Works matching IS 08873585 AND DT 2007 AND VI 67 AND IP 4

Results: 39

Hydration of a hydrophobic cavity and its functional role: A simulation study of human interleukin-1β.

Published in:

Proteins, 2007, v. 67, n. 4, p. 868, doi. 10.1002/prot.21320

By:

Somani, Sandeep;
Chng, Choon-Peng;
Verma, Chandra S.

Publication type:

Article

Exploring the conformational space of protein loops using a mean field technique with MOLS sampling.

Published in:

Proteins, 2007, v. 67, n. 4, p. 908, doi. 10.1002/prot.21333

By:

Kanagasabai, V.;
Arunachalam, J.;
Arun Prasad, P.;
Gautham, N.

Publication type:

Article

Property-based sequence representations do not adequately encode local protein folding information.

Published in:

Proteins, 2007, v. 67, n. 4, p. 785, doi. 10.1002/prot.21434

By:

Solis, A.D.;
Rackovsky, S.

Publication type:

Article

Molecular adaptation strategies to high temperature and thermal denaturation mechanism of the D-trehalose/ D-maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1002, doi. 10.1002/prot.21383

By:

Fessas, Dimitrios;
Staiano, Maria;
Barbiroli, Alberto;
Marabotti, Anna;
Schiraldi, Alberto;
Varriale, Antonio;
Rossi, Mose';
D'Auria, Sabato

Publication type:

Article

Identification of novel fragment compounds targeted against the pY pocket of v-Src SH2 by computational and NMR screening and thermodynamic evaluation.

Published in:

Proteins, 2007, v. 67, n. 4, p. 981, doi. 10.1002/prot.21369

By:

Taylor, Jonathan D.;
Gilbert, Philip J.;
Williams, Mark A.;
Pitt, William R.;
Ladbury, John E.

Publication type:

Article

Molecular simulations bring new insights into flavonoid/quercetinase interaction modes.

Published in:

Proteins, 2007, v. 67, n. 4, p. 961, doi. 10.1002/prot.21380

By:

Fiorucci, Sébastien;
Golebiowski, Jérôme;
Cabrol-Bass, Daniel;
Antonczak, Serge

Publication type:

Article

Characterization of interfacial solvent in protein complexes and contribution of wet spots to the interface description.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1087, doi. 10.1002/prot.21394

By:

Teyra, Joan;
Pisabarro, M. T.

Publication type:

Article

ZRANK: Reranking protein docking predictions with an optimized energy function.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1078, doi. 10.1002/prot.21373

By:

Pierce, Brian;
Weng, Zhiping

Publication type:

Article

Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: Application to the TCR-p-MHC complex.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1026, doi. 10.1002/prot.21395

By:

Zoete, Vincent;
Michielin, Olivier

Publication type:

Article

Toward the mechanism of dynamical couplings and translocation in hepatitis C virus NS3 helicase using elastic network model.

Published in:

Proteins, 2007, v. 67, n. 4, p. 886, doi. 10.1002/prot.21326

By:

Zheng, Wenjun;
Liao, Jung-Chi;
Brooks, Bernard R.;
Doniach, Sebastian

Publication type:

Article

Fast and reliable analysis of molecular motion using proximity relations and dimensionality reduction.

Published in:

Proteins, 2007, v. 67, n. 4, p. 897, doi. 10.1002/prot.21337

By:

Plaku, Erion;
Stamati, Hernán;
Clementi, Cecilia;
Kavraki, Lydia E.

Publication type:

Article

Insights into unbinding mechanisms upon two mutations investigated by molecular dynamics study of GSK3β-axin complex: Role of packing hydrophobic residues.

