Works matching IS 08873585 AND DT 2011 AND VI 79 AND IP 3

Results: 27

Exploring the role of structure and dynamics in the function of chymotrypsin inhibitor 2.

Published in:

Proteins, 2011, v. 79, n. 3, p. 916, doi. 10.1002/prot.22930

By:

Whitley, Matthew J.;
Lee, Andrew L.

Publication type:

Article

Fingerprint-based structure retrieval using electron density.

Published in:

Proteins, 2011, v. 79, n. 3, p. 1002, doi. 10.1002/prot.22941

By:

Yin, Shuangye;
Dokholyan, Nikolay V.

Publication type:

Article

Protein domain assignment from the recurrence of locally similar structures.

Published in:

Proteins, 2011, v. 79, n. 3, p. 853, doi. 10.1002/prot.22923

By:

Tai, Chin-Hsien;
Sam, Vichetra;
Gibrat, Jean-Francois;
Garnier, Jean;
Munson, Peter J.;
Lee, Byungkook

Publication type:

Article

Salt bridges: Geometrically specific, designable interactions.

Published in:

Proteins, 2011, v. 79, n. 3, p. 898, doi. 10.1002/prot.22927

By:

Donald, Jason E.;
Kulp, Daniel W.;
DeGrado, William F.

Publication type:

Article

Crystal structures of a family 8 polysaccharide lyase reveal open and highly occluded substrate-binding cleft conformations.

Published in:

Proteins, 2011, v. 79, n. 3, p. 965, doi. 10.1002/prot.22938

By:

Elmabrouk, Zainab H.;
Vincent, Florence;
Zhang, Meng;
Smith, Nicola L.;
Turkenburg, Johan P.;
Charnock, Simon J.;
Black, Gary W.;
Taylor, Edward J.

Publication type:

Article

Remeasuring HEWL pK.

Published in:

Proteins, 2011, v. 79, n. 3, p. 685, doi. 10.1002/prot.22886

By:

Webb, Helen;
Tynan-Connolly, Barbara Mary;
Lee, Gregory M.;
Farrell, Damien;
O'Meara, Fergal;
Søndergaard, Chresten R.;
Teilum, Kaare;
Hewage, Chandralal;
McIntosh, Lawrence P.;
Nielsen, Jens Erik

Publication type:

Article

Molecular dynamics simulation of β.

Published in:

Proteins, 2011, v. 79, n. 3, p. 986, doi. 10.1002/prot.22940

By:

Fogolari, Federico;
Corazza, Alessandra;
Varini, Nicola;
Rotter, Matteo;
Gumral, Devrim;
Codutti, Luca;
Rennella, Enrico;
Viglino, Paolo;
Bellotti, Vittorio;
Esposito, Gennaro

Publication type:

Article

Predicting protein flexibility through the prediction of local structures.

Published in:

Proteins, 2011, v. 79, n. 3, p. 839, doi. 10.1002/prot.22922

By:

Bornot, Aurélie;
Etchebest, Catherine;
de Brevern, Alexandre G.

Publication type:

Article

Predicting kinetic constants of protein-protein interactions based on structural properties.

Published in:

Proteins, 2011, v. 79, n. 3, p. 720, doi. 10.1002/prot.22904

By:

Bai, Hongjun;
Yang, Kun;
Yu, Daqi;
Zhang, Changsheng;
Chen, Fangjin;
Lai, Luhua

Publication type:

Article

Solution structures of chicken parvalbumin 3 in the Ca.

Published in:

Proteins, 2011, v. 79, n. 3, p. 752, doi. 10.1002/prot.22915

By:

Henzl, Michael T.;
Tanner, John J.;
Tan, Anmin

Publication type:

Article

Prediction of protein binding regions.

Published in:

Proteins, 2011, v. 79, n. 3, p. 888, doi. 10.1002/prot.22926

By:

Chennamsetty, Naresh;
Voynov, Vladimir;
Kayser, Veysel;
Helk, Bernhard;
Trout, Bernhardt L.

Publication type:

Article

Structures of parasitic CDPK domains point to a common mechanism of activation.

Published in:

Proteins, 2011, v. 79, n. 3, p. 803, doi. 10.1002/prot.22919

By:

Wernimont, Amy K.;
Amani, Merhnaz;
Qiu, Wei;
Pizarro, Juan C.;
Artz, Jennifer D.;
Lin, Yu-Hui;
Lew, Jocelyn;
Hutchinson, Ashley;
Hui, Raymond

Publication type:

Article

Role of conformational sampling in computing mutation-induced changes in protein structure and stability.

Published in:

Proteins, 2011, v. 79, n. 3, p. 830, doi. 10.1002/prot.22921

By:

Kellogg, Elizabeth H.;
Leaver-Fay, Andrew;
Baker, David

Publication type:

Article

Application of long-range order to predict unfolding rates of two-state proteins.

