Works matching IS 08873585 AND DT 2008 AND VI 72 AND IP 3

Results: 29

Crystal structures of the Mycobacterium tuberculosis secretory antigen alanine dehydrogenase (Rv2780) in apo and ternary complex forms captures 'open' and 'closed' enzyme conformations.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1089, doi. 10.1002/prot.22101

By:

Tripathi, Sarvind Mani;
Ramachandran, Ravishankar

Publication type:

Article

Apo-parvalbumin as an intrinsically disordered protein.

Published in:

Proteins, 2008, v. 72, n. 3, p. 822, doi. 10.1002/prot.21974

By:

Permyakov, Sergei E.;
Bakunts, Anush G.;
Denesyuk, Alexander I.;
Knyazeva, Ekaterina L.;
Uversky, Vladimir N.;
Permyakov, Eugene A.

Publication type:

Article

Compact dimension of denatured states of staphylococcal nuclease.

Published in:

Proteins, 2008, v. 72, n. 3, p. 901, doi. 10.1002/prot.21985

By:

Chow, C.-Y.;
Wu, Ming-Chya;
Fang, Huey-Jen;
Hu, Chin-Kun;
Chen, Hueih-Min;
Tsong, Tian-Yow

Publication type:

Article

Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutants.

Published in:

Proteins, 2008, v. 72, n. 3, p. 837, doi. 10.1002/prot.21978

By:

Onitsuka, Masayoshi;
Kamikubo, Hironari;
Yamazaki, Yoichi;
Kataoka, Mikio

Publication type:

Article

An integrated approach to inferring gene-disease associations in humans.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1030, doi. 10.1002/prot.21989

By:

Radivojac, Predrag;
Peng, Kang;
Clark, Wyatt T.;
Peters, Brandon J.;
Mohan, Amrita;
Boyle, Sean M.;
Mooney, Sean D.

Publication type:

Article

Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1071, doi. 10.1002/prot.22093

By:

Li, Dan;
Liu, Cong;
Liang, Yu-He;
Li, Lan-Fen;
Su, Xiao-Dong

Publication type:

Article

Insights into the role of oligomeric state on the biological activities of crotoxin: Crystal structure of a tetrameric phospholipase A2 formed by two isoforms of crotoxin B from Crotalus durissus terrificus venom.

Published in:

Proteins, 2008, v. 72, n. 3, p. 883, doi. 10.1002/prot.21980

By:

Marchi-Salvador, Daniela P.;
Corrêa, Luiz C.;
Magro, Angelo J.;
Oliveira, Clayton Z.;
Soares, Andreimar M.;
Fontes, Marcos R. M.

Publication type:

Article

Mycobacterium tuberculosis isocitrate lyase (MtbIcl): Role of divalent cations in modulation of functional and structural properties.

Published in:

Proteins, 2008, v. 72, n. 3, p. 892, doi. 10.1002/prot.21984

By:

Kumar, Ranjeet;
Bhakuni, Vinod

Publication type:

Article

Prediction of interaction sites from apo 3D structures when the holo conformation is different.

Published in:

Proteins, 2008, v. 72, n. 3, p. 980, doi. 10.1002/prot.21995

By:

Murga, Leonel F.;
Ondrechen, Mary Jo;
Ringe, Dagmar

Publication type:

Article

All-atom replica exchange molecular simulation of protein BBL.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1038, doi. 10.1002/prot.22001

By:

Zhang, Jian;
Li, Wenfei;
Wang, Jun;
Qin, Meng;
Wang, Wei

Publication type:

Article

Induced fit in liver X receptor beta: A molecular dynamics-based investigation.

Published in:

Proteins, 2008, v. 72, n. 3, p. 873, doi. 10.1002/prot.21977

By:

Beautrait, Alexandre;
Karaboga, Arnaud S.;
Souchet, Michel;
Maigret, Bernard

Publication type:

Article

Structural properties of the human respiratory syncytial virus P protein: Evidence for an elongated homotetrameric molecule that is the smallest orthologue within the family of paramyxovirus polymerase cofactors.

Published in:

Proteins, 2008, v. 72, n. 3, p. 946, doi. 10.1002/prot.21988

By:

Llorente, María T.;
Taylor, Ian A.;
López-Viñas, Eduardo;
Gomez-Puertas, Paulino;
Calder, Lesley J.;
García-Barreno, Blanca;
Melero, José A.