Published in:

Proteins, 2007, v. 67, n. 4, p. 941, doi. 10.1002/prot.21359

By:

Zhang, Na;
Jiang, Yongjun;
Zou, Jianwei;
Zhuang, Shulin;
Jin, Haixiao;
Yu, Qingsen

Publication type:

Article

Crystal structure of recombinant human stromal cell-derived factor-1α.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1193, doi. 10.1002/prot.21350

By:

Ryu, Eui Kyung;
Kim, Tae Gyun;
Kwon, Taek Hun;
Jung, In Duk;
Ryu, Dowook;
Park, Yeong-Min;
Kim, Junhong;
Ahn, Kyo Han;
Ban, Changill

Publication type:

Article

Solution structures, dynamics, and lipid-binding of the sterile α-motif domain of the deleted in liver cancer 2.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1154, doi. 10.1002/prot.21361

By:

Li, Hongyan;
Fung, King-Leung;
Jin, Dong-Yan;
Chung, Stephen SM;
Ching, Yick-Pang;
Ng, Irene Oi-lin;
Sze, Kong-Hung;
Ko, Ben C.B.;
Sun, Hongzhe

Publication type:

Article

Computational protocol for predicting the binding affinities of zinc containing metalloprotein-ligand complexes.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1167, doi. 10.1002/prot.21332

By:

Jain, Tarun;
Jayaram, B.

Publication type:

Article

Homology modeling and molecular dynamics simulations of the glycine receptor ligand binding domain.

Published in:

Proteins, 2007, v. 67, n. 4, p. 950, doi. 10.1002/prot.21251

By:

Speranskiy, Kirill;
Cascio, Michael;
Kurnikova, Maria

Publication type:

Article

Assay for rapid analysis of the tri-peptidase activity of LTA<sub>4</sub> hydrolase.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1113, doi. 10.1002/prot.21329

By:

Tholander, Fredrik;
Haeggström, Jesper Z.

Publication type:

Article

Attempt to simplify the amino-acid sequence of photoactive yellow protein with a set of simple rules.

Published in:

Proteins, 2007, v. 67, n. 4, p. 821, doi. 10.1002/prot.21331

By:

Shirai, Kumiko;
Yamazaki, Yoichi;
Kamikubo, Hironari;
Imamoto, Yasushi;
Kataoka, Mikio

Publication type:

Article

A computational model of the inhibition of Mycobacterium tuberculosis ATPase by a new drug candidate R207910.

Published in:

Proteins, 2007, v. 67, n. 4, p. 971, doi. 10.1002/prot.21376

By:

de Jonge, Marc R.;
Koymans, Luc H.M.;
Guillemont, Jérôme E.G.;
Koul, Anil;
Andries, Koen

Publication type:

Article

Predicting protein domain interactions from coevolution of conserved regions.

Published in:

Proteins, 2007, v. 67, n. 4, p. 811, doi. 10.1002/prot.21347

By:

Kann, Maricel G.;
Jothi, Raja;
Cherukuri, Praveen F.;
Przytycka, Teresa M.

Publication type:

Article

Site directed mutagenesis at position 193 of human trypsin 4 alters the rate of conformational change during activation: Role of local internal viscosity in protein dynamics.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1119, doi. 10.1002/prot.21398

By:

Tóth, Júlia;
Simon, Zoltán;
Medveczky, Péter;
Gombos, Linda;
Jelinek, Balázs;
Szilágyi, László;
Gráf, László;
Málnási-Csizmadia, András

Publication type:

Article

Solution structure of hypothetical protein, HP0495 (Y495_HELPY) from Helicobacter pylori.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1189, doi. 10.1002/prot.21346

By:

Seo, Min-Duk;
Park, Sung Jean;
Kim, Hyun-Jung;
Lee, Bong-Jin

Publication type:

Article

A comparative infrared spectroscopic study of glycoside hydrolases from extremophilic archaea revealed different molecular mechanisms of adaptation to high temperatures.

Published in:

Proteins, 2007, v. 67, n. 4, p. 991, doi. 10.1002/prot.21368

By:

Ausili, Alessio;
Cobucci-Ponzano, Beatrice;
Di Lauro, Barbara;
D'Avino, Rossana;
Perugino, Giuseppe;
Bertoli, Enrico;
Scirè, Andrea;
Rossi, Mosè;
Tanfani, Fabio;
Moracci, Marco

Publication type:

Article

Folding of tandem-linked domains.

Published in:

Proteins, 2007, v. 67, n. 4, p. 795, doi. 10.1002/prot.21339

By:

Raman, E. Prabhu;
Barsegov, Valeri;
Klimov, Dmitri K.

Publication type:

Article

Computational sidechain placement and protein mutagenesis with implicit solvent models.

