Works matching IS 08873585 AND DT 2007 AND VI 66 AND IP 3

Results: 25

Probabilistic alignment detects remote homology in a pair of protein sequences without homologous sequence information.

Published in:

Proteins, 2007, v. 66, n. 3, p. 655, doi. 10.1002/prot.21240

By:

Koike, Ryotaro;
Kinoshita, Kengo;
Kidera, Akinori

Publication type:

Article

Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 Å resolution.

Published in:

Proteins, 2007, v. 66, n. 3, p. 755, doi. 10.1002/prot.21222

By:

Nakamura, Akira;
Sosa, Akira;
Komori, Hirofumi;
Kita, Akiko;
Miki, Kunio

Publication type:

Article

Does tetracycline bind helix 2 of prion? An integrated spectroscopical and computational study of the interaction between the antibiotic and α helix 2 human prion protein fragments.

Published in:

Proteins, 2007, v. 66, n. 3, p. 707, doi. 10.1002/prot.21204

By:

Ronga, Luisa;
Langella, Emma;
Palladino, Pasquale;
Marasco, Daniela;
Tizzano, Barbara;
Saviano, Michele;
Pedone, Carlo;
Improta, Roberto;
Ruvo, Menotti

Publication type:

Article

Ancestral sequence evolutionary trace and crystal structure analyses of alkaline α-amylase from Bacillus sp. KSM-1378 to clarify the alkaline adaptation process of proteins.

Published in:

Proteins, 2007, v. 66, n. 3, p. 600, doi. 10.1002/prot.21255

By:

Shirai, Tsuyoshi;
Igarashi, Kazuaki;
Ozawa, Tadahiro;
Hagihara, Hiroshi;
Kobayashi, Tohru;
Ozaki, Katsuya;
Ito, Susumu

Publication type:

Article

Modeling the interaction between aldolase and the thrombospondin-related anonymous protein, a key connection of the malaria parasite invasion machinery.

Published in:

Proteins, 2007, v. 66, n. 3, p. 528, doi. 10.1002/prot.21266

By:

Buscaglia, Carlos A.;
Hol, Wim G. J.;
Nussenzweig, Victor;
Cardozo, Timothy

Publication type:

Article

Prediction-based fingerprints of protein-protein interactions.

Published in:

Proteins, 2007, v. 66, n. 3, p. 630, doi. 10.1002/prot.21248

By:

Porollo, Aleksey;
Meller, Jarosław

Publication type:

Article

A knowledge-based move set for protein folding.

Published in:

Proteins, 2007, v. 66, n. 3, p. 682, doi. 10.1002/prot.21237

By:

Chen, William W.;
Yang, Jae Shick;
Shakhnovich, Eugene I.

Publication type:

Article

Enhanced sampling of peptide and protein conformations using replica exchange simulations with a peptide backbone biasing-potential.

Published in:

Proteins, 2007, v. 66, n. 3, p. 697, doi. 10.1002/prot.21258

By:

Kannan, Srinivasaraghavan;
Zacharias, Martin

Publication type:

Article

Molecular dynamics studies of hexamers of amyloid-β peptide (16-35) and its mutants: Influence of charge states on amyloid formation.

Published in:

Proteins, 2007, v. 66, n. 3, p. 575, doi. 10.1002/prot.21232

By:

Han, Wei;
Wu, Yun-Dong

Publication type:

Article

Automatic procedure for using models of proteins in molecular replacement.

Published in:

Proteins, 2007, v. 66, n. 3, p. 689, doi. 10.1002/prot.21225

By:

Raimondo, Domenico;
Giorgetti, Alejandro;
Bosi, Stefania;
Tramontano, Anna

Publication type:

Article

Serendipitous discovery of novel bacterial methionine aminopeptidase inhibitors.

Published in:

Proteins, 2007, v. 66, n. 3, p. 538, doi. 10.1002/prot.21207

By:

Evdokimov, Artem G.;
Pokross, Matthew;
Walter, Richard L.;
Mekel, Marlene;
Barnett, Bobby L.;
Amburgey, Jack;
Seibel, William L.;
Soper, Shari J.;
Djung, Jane F.;
Fairweather, Neil;
Diven, Conrad;
Rastogi, Vinit;
Grinius, Leo;
Klanke, Charles;
Siehnel, Richard;
Twinem, Tracy;
Andrews, Ryan;
Curnow, Alan

Publication type:

Article

Learning about protein hydrogen bonding by minimizing contrastive divergence.

Published in:

Proteins, 2007, v. 66, n. 3, p. 588, doi. 10.1002/prot.21247

By:

Podtelezhnikov, Alexei A.;
Ghahramani, Zoubin;
Wild, David L.

Publication type:

Article

Crystal structure of UDP- N-acetylenolpyruvylglucosamine reductase (MurB) from Thermus caldophilus.