Publication type:

Article

NMR structure and dynamics of human ephrin-B2 ectodomain: The functionally critical C-D and G-H loops are highly dynamic in solution.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1019, doi. 10.1002/prot.21999

By:

Ran, Xiaoyuan;
Qin, Haina;
Liu, Jingxian;
Fan, Jing-Song;
Shi, Jiahai;
Song, Jianxing

Publication type:

Article

Glutathionylation-triggered conformational changes of glutaredoxin Grx1 from the yeast Saccharomyces cerevisiae.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1077, doi. 10.1002/prot.22096

By:

Yu, Jiang;
Zhang, Nan-Nan;
Yin, Pei-Dong;
Cui, Pei-Xin;
Zhou, Cong-Zhao

Publication type:

Article

Toward better refinement of comparative models: Predicting loops in inexact environments.

Published in:

Proteins, 2008, v. 72, n. 3, p. 959, doi. 10.1002/prot.21990

By:

Sellers, Benjamin D.;
Zhu, Kai;
Zhao, Suwen;
Friesner, Richard A.;
Jacobson, Matthew P.

Publication type:

Article

Analysis of the residue-residue coevolution network and the functionally important residues in proteins.

Published in:

Proteins, 2008, v. 72, n. 3, p. 863, doi. 10.1002/prot.21972

By:

Lee, Byung-Chul;
Park, Keunwan;
Kim, Dongsup

Publication type:

Article

Deriving protein dynamical properties from weighted protein contact number.

Published in:

Proteins, 2008, v. 72, n. 3, p. 929, doi. 10.1002/prot.21983

By:

Lin, Chih-Peng;
Huang, Shao-Wei;
Lai, Yan-Long;
Yen, Shih-Chung;
Shih, Chien-Hua;
Lu, Chih-Hao;
Huang, Cuen-Chao;
Hwang, Jenn-Kang

Publication type:

Article

The NMR solution structure of the artificial protein M7 matches the computationally designed model.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1104, doi. 10.1002/prot.22107

By:

Stordeur, Claudius;
Dallüge, Roman;
Birkenmeier, Olaf;
Wienk, Hans;
Rudolph, Rainer;
Lange, Christian;
Lücke, Christian

Publication type:

Article

The conserved salt bridge linking two C-terminal β/α units in homodimeric triosephosphate isomerase determines the folding rate of the monomer.

Published in:

Proteins, 2008, v. 72, n. 3, p. 972, doi. 10.1002/prot.21994

By:

Reyes-López, César A.;
González-Mondragón, Edith;
Benítez-Cardoza, Claudia G.;
Chánez-Cárdenas, María E.;
Cabrera, Nallely;
Pérez-Montfort, Ruy;
Hernández-Arana, Andrés

Publication type:

Article

A template-finding algorithm and a comprehensive benchmark for homology modeling of proteins.

Published in:

Proteins, 2008, v. 72, n. 3, p. 910, doi. 10.1002/prot.21976

By:

Vallat, Brinda Kizhakke;
Pillardy, Jaroslaw;
Elber, Ron

Publication type:

Article

Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1096, doi. 10.1002/prot.22095

By:

Ragumani, Sugadev;
Kumaran, Desigan;
Burley, Stephen K.;
Swaminathan, Subramanyam

Publication type:

Article

fRMSDPred: Predicting local RMSD between structural fragments using sequence information.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1005, doi. 10.1002/prot.21998

By:

Rangwala, Huzefa;
Karypis, George

Publication type:

Article

Predicting helix orientation for coiled-coil dimers.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1048, doi. 10.1002/prot.22118

By:

Apgar, James R.;
Gutwin, Karl N.;
Keating, Amy E.

Publication type:

Article

Crystal structure of a PduO-type ATP:cobalamin adenosyltransferase from Burkholderia thailandensis.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1066, doi. 10.1002/prot.22084

By:

Moon, Jin Ho;
Park, Ae Kyung;
Jang, Eun Hyuk;
Kim, Heenam Stanley;
Chi, Young Min

Publication type:

Article

Effect of an amyloidogenic sequence attached to yellow fluorescent protein.

Published in:

Proteins, 2008, v. 72, n. 3, p. 811, doi. 10.1002/prot.21971

By:

Hamada, Daizo;
Tsumoto, Kouhei;
Sawara, Makoto;
Tanaka, Naoki;
Nakahira, Kumiko;
Shiraki, Kentaro;
Yanagihara, Itaru

Publication type:

Article

Glutathione reductase and thioredoxin reductase at the crossroad: The structure of Schistosoma mansoni thioredoxin glutathione reductase.

