Works matching IS 08873585 AND DT 2011 AND VI 79 AND IP 6

Results: 30

A comparison of the dynamics of pantothenate synthetase from M. tuberculosis and E. coli: Computational studies.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1715, doi. 10.1002/prot.22994

By:

Tan, Yaw Sing;
Fuentes, Gloria;
Verma, Chandra

Publication type:

Article

Molecular dynamics simulations reveal structural coordination of Ffh-FtsY heterodimer toward GTPase activation.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1774, doi. 10.1002/prot.23000

By:

Yang, Ming-Jun;
Zhang, Xin

Publication type:

Article

Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1868, doi. 10.1002/prot.23011

By:

Hijikata, Atsushi;
Yura, Kei;
Noguti, Tosiyuki;
Go, Mitiko

Publication type:

Article

X-ray, ESR, and quantum mechanics studies unravel a spin well in the cofactor-less urate oxidase.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1964, doi. 10.1002/prot.23022

By:

Gabison, Laure;
Chopard, Claude;
Colloc'h, Nathalie;
Peyrot, Fabienne;
Castro, Bertrand;
Hajji, Mohamed El;
Altarsha, Muhannad;
Monard, Gerald;
Chiadmi, Mohamed;
Prangé, Thierry

Publication type:

Article

Thermal and acid denaturation of bovine lens α-crystallin.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1747, doi. 10.1002/prot.22998

By:

Rasmussen, Tue;
van de Weert, Marco;
Jiskoot, Wim;
Kasimova, Marina R.

Publication type:

Article

Possible ligand release pathway of dipeptidyl peptidase IV investigated by molecular dynamics simulations.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1800, doi. 10.1002/prot.23004

By:

Li, Cui;
Shen, Jie;
Li, Weihua;
Lu, Chunhua;
Liu, Guixia;
Tang, Yun

Publication type:

Article

Multibody coarse-grained potentials for native structure recognition and quality assessment of protein models.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1923, doi. 10.1002/prot.23015

By:

Gniewek, Pawel;
Leelananda, Sumudu P.;
Kolinski, Andrzej;
Jernigan, Robert L.;
Kloczkowski, Andrzej

Publication type:

Article

Dynamic flaps in HIV-1 protease adopt unique ordering at different stages in the catalytic cycle.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1830, doi. 10.1002/prot.23008

By:

Karthik, Suresh;
Senapati, Sanjib

Publication type:

Article

The ensemble folding kinetics of the FBP28 WW domain revealed by an all-atom Monte Carlo simulation in a knowledge-based potential.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1704, doi. 10.1002/prot.22993

By:

Xu, Jiabin;
Huang, Lei;
Shakhnovich, Eugene I.

Publication type:

Article

Swapping the domains of exoribonucleases RNase II and RNase R: Conferring upon RNase II the ability to degrade ds RNA.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1853, doi. 10.1002/prot.23010

By:

Matos, Rute Gonçalves;
Barbas, Ana;
Gómez-Puertas, Paulino;
Arraiano, Cecília Maria

Publication type:

Article

Progress in the structural prediction of G protein-coupled receptors: D.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1695, doi. 10.1002/prot.23021

By:

Obiol-Pardo, Cristian;
López, Laura;
Pastor, Manuel;
Selent, Jana

Publication type:

Article

Cold unfolding of β-hairpins: A molecular-level rationalization.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1739, doi. 10.1002/prot.22997

By:

Riccio, Angelo;
Graziano, Giuseppe

Publication type:

Article

Structural insights into piRNA recognition by the human PIWI-like 1 PAZ domain.

Published in:

Proteins, 2011, v. 79, n. 6, p. 2004, doi. 10.1002/prot.23003

By:

Zeng, Lei;
Zhang, Qiang;
Yan, Kelley;
Zhou, Ming-Ming

Publication type:

Article

Conformational dynamics of recoverin's Ca.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1910, doi. 10.1002/prot.23014

By:

Xu, Xianzhong;
Ishima, Rieko;
Ames, James B.

Publication type:

Article

Crystal structure of the unliganded retinoblastoma protein pocket domain.

Published in:

Proteins, 2011, v. 79, n. 6, p. 2010, doi. 10.1002/prot.23007

By:

Balog, Eva Rose M.;
Burke, Jason R.;
Hura, Greg L.;
Rubin, Seth M.