Published in:

Proteins, 2007, v. 66, n. 3, p. 751, doi. 10.1002/prot.21174

By:

Kim, Mun-Kyoung;
Cho, Min Kwan;
Song, Hye-Eun;
Kim, Dooil;
Park, Bo-Hyu;
Lee, Jun Hyuck;
Kang, Gil Bu;
Kim, Sung Hyun;
Im, Young Jun;
Lee, Dae-Sil;
Eom, Soo Hyun

Publication type:

Article

MUPRED: A tool for bridging the gap between template based methods and sequence profile based methods for protein secondary structure prediction.

Published in:

Proteins, 2007, v. 66, n. 3, p. 664, doi. 10.1002/prot.21177

By:

Bondugula, Rajkumar;
Xu, Dong

Publication type:

Article

Insight into the catalytic mechanism of arginine deiminase: Functional studies on the crucial sites.

Published in:

Proteins, 2007, v. 66, n. 3, p. 740, doi. 10.1002/prot.21235

By:

Wei, Yunzhou;
Zhou, Hao;
Sun, Yi;
He, Yingbo;
Luo, Yongzhang

Publication type:

Article

Structure and properties of a truely apo form of AraC dimerization domain.

Published in:

Proteins, 2007, v. 66, n. 3, p. 646, doi. 10.1002/prot.21267

By:

Weldon, John E.;
Rodgers, Michael E.;
Larkin, Christopher;
Schleif, Robert F.

Publication type:

Article

Destabilization of transthyretin by pathogenic mutations in the DE loop.

Published in:

Proteins, 2007, v. 66, n. 3, p. 716, doi. 10.1002/prot.21252

By:

Takeuchi, Makoto;
Mizuguchi, Mineyuki;
Kouno, Takahide;
Shinohara, Yoshinori;
Aizawa, Tomoyasu;
Demura, Makoto;
Mori, Yoshihiro;
Shinoda, Hiroyuki;
Kawano, Keiichi

Publication type:

Article

Genome-based identification and characterization of a putative mucin-binding protein from the surface of Streptococcus pneumoniae.

Published in:

Proteins, 2007, v. 66, n. 3, p. 547, doi. 10.1002/prot.21205

By:

Bumbaca, Daniela;
Littlejohn, James E.;
Nayakanti, Hannah;
Lucas, Alexander H.;
Rigden, Daniel J.;
Galperin, Michael Y.;
Jedrzejas, Mark J.

Publication type:

Article

Drug design for the third world: A conference report.

Published in:

Proteins, 2007, v. 66, n. 3, p. 509, doi. 10.1002/prot.21245

By:

Lattman, Eaton E.;
Hol, Wim G. J.;
Arnold, Eddy

Publication type:

Article

iGibbs: Improving Gibbs motif sampler for proteins by sequence clustering and iterative pattern sampling.

Published in:

Proteins, 2007, v. 66, n. 3, p. 671, doi. 10.1002/prot.21153

By:

Kim, Sun;
Wang, Zhiping;
Dalkilic, Mehmet

Publication type:

Article

Interaction of malaria parasite-inhibitory antibodies with the merozoite surface protein MSP1<sub>19</sub> by computational docking.

Published in:

Proteins, 2007, v. 66, n. 3, p. 513, doi. 10.1002/prot.21212

By:

Autore, Flavia;
Melchiorre, Sara;
Kleinjung, Jens;
Morgan, William D.;
Fraternali, Franca

Publication type:

Article

Trapping choline oxidase in a nonfunctional conformation by freezing at low pH.

Published in:

Proteins, 2007, v. 66, n. 3, p. 611, doi. 10.1002/prot.21238

By:

Hoang, Jane V.;
Gadda, Giovanni

Publication type:

Article

How a small change in retinal leads to G-protein activation: Initial events suggested by molecular dynamics calculations.

Published in:

Proteins, 2007, v. 66, n. 3, p. 559, doi. 10.1002/prot.21175

By:

Crozier, Paul S.;
Stevens, Mark J.;
Woolf, Thomas B.

Publication type:

Article

Structural insights into the GTPase domain of Escherichia coli MnmE protein.

Published in:

Proteins, 2007, v. 66, n. 3, p. 726, doi. 10.1002/prot.21186

By:

Monleón, Daniel;
Martínez-Vicente, Marta;
Esteve, Vicent;
Yim, Lucia;
Prado, Silvia;
Armengod, Maria-Eugenia;
Celda, Bernardo

Publication type:

Article

A topologically related singularity suggests a maximum preferred size for protein domains.

Published in:

Proteins, 2007, v. 66, n. 3, p. 621, doi. 10.1002/prot.21179

By:

Zbilut, Joseph P.;
Chua, Gek Huey;
Krishnan, Arun;
Bossa, Cecilia;
Rother, Kristian;
Webber, Charles L.;
Giuliani, Alessandro

Publication type:

Article