Published in:

Proteins, 2008, v. 72, n. 3, p. 936, doi. 10.1002/prot.21986

By:

Angelucci, Francesco;
Miele, Adriana E.;
Boumis, Giovanna;
Dimastrogiovanni, Daniela;
Brunori, Maurizio;
Bellelli, Andrea

Publication type:

Article

Discrimination of near-native structures in protein-protein docking by testing the stability of local minima.

Published in:

Proteins, 2008, v. 72, n. 3, p. 993, doi. 10.1002/prot.21997

By:

Kozakov, Dima;
Schueler-Furman, Ora;
Vajda, Sandor

Publication type:

Article

Docking analysis of transient complexes: Interaction of ferredoxin-NADP+ reductase with ferredoxin and flavodoxin.

Published in:

Proteins, 2008, v. 72, n. 3, p. 848, doi. 10.1002/prot.21979

By:

Medina, Milagros;
Abagyan, Ruben;
Gómez-Moreno, Carlos;
Fernandez-Recio, Juan

Publication type:

Article

Crystal structure of QueC from Bacillus subtilis: An enzyme involved in preQ1 biosynthesis.

Published in:

Proteins, 2008, v. 72, n. 3, p. 1084, doi. 10.1002/prot.22098

By:

Cicmil, Nenad;
Huang, Raven H.

Publication type:

Article

Works matching IS 08873585 AND DT 2008 AND VI 72 AND IP 3

Crystal structures of the Mycobacterium tuberculosis secretory antigen alanine dehydrogenase (Rv2780) in apo and ternary complex forms captures 'open' and 'closed' enzyme conformations.

Apo-parvalbumin as an intrinsically disordered protein.

Compact dimension of denatured states of staphylococcal nuclease.

Mechanism of induced folding: Both folding before binding and binding before folding can be realized in staphylococcal nuclease mutants.

An integrated approach to inferring gene-disease associations in humans.

Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.

Insights into the role of oligomeric state on the biological activities of crotoxin: Crystal structure of a tetrameric phospholipase A<sub>2</sub> formed by two isoforms of crotoxin B from Crotalus durissus terrificus venom.

Mycobacterium tuberculosis isocitrate lyase (MtbIcl): Role of divalent cations in modulation of functional and structural properties.

Prediction of interaction sites from apo 3D structures when the holo conformation is different.

All-atom replica exchange molecular simulation of protein BBL.

Induced fit in liver X receptor beta: A molecular dynamics-based investigation.

Structural properties of the human respiratory syncytial virus P protein: Evidence for an elongated homotetrameric molecule that is the smallest orthologue within the family of paramyxovirus polymerase cofactors.

NMR structure and dynamics of human ephrin-B2 ectodomain: The functionally critical C-D and G-H loops are highly dynamic in solution.

Glutathionylation-triggered conformational changes of glutaredoxin Grx1 from the yeast Saccharomyces cerevisiae.

Toward better refinement of comparative models: Predicting loops in inexact environments.

Analysis of the residue-residue coevolution network and the functionally important residues in proteins.

Deriving protein dynamical properties from weighted protein contact number.

The NMR solution structure of the artificial protein M7 matches the computationally designed model.

The conserved salt bridge linking two C-terminal β/α units in homodimeric triosephosphate isomerase determines the folding rate of the monomer.

A template-finding algorithm and a comprehensive benchmark for homology modeling of proteins.

Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae.

fRMSDPred: Predicting local RMSD between structural fragments using sequence information.

Predicting helix orientation for coiled-coil dimers.

Crystal structure of a PduO-type ATP:cobalamin adenosyltransferase from Burkholderia thailandensis.

Effect of an amyloidogenic sequence attached to yellow fluorescent protein.

Glutathione reductase and thioredoxin reductase at the crossroad: The structure of Schistosoma mansoni thioredoxin glutathione reductase.

Discrimination of near-native structures in protein-protein docking by testing the stability of local minima.

Docking analysis of transient complexes: Interaction of ferredoxin-NADP<sup>+</sup> reductase with ferredoxin and flavodoxin.

Crystal structure of QueC from Bacillus subtilis: An enzyme involved in preQ<sub>1</sub> biosynthesis.