Publication type:

Article

Virtual screening using molecular simulations.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1940, doi. 10.1002/prot.23018

By:

Yang, Tianyi;
Wu, Johnny C.;
Yan, Chunli;
Wang, Yuanfeng;
Luo, Ray;
Gonzales, Michael B.;
Dalby, Kevin N.;
Ren, Pengyu

Publication type:

Article

Structure-based identification of catalytic residues.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1952, doi. 10.1002/prot.23020

By:

Yahalom, Ran;
Reshef, Dan;
Wiener, Ayana;
Frankel, Sagiv;
Kalisman, Nir;
Lerner, Boaz;
Keasar, Chen

Publication type:

Article

Crystal structure of a phenol-coupling P450 monooxygenase involved in teicoplanin biosynthesis.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1728, doi. 10.1002/prot.22996

By:

Li, Zhi;
Rupasinghe, Sanjeewa G.;
Schuler, Mary A.;
Nair, Satish K.

Publication type:

Article

Crystal structure of native Anopheles gambiae serpin-2, a negative regulator of melanization in mosquitoes.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1999, doi. 10.1002/prot.23002

By:

An, Chunju;
Lovell, Scott;
Kanost, Michael R.;
Battaile, Kevin P.;
Michel, Kristin

Publication type:

Article

Structure-guided forcefield optimization.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1898, doi. 10.1002/prot.23013

By:

Song, Yifan;
Tyka, Michael;
Leaver-Fay, Andrew;
Thompson, James;
Baker, David

Publication type:

Article

Probing the different chaperone activities of the bacterial HSP70-HSP40 system using a thermolabile luciferase substrate.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1991, doi. 10.1002/prot.23024

By:

Sharma, Sandeep K.;
De Los Rios, Paolo;
Goloubinoff, Pierre

Publication type:

Article

Structure of an archaeal-type phosphoenolpyruvate carboxylase sensitive to inhibition by aspartate.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1820, doi. 10.1002/prot.23006

By:

Dharmarajan, Lakshmi;
Kraszewski, Jessica L.;
Mukhopadhyay, Biswarup;
Dunten, Pete W.

Publication type:

Article

The structure of a.

Published in:

Proteins, 2011, v. 79, n. 6, p. 2015, doi. 10.1002/prot.23028

By:

Marles-Wright, Jon;
Lewis, Richard J.

Publication type:

Article

Mechanical stability of multidomain proteins and novel mechanical clamps.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1786, doi. 10.1002/prot.23001

By:

Sikora, Mateusz;
Cieplak, Marek

Publication type:

Article

Predicted structures of agonist and antagonist bound complexes of adenosine A.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1878, doi. 10.1002/prot.23012

By:

Kim, Soo-Kyung;
Riley, Lindsay;
Abrol, Ravinder;
Jacobson, Kenneth A.;
Goddard, William A.

Publication type:

Article

Conformational changes induced by ATP-hydrolysis in an ABC transporter: A molecular dynamics study of the Sav1866 exporter.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1977, doi. 10.1002/prot.23023

By:

Oliveira, A. Sofia;
Baptista, António M.;
Soares, Cláudio M.

Publication type:

Article

Protein structure prediction using a docking-based hierarchical folding scheme.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1759, doi. 10.1002/prot.22999

By:

Kifer, Ilona;
Nussinov, Ruth;
Wolfson, Haim J.

Publication type:

Article

Understanding the binding mode and function of BMS-488043 against HIV-1 viral entry.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1810, doi. 10.1002/prot.23005

By:

Da, Lin-Tai;
Quan, Jun-Min;
Wu, Yun-Dong

Publication type:

Article

A multiple-template approach to protein threading.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1930, doi. 10.1002/prot.23016

By:

Peng, Jian;
Xu, Jinbo

Publication type:

Article

Integrating the intrinsic conformational preferences of noncoded α-amino acids modified at the peptide bond into the noncoded amino acids database.

Published in:

Proteins, 2011, v. 79, n. 6, p. 1841, doi. 10.1002/prot.23009

By:

Revilla-López, Guillem;
Rodríguez-Ropero, Francisco;
Curcó, David;
Torras, Juan;
Isabel Calaza, M.;
Zanuy, David;
Jiménez, Ana I.;
Cativiela, Carlos;
Nussinov, Ruth;
Alemán, Carlos

Publication type:

Article