n. 4, p. 789, doi. 10.3390/plants12040789

By:

Xiong, Yuzhou;
Xiang, Xumin;
Xiao, Chunmei;
Zhang, Na;
Cheng, Hua;
Rao, Shen;
Cheng, Shuiyuan;
Li, Li

Publication type:

Article

Physiological and Full-Length Transcriptome Analyses Reveal the Dwarfing Regulation in Trifoliate Orange (Poncirus trifoliata L.).

Published in:

Plants (2223-7747), 2023, v. 12, n. 2, p. 271, doi. 10.3390/plants12020271

By:

Gu, Qingqing;
Wei, Qingjiang;
Hu, Yongwei;
Chen, Mengru;
Chen, Ziwen;
Zheng, Shuang;
Ma, Qiaoli;
Luo, Zhengrong

Publication type:

Article

Time Course RNA-seq Reveals Soybean Responses against Root-Lesion Nematode and Resistance Players.

Published in:

Plants (2223-7747), 2022, v. 11, n. 21, p. 2983, doi. 10.3390/plants11212983

By:

Lopes-Caitar, Valéria Stefania;
Nomura, Rafael Bruno Guayato;
Hishinuma-Silva, Suellen Mika;
de Carvalho, Mayra Costa da Cruz Gallo;
Abdelnoor, Ricardo Vilela;
Dias, Waldir Pereira;
Marcelino-Guimarães, Francismar Corrêa

Publication type:

Article

Transcriptome and Proteome Co-Profiling Offers an Understanding of Pre-Harvest Sprouting (PHS) Molecular Mechanisms in Wheat (Triticum aestivum).

Published in:

Plants (2223-7747), 2022, v. 11, n. 21, p. 2807, doi. 10.3390/plants11212807

By:

Park, Sang Yong;
Jung, Woo Joo;
Bang, Geul;
Hwang, Heeyoun;
Kim, Jae Yoon

Publication type:

Article