Published in:

Proteins, 2011, v. 79, n. 3, p. 880, doi. 10.1002/prot.22925

By:

Harihar, B.;
Selvaraj, S.

Publication type:

Article

Analysis of the peroxiredoxin family: Using active-site structure and sequence information for global classification and residue analysis.

Published in:

Proteins, 2011, v. 79, n. 3, p. 947, doi. 10.1002/prot.22936

By:

Nelson, Kimberly J.;
Knutson, Stacy T.;
Soito, Laura;
Klomsiri, Chananat;
Poole, Leslie B.;
Fetrow, Jacquelyn S.

Publication type:

Article

Simplified modeling approach suggests structural mechanisms for constitutive activation of the C5a receptor.

Published in:

Proteins, 2011, v. 79, n. 3, p. 787, doi. 10.1002/prot.22918

By:

Nikiforovich, Gregory V.;
Marshall, Garland R.;
Baranski, Thomas J.

Publication type:

Article

Crystal structure of toll-like receptor 2-activating lipoprotein IIpA from Vibrio vulnificus.

Published in:

Proteins, 2011, v. 79, n. 3, p. 1020, doi. 10.1002/prot.22929

By:

Yu, Sangheon;
Lee, Na Yeon;
Park, Soon-Jung;
Rhee, Sangkee

Publication type:

Article

Effects of somatic mutations on CDR loop flexibility during affinity maturation.

Published in:

Proteins, 2011, v. 79, n. 3, p. 821, doi. 10.1002/prot.22920

By:

Wong, Sergio E.;
Sellers, Ben D.;
Jacobson, Matthew P.

Publication type:

Article

In silico modeling of pH-optimum of protein-protein binding.

Published in:

Proteins, 2011, v. 79, n. 3, p. 925, doi. 10.1002/prot.22931

By:

Mitra, Rooplekha C.;
Zhang, Zhe;
Alexov, Emil

Publication type:

Article

FINDSITE-metal: Integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level.

Published in:

Proteins, 2011, v. 79, n. 3, p. 735, doi. 10.1002/prot.22913

By:

Brylinski, Michal;
Skolnick, Jeffrey

Publication type:

Article

The structure of the ends of α-helices in globular proteins: Effect of additional hydrogen bonds and implications for helix formation.

Published in:

Proteins, 2011, v. 79, n. 3, p. 1010, doi. 10.1002/prot.22942

By:

Leader, David P.;
Milner-White, E. James

Publication type:

Article

The effects of the L29F mutation on the ligand migration kinetics in crystallized myoglobin as revealed by molecular dynamics simulations.

Published in:

Proteins, 2011, v. 79, n. 3, p. 867, doi. 10.1002/prot.22924

By:

Anselmi, Massimiliano;
Di Nola, Alfredo;
Amadei, Andrea

Publication type:

Article

Kinetics, in silico docking, molecular dynamics, and MM-GBSA binding studies on prototype indirubins, KT5720, and staurosporine as phosphorylase kinase ATP-binding site inhibitors: The role of water molecules examined.

Published in:

Proteins, 2011, v. 79, n. 3, p. 703, doi. 10.1002/prot.22890

By:

Hayes, Joseph M.;
Skamnaki, Vicky T.;
Archontis, Georgios;
Lamprakis, Christos;
Sarrou, Josephine;
Bischler, Nicolas;
Skaltsounis, Alexios-Leandros;
Zographos, Spyros E.;
Oikonomakos, Nikos G.

Publication type:

Article

The α-sheet: A missing-in-action secondary structure?

Published in:

Proteins, 2011, v. 79, n. 3, p. 937, doi. 10.1002/prot.22935

By:

Babin, Volodymyr;
Roland, Christopher;
Sagui, Celeste

Publication type:

Article

Recognition of β-calcineurin by the domains of calmodulin: Thermodynamic and structural evidence for distinct roles.

Published in:

Proteins, 2011, v. 79, n. 3, p. 765, doi. 10.1002/prot.22917

By:

O'Donnell, Susan E.;
Yu, Liping;
Fowler, C. Andrew;
Shea, Madeline A.

Publication type:

Article

Structural insights into a low-spin myoglobin variant with bis-histidine coordination from molecular modeling.

Published in:

Proteins, 2011, v. 79, n. 3, p. 679, doi. 10.1002/prot.22928

By:

Lin, Ying-Wu

Publication type:

Article

The mechanism of papain inhibition by peptidyl aldehydes.

Published in:

Proteins, 2011, v. 79, n. 3, p. 975, doi. 10.1002/prot.22939

By:

Shokhen, Michael;
Khazanov, Netaly;
Albeck, Amnon

Publication type:

Article