Works matching IS 08873585 AND DT 2009 AND VI 74 AND IP 4

Results: 23

Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks.

Published in:

Proteins, 2009, v. 74, n. 4, p. 857, doi. 10.1002/prot.22194

By:

Fuchs, Angelika;
Kirschner, Andreas;
Frishman, Dmitrij

Publication type:

Article

C-terminal tail derived from the neighboring subunit is critical for the activity of Thermoplasma acidophilum D-aldohexose dehydrogenase.

Published in:

Proteins, 2009, v. 74, n. 4, p. 801, doi. 10.1002/prot.22300

By:

Nishioka, Taiki;
Yasutake, Yoshiaki;
Nishiya, Yoshiaki;
Tamura, Noriko;
Tamura, Tomohiro

Publication type:

Article

Insights into the DNA cleavage mechanism of human LINE-1 retrotransposon endonuclease.

Published in:

Proteins, 2009, v. 74, n. 4, p. 917, doi. 10.1002/prot.22201

By:

Repanas, Kostas;
Fuentes, Gloria;
Cohen, Serge X.;
Bonvin, Alexandre M. J. J.;
Perrakis, Anastassis

Publication type:

Article

The selenoproteome of Clostridium sp. OhILAs: Characterization of anaerobic bacterial selenoprotein methionine sulfoxide reductase A.

Published in:

Proteins, 2009, v. 74, n. 4, p. 1008, doi. 10.1002/prot.22212

By:

Kim, Hwa-Young;
Zhang, Yan;
Lee, Byung Cheon;
Kim, Jae-Ryong;
Gladyshev, Vadim N.

Publication type:

Article

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network.

Published in:

Proteins, 2009, v. 74, n. 4, p. 847, doi. 10.1002/prot.22193

By:

Faraggi, Eshel;
Xue, Bin;
Zhou, Yaoqi

Publication type:

Article

Binding specificity of SH2 domains: Insight from free energy simulations.

Published in:

Proteins, 2009, v. 74, n. 4, p. 996, doi. 10.1002/prot.22209

By:

Gan, Wenxun;
Roux, Benoît

Publication type:

Article

MINOES: A new approach to select a representative ensemble of structures in NMR studies of (partially) unfolded states. Application to Δ25-PYP.

Published in:

Proteins, 2009, v. 74, n. 4, p. 895, doi. 10.1002/prot.22197

By:

Krzeminski, Mickaël;
Fuentes, Gloria;
Boelens, Rolf;
Bonvin, Alexandre M.J.J.

Publication type:

Article

Crystal structure of a novel archaeal AAA+ ATPase SSO1545 from Sulfolobus solfataricus.

Published in:

Proteins, 2009, v. 74, n. 4, p. 1041, doi. 10.1002/prot.22325

By:

Xu, Qingping;
Rife, Christopher L.;
Carlton, Dennis;
Miller, Mitchell D.;
Krishna, S. Sri;
Elsliger, Marc-André;
Abdubek, Polat;
Astakhova, Tamara;
Chiu, Hsiu-Ju;
Clayton, Thomas;
Duan, Lian;
Feuerhelm, Julie;
Grzechnik, Slawomir K.;
Hale, Joanna;
Han, Gye Won;
Jaroszewski, Lukasz;
Jin, Kevin K.;
Klock, Heath E.;
Knuth, Mark W.;
Kumar, Abhinav

Publication type:

Article

Correction to the article 'Comparative structure-function analysis of cytolethal distending toxins'.

Published in:

Proteins, 2009, v. 74, n. 4, p. 1050, doi. 10.1002/prot.22321

By:

Hu, Xin;
Nesic, Dragana;
Stebbins, C. Erec

Publication type:

Article

Molecular dynamics of amicyanin reveals a conserved dynamical core for blue copper proteins.

Published in:

Proteins, 2009, v. 74, n. 4, p. 961, doi. 10.1002/prot.22204

By:

Rizzuti, Bruno;
Sportelli, Luigi;
Guzzi, Rita

Publication type:

Article

Predicting drug resistance of the HIV-1 protease using molecular interaction energy components.

Published in:

Proteins, 2009, v. 74, n. 4, p. 837, doi. 10.1002/prot.22192

By:

Hou, Tingjun;
Zhang, Wei;
Wang, Jian;
Wang, Wei

Publication type:

Article

Fuzzy domains: New way of describing flexibility and interdependence of the protein domains.

