Works matching IS 08873585 AND DT 2007 AND VI 69 AND IP 4

Results: 24

Automatic prediction of protein interactions with large scale motion.

Published in:

Proteins, 2007, v. 69, n. 4, p. 764, doi. 10.1002/prot.21759

By:

Schneidman-Duhovny, Dina;
Nussinov, Ruth;
Wolfson, Haim J.

Publication type:

Article

The targets of CAPRI rounds 6-12.

Published in:

Proteins, 2007, v. 69, n. 4, p. 699, doi. 10.1002/prot.21689

By:

Janin, Joël

Publication type:

Article

The SKE-DOCK server and human teams based on a combined method of shape complementarity and free energy estimation.

Published in:

Proteins, 2007, v. 69, n. 4, p. 866, doi. 10.1002/prot.21772

By:

Terashi, Genki;
Takeda-Shitaka, Mayuko;
Kanou, Kazuhiko;
Iwadate, Mitsuo;
Takaya, Daisuke;
Umeyama, Hideaki

Publication type:

Article

D OCKGROUND system of databases for protein recognition studies: Unbound structures for docking.

Published in:

Proteins, 2007, v. 69, n. 4, p. 845, doi. 10.1002/prot.21714

By:

Gao, Ying;
Douguet, Dominique;
Tovchigrechko, Andrey;
Vakser, Ilya A.

Publication type:

Article

Docking and scoring protein complexes: CAPRI 3rd Edition.

Published in:

Proteins, 2007, v. 69, n. 4, p. 704, doi. 10.1002/prot.21804

By:

Lensink, Marc F.;
Méndez, Raúl;
Wodak, Shoshana J.

Publication type:

Article

A holistic approach to protein docking.

Published in:

Proteins, 2007, v. 69, n. 4, p. 743, doi. 10.1002/prot.21752

By:

Qin, Sanbo;
Zhou, Huan-Xiang

Publication type:

Article

HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets.

Published in:

Proteins, 2007, v. 69, n. 4, p. 726, doi. 10.1002/prot.21723

By:

de Vries, Sjoerd J.;
van Dijk, Aalt D. J.;
Krzeminski, Mickaël;
van Dijk, Mark;
Thureau, Aurelien;
Hsu, Victor;
Wassenaar, Tsjerk;
Bonvin, Alexandre M. J. J.

Publication type:

Article

Protein-protein docking: Progress in CAPRI rounds 6-12 using a combination of methods: The introduction of steered solvated molecular dynamics.

Published in:

Proteins, 2007, v. 69, n. 4, p. 816, doi. 10.1002/prot.21734

By:

Heifetz, Alexander;
Pal, Sandeep;
Smith, Graham R.

Publication type:

Article

Prediction and scoring of docking poses with pyDock.

Published in:

Proteins, 2007, v. 69, n. 4, p. 852, doi. 10.1002/prot.21796

By:

Grosdidier, Solène;
Pons, Carles;
Solernou, Albert;
Fernández-Recio, Juan

Publication type:

Article

A filter enhanced sampling and combinatorial scoring study for protein docking in CAPRI.

Published in:

Proteins, 2007, v. 69, n. 4, p. 859, doi. 10.1002/prot.21738

By:

Gong, Xin Qi;
Chang, Shan;
Zhang, Qing Hua;
Li, Chun Hua;
Shen, Long Zhu;
Ma, Xiao Hui;
Wang, Ming Hui;
Liu, Bin;
He, Hong Qiu;
Chen, Wei Zu;
Wang, Cun Xin

Publication type:

Article

Acidic groups docked to well defined wetted pockets at the core of the binding interface: A tale of scoring and missing protein interactions in CAPRI.

Published in:

Proteins, 2007, v. 69, n. 4, p. 786, doi. 10.1002/prot.21722

By:

Bueno, Marta;
Camacho, Carlos J.

Publication type:

Article

Docking of protein molecular surfaces with evolutionary trace analysis.

