Works matching IS 08873585 AND DT 2006 AND VI 65 AND IP 3

Results: 24

Docking of human interleukin-15 to its specific receptor α chain: Correlation between molecular modeling and mutagenesis experimental data.

Published in:

Proteins, 2006, v. 65, n. 3, p. 623, doi. 10.1002/prot.21103

By:

Quéméner, Agnès;
Bernard, Jérôme;
Mortier, Erwan;
Plet, Ariane;
Jacques, Yannick;
Tran, Vinh

Publication type:

Article

Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles.

Published in:

Proteins, 2006, v. 65, n. 3, p. 783, doi. 10.1002/prot.21105

By:

Lin, Li-Ying;
Ching, Chung-Lun;
Chin, Ko-Hsin;
Chou, Shan-Ho;
Chan, Nei-Li

Publication type:

Article

Crystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 Å resolution reveals a new fold with a novel active site.

Published in:

Proteins, 2006, v. 65, n. 3, p. 771, doi. 10.1002/prot.20978

By:

DiDonato, Michael;
Krishna, S. Sri;
Schwarzenbacher, Robert;
McMullan, Daniel;
Agarwalla, Sanjay;
Brittain, Scott M.;
Miller, Mitchell D.;
Abdubek, Polat;
Ambing, Eileen;
Axelrod, Herbert L.;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
Deacon, Ashley M.;
Duan, Lian;
Elsliger, Marc-André;
Godzik, Adam;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric;
Haugen, Justin

Publication type:

Article

Stereochemistry of guanidine-metal interactions: Implications for L-arginine-metal interactions in protein structure and function.

Published in:

Proteins, 2006, v. 65, n. 3, p. 637, doi. 10.1002/prot.21127

By:

Di Costanzo, Luigi;
Flores, Lloyd V.;
Christianson, David W.

Publication type:

Article

Kinetic and structural properties of inorganic pyrophosphatase from the pathogenic bacterium Helicobacter pylori.

Published in:

Proteins, 2006, v. 65, n. 3, p. 670, doi. 10.1002/prot.21093

By:

Chao, Ti-Chun;
Huang, Haimei;
Tsai, Jia-Yin;
Huang, Chung-Yu;
Sun, Yuh-Ju

Publication type:

Article

Computational and experimental approaches for assessing the interactions between the model calycin β-lactoglobulin and two antibacterial fluoroquinolones.

Published in:

Proteins, 2006, v. 65, n. 3, p. 555, doi. 10.1002/prot.21109

By:

Eberini, Ivano;
Fantucci, Piercarlo;
Rocco, Alessandro Guerini;
Gianazza, Elisabetta;
Galluccio, Lara;
Maggioni, Daniela;
Ben, Ilaria Dal;
Galliano, Monica;
Mazzitello, Rosalba;
Gaiji, Noura;
Beringhelli, Tiziana

Publication type:

Article

Thermal versus mechanical unfolding of ubiquitin.

Published in:

Proteins, 2006, v. 65, n. 3, p. 759, doi. 10.1002/prot.21145

By:

Irbäck, Anders;
Mitternacht, Simon

Publication type:

Article

A novel high resolution CαCα distance dependent force field based on a high quality decoy set.

Published in:

Proteins, 2006, v. 65, n. 3, p. 726, doi. 10.1002/prot.21149

By:

Rajgaria, R.;
McAllister, S. R.;
Floudas, C. A.

Publication type:

Article

Characterization and tissue-specific expression of two lepidopteran farnesyl diphosphate synthase homologs: Implications for the biosynthesis of ethyl-substituted juvenile hormones.

Published in:

Proteins, 2006, v. 65, n. 3, p. 742, doi. 10.1002/prot.21057

By:

Cusson, Michel;
Béliveau, Catherine;
Sen, Stephanie E.;
Vandermoten, Sophie;
Rutledge, Robert G.;
Stewart, Don;
Francis, Frédéric;
Haubruge, Éric;
Rehse, Peter;
Huggins, David J.;
Dowling, Ashley P.G.;
Grant, Guy H.

Publication type:

Article

Physicochemical descriptors to discriminate protein-protein interactions in permanent and transient complexes selected by means of machine learning algorithms.

Published in:

Proteins, 2006, v. 65, n. 3, p. 607, doi. 10.1002/prot.21104

By:

Block, Peter;
Paern, Juri;
Hüllermeier, Eyke;
Sanschagrin, Paul;
Sotriffer, Christoph A.;
Klebe, Gerhard

Publication type:

Article

Specificity of molecular interactions in transient protein-protein interaction interfaces.

Published in:

Proteins, 2006, v. 65, n. 3, p. 593, doi. 10.1002/prot.21056

By:

Cho, Kyu-il;
Lee, KiYoung;
Lee, Kwang H.;
Kim, Dongsup;
Lee, Doheon

Publication type:

Article

Structural basis for the observed differential magnetic anisotropic tensorial values in calcium binding proteins.