Published in:

Proteins, 2009, v. 74, n. 4, p. 980, doi. 10.1002/prot.22208

By:

Yesylevskyy, Semen O.;
Kharkyanen, Valery N.

Publication type:

Article

Identification of putative, stable binding regions through flexibility analysis of HIV-1 gp120.

Published in:

Proteins, 2009, v. 74, n. 4, p. 881, doi. 10.1002/prot.22196

By:

Tan, Hepan;
Rader, A. J.

Publication type:

Article

Structural and functional analysis of a novel hormone-sensitive lipase from a metagenome library.

Published in:

Proteins, 2009, v. 74, n. 4, p. 1036, doi. 10.1002/prot.22313

By:

Nam, Ki Hyun;
Kim, Min-Young;
Kim, Soo-Jin;
Priyadarshi, Amit;
Kwon, Suk-Tae;
Koo, Bon-Sung;
Yoon, Sang-Hong;
Hwang, Kwang Yeon

Publication type:

Article

Structure-based design of a T-cell receptor leads to nearly 100-fold improvement in binding affinity for pepMHC.

Published in:

Proteins, 2009, v. 74, n. 4, p. 948, doi. 10.1002/prot.22203

By:

Haidar, Jaafar N.;
Pierce, Brian;
Yu, Yong;
Tong, Weiwei;
Li, Michael;
Weng, Zhiping

Publication type:

Article

Fragment-based local statistical potentials derived by combining an alphabet of protein local structures with secondary structures and solvent accessibilities.

Published in:

Proteins, 2009, v. 74, n. 4, p. 820, doi. 10.1002/prot.22191

By:

Li, Quan;
Zhou, Changhai;
Liu, Haiyan

Publication type:

Article

Clarifying allosteric control of flap conformations in the 1TW7 crystal structure of HIV-1 protease.

Published in:

Proteins, 2009, v. 74, n. 4, p. 872, doi. 10.1002/prot.22195

By:

Lexa, Katrina W.;
Damm, Kelly L.;
Quintero, Jerome J.;
Gestwicki, Jason E.;
Carlson, Heather A.

Publication type:

Article

Towards accurate residue-residue hydrophobic contact prediction for α helical proteins via integer linear optimization.

Published in:

Proteins, 2009, v. 74, n. 4, p. 929, doi. 10.1002/prot.22202

By:

Rajgaria, R.;
McAllister, S. R.;
Floudas, C. A.

Publication type:

Article

Identification of selectivity-determining residues in cytochrome P450 monooxygenases: A systematic analysis of the substrate recognition site 5.

Published in:

Proteins, 2009, v. 74, n. 4, p. 1028, doi. 10.1002/prot.22242

By:

Seifert, Alexander;
Pleiss, Jürgen

Publication type:

Article

Crystal structure of Ultralente-A microcrystalline insulin suspension.

Published in:

Proteins, 2009, v. 74, n. 4, p. 1018, doi. 10.1002/prot.22213

By:

Wagner, Armin;
Diez, Joachim;
Schulze-Briese, Clemens;
Schluckebier, Gerd

Publication type:

Article

The utility of molecular dynamics simulations for understanding site-directed mutagenesis of glycine residues in biotin carboxylase.

Published in:

Proteins, 2009, v. 74, n. 4, p. 808, doi. 10.1002/prot.22190

By:

Bordelon, Tee;
Nilsson Lill, Sten O.;
Waldrop, Grover L.

Publication type:

Article

Substrate directs enzyme dynamics by bridging distal sites: UDP-galactopyranose mutase.

Published in:

Proteins, 2009, v. 74, n. 4, p. 972, doi. 10.1002/prot.22206

By:

Yao, Xiaohui;
Bleile, Dustin W.;
Yuan, Yue;
Chao, Jay;
Sarathy, Karunan P.;
Sanders, David A. R.;
Pinto, B. Mario;
O'Neill, Melanie A.

Publication type:

Article

Charged single α-helix: A versatile protein structural motif.

Published in:

Proteins, 2009, v. 74, n. 4, p. 905, doi. 10.1002/prot.22183

By:

Süveges, Dániel;
Gáspári, Zoltán;
Tóth, Gábor;
Nyitray, László

Publication type:

Article