Published in:

Proteins, 2007, v. 67, n. 4, p. 853, doi. 10.1002/prot.21379

By:

Lopes, Anne;
Alexandrov, Alexey;
Bathelt, Christine;
Archontis, Georgios;
Simonson, Thomas

Publication type:

Article

Anatomy of a structural pathway for activation of the catalytic domain of Src kinase Hck.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1096, doi. 10.1002/prot.21334

By:

Banavali, Nilesh K.;
Roux, Benoît

Publication type:

Article

Human DEAD-box ATPase DDX3 shows a relaxed nucleoside substrate specificity.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1128, doi. 10.1002/prot.21433

By:

Franca, Raffaella;
Belfiore, Amalia;
Spadari, Silvio;
Maga, Giovanni

Publication type:

Article

Recognition of Cdk2 by Cdk7.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1048, doi. 10.1002/prot.21370

By:

Lolli, Graziano;
Johnson, Louise N.

Publication type:

Article

Strategies for the effective identification of remotely related sequences in multiple PSSM search approach.

Published in:

Proteins, 2007, v. 67, n. 4, p. 789, doi. 10.1002/prot.21356

By:

Gowri, V.S.;
Tina, K.G.;
Krishnadev, O.;
Srinivasan, N.

Publication type:

Article

Comprehensive statistical analysis of residues interaction specificity at protein-protein interfaces.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1060, doi. 10.1002/prot.21363

By:

Anashkina, Anastasya;
Kuznetsov, Eugene;
Esipova, Natalia;
Tumanyan, Vladimir

Publication type:

Article

High resolution structure of streptavidin in complex with a novel high affinity peptide tag mimicking the biotin binding motif.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1147, doi. 10.1002/prot.21236

By:

Perbandt, M.;
Bruns, O.;
Vallazza, M.;
Lamla, T.;
Betzel, Ch.;
Erdmann, V.A.

Publication type:

Article

Can molecular dynamics simulations provide high-resolution refinement of protein structure?

Published in:

Proteins, 2007, v. 67, n. 4, p. 922, doi. 10.1002/prot.21345

By:

Chen, Jianhan;
Brooks, Charles L.

Publication type:

Article

Cation-aromatic database.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1179, doi. 10.1002/prot.21202

By:

Reddy, A. Srinivas;
Sastry, G. Madhavi;
Sastry, G. Narahari

Publication type:

Article

Structure of the SANT domain from the Xenopus chromatin remodeling factor ISWI.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1198, doi. 10.1002/prot.21352

By:

Horton, John R.;
Elgar, Stuart J.;
Khan, Seema I.;
Zhang, Xing;
Wade, Paul A.;
Cheng, Xiaodong

Publication type:

Article

Crystal structure of an archaeal homologue of multidrug resistance repressor protein, EmrR, from hyperthermophilic archaea Sulfolobus tokodaii strain 7.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1138, doi. 10.1002/prot.21327

By:

Miyazono, Ken-ichi;
Tsujimura, Masanari;
Kawarabayasi, Yutaka;
Tanokura, Masaru

Publication type:

Article

EADock: Docking of small molecules into protein active sites with a multiobjective evolutionary optimization.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1010, doi. 10.1002/prot.21367

By:

Grosdidier, Aurélien;
Zoete, Vincent;
Michielin, Olivier

Publication type:

Article

The structural properties of magainin in water, TFE/water, and aqueous urea solutions: Molecular dynamics simulations.

Published in:

Proteins, 2007, v. 67, n. 4, p. 931, doi. 10.1002/prot.21293

By:

Mehrnejad, Faramarz;
Naderi-Manesh, Hossein;
Ranjbar, Bijan

Publication type:

Article

Amino acid sequence autocorrelation vectors and bayesian-regularized genetic neural networks for modeling protein conformational stability: Gene V protein mutants.

Published in:

Proteins, 2007, v. 67, n. 4, p. 834, doi. 10.1002/prot.21349

By:

Fernández, Leyden;
Caballero, Julio;
Abreu, José Ignacio;
Fernández, Michael

Publication type:

Article

NMR structure of hypothetical protein TA0938 from Thermoplasma acidophilum.

Published in:

Proteins, 2007, v. 67, n. 4, p. 1185, doi. 10.1002/prot.21143

By:

Monleón, Daniel;
Yee, Adelinda;
Arrowsmith, Cheryl;
Celda, Bernardo

Publication type:

Article