Published in:

Proteins, 2007, v. 69, n. 4, p. 832, doi. 10.1002/prot.21737

By:

Kanamori, Eiji;
Murakami, Yoichi;
Tsuchiya, Yuko;
Standley, Daron M.;
Nakamura, Haruki;
Kinoshita, Kengo

Publication type:

Article

ClusPro: Performance in CAPRI rounds 6-11 and the new server.

Published in:

Proteins, 2007, v. 69, n. 4, p. 781, doi. 10.1002/prot.21795

By:

Comeau, Stephen R.;
Kozakov, Dima;
Brenke, Ryan;
Shen, Yang;
Beglov, Dmitri;
Vajda, Sandor

Publication type:

Article

Docking with PIPER and refinement with SDU in rounds 6-11 of CAPRI.

Published in:

Proteins, 2007, v. 69, n. 4, p. 734, doi. 10.1002/prot.21754

By:

Shen, Yang;
Brenke, Ryan;
Kozakov, Dima;
Comeau, Stephen R.;
Beglov, Dmitri;
Vajda, Sandor

Publication type:

Article

Assessing the energy landscape of CAPRI targets by FunHunt.

Published in:

Proteins, 2007, v. 69, n. 4, p. 809, doi. 10.1002/prot.21736

By:

London, Nir;
Schueler-Furman, Ora

Publication type:

Article

The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.

Published in:

Proteins, 2007, v. 69, n. 4, p. 719, doi. 10.1002/prot.21747

By:

Wiehe, Kevin;
Pierce, Brian;
Tong, Wei Wei;
Hwang, Howook;
Mintseris, Julian;
Weng, Zhiping

Publication type:

Article

RosettaDock in CAPRI rounds 6-12.

Published in:

Proteins, 2007, v. 69, n. 4, p. 758, doi. 10.1002/prot.21684

By:

Wang, Chu;
Schueler-Furman, Ora;
Andre, Ingemar;
London, Nir;
Fleishman, Sarel J.;
Bradley, Philip;
Qian, Bin;
Baker, David

Publication type:

Article

From the Mediterranean coast to the shores of Lake Ontario: CAPRI's premiere on the American continent.

Published in:

Proteins, 2007, v. 69, n. 4, p. 697, doi. 10.1002/prot.21805

By:

Wodak, Shoshana J.

Publication type:

Article

Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12.

Published in:

Proteins, 2007, v. 69, n. 4, p. 793, doi. 10.1002/prot.21731

By:

Chaudhury, Sidhartha;
Sircar, Aroop;
Sivasubramanian, Arvind;
Berrondo, Monica;
Gray, Jeffrey J.

Publication type:

Article

A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming.

Published in:

Proteins, 2007, v. 69, n. 4, p. 823, doi. 10.1002/prot.21782

By:

Amini, Ata;
Shrimpton, Paul J.;
Muggleton, Stephen H.;
Sternberg, Michael J. E.

Publication type:

Article

Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility.

Published in:

Proteins, 2007, v. 69, n. 4, p. 774, doi. 10.1002/prot.21735

By:

May, Andreas;
Zacharias, Martin

Publication type:

Article

Docking without docking: ISEARCH-prediction of interactions using known interfaces.

Published in:

Proteins, 2007, v. 69, n. 4, p. 839, doi. 10.1002/prot.21746

By:

Günther, Stefan;
May, Patrick;
Hoppe, Andreas;
Frömmel, Cornelius;
Preissner, Robert

Publication type:

Article

SOFTDOCK application to protein-protein interaction benchmark and CAPRI.

Published in:

Proteins, 2007, v. 69, n. 4, p. 801, doi. 10.1002/prot.21728

By:

Li, Nan;
Sun, Zhonghua;
Jiang, Fan

Publication type:

Article

Implicit flexibility in protein docking: Cross-docking and local refinement.

Published in:

Proteins, 2007, v. 69, n. 4, p. 750, doi. 10.1002/prot.21698

By:

Król, Marcin;
Chaleil, Raphael A. G.;
Tournier, Alexander L.;
Bates, Paul A.

Publication type:

Article