Published in:

Proteins, 2006, v. 65, n. 3, p. 656, doi. 10.1002/prot.21121

By:

Mustafi, Sourajit M.;
Mukherjee, Sulakshana;
Chary, Kandala V. R.;
Cavallaro, Gabriele

Publication type:

Article

ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility.

Published in:

Proteins, 2006, v. 65, n. 3, p. 538, doi. 10.1002/prot.21086

By:

Meiler, Jens;
Baker, David

Publication type:

Article

Critical assessment of the automated AutoDock as a new docking tool for virtual screening.

Published in:

Proteins, 2006, v. 65, n. 3, p. 549, doi. 10.1002/prot.21183

By:

Park, Hwangseo;
Lee, Jinuk;
Lee, Sangyoub

Publication type:

Article

Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 Å resolution reveals a fold similar to the Ran-binding protein Mog1p.

Published in:

Proteins, 2006, v. 65, n. 3, p. 777, doi. 10.1002/prot.21015

By:

Xu, Qingping;
Krishna, S. Sri;
McMullan, Daniel;
Schwarzenbacher, Robert;
Miller, Mitchell D.;
Abdubek, Polat;
Agarwalla, Sanjay;
Ambing, Eileen;
Astakhova, Tamara;
Axelrod, Herbert L.;
Canaves, Jaume M.;
Carlton, Dennis;
Chiu, Hsiu-Ju;
Clayton, Thomas;
DiDonato, Michael;
Duan, Lian;
Elsliger, Marc-André;
Feuerhelm, Julie;
Grzechnik, Slawomir K.;
Hale, Joanna

Publication type:

Article

Homology modeling and molecular dynamics study of West Nile virus NS3 protease: A molecular basis for the catalytic activity increased by the NS2B cofactor.

Published in:

Proteins, 2006, v. 65, n. 3, p. 692, doi. 10.1002/prot.21129

By:

Zhou, Hong;
Singh, N. Jiten;
Kim, Kwang S.

Publication type:

Article

Structural dynamics of the mitochondrial ADP/ATP carrier revealed by molecular dynamics simulation studies.

Published in:

Proteins, 2006, v. 65, n. 3, p. 681, doi. 10.1002/prot.21102

By:

Falconi, M.;
Chillemi, G.;
Di Marino, D.;
D'Annessa, I.;
Morozzo della Rocca, B.;
Palmieri, L.;
Desideri, A.

Publication type:

Article

Prediction of EF-hand calcium-binding proteins and analysis of bacterial EF-hand proteins.

Published in:

Proteins, 2006, v. 65, n. 3, p. 643, doi. 10.1002/prot.21139

By:

Zhou, Yubin;
Yang, Wei;
Kirberger, Michael;
Lee, Hsiau-Wei;
Ayalasomayajula, Gayatri;
Yang, Jenny J.

Publication type:

Article

Structure modeling, ligand binding, and binding affinity calculation (LR-MM-PBSA) of human heparanase for inhibition and drug design.

Published in:

Proteins, 2006, v. 65, n. 3, p. 580, doi. 10.1002/prot.21065

By:

Zhou, Zhigang;
Bates, Maria;
Madura, Jeffry D.

Publication type:

Article

NMR structure of protein PA2021 from Pseudomonas aeruginosa.

Published in:

Proteins, 2006, v. 65, n. 3, p. 767, doi. 10.1002/prot.21098

By:

Lin, Yu-Chieh;
Liu, Gaohua;
Shen, Yang;
Bertonati, Claudia;
Yee, Adelinda;
Honig, Barry;
Arrowsmith, Cheryl H.;
Szyperski, Thomas

Publication type:

Article

Comparative structural analysis of a novel glutathione S-transferase (ATU5508) from Agrobacterium tumefaciens at 2.0 Å resolution.

Published in:

Proteins, 2006, v. 65, n. 3, p. 527, doi. 10.1002/prot.21130

By:

Kosloff, Mickey;
Han, Gye Won;
Krishna, S. Sri;
Schwarzenbacher, Robert;
Fasnacht, Marc;
Elsliger, Marc-André;
Abdubek, Polat;
Agarwalla, Sanjay;
Ambing, Eileen;
Astakhova, Tamara;
Axelrod, Herbert L.;
Canaves, Jaume M.;
Carlton, Dennis;
Chiu, Hsiu-Ju;
Clayton, Thomas;
DiDonato, Michael;
Duan, Lian;
Feuerhelm, Julie;
Grittini, Carina;
Grzechnik, Slawomir K.

Publication type:

Article

Molecular dynamics simulations of Hydrogenobacter thermophilus cytochrome c552: Comparisons of the wild-type protein, a b-type variant, and the apo state.

Published in:

Proteins, 2006, v. 65, n. 3, p. 702, doi. 10.1002/prot.21141

By:

Smith, Lorna J.;
Davies, Robert J.;
van Gunsteren, Wilfred F.

Publication type:

Article

Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Published in:

Proteins, 2006, v. 65, n. 3, p. 712, doi. 10.1002/prot.21123

By:

Hornak, Viktor;
Abel, Robert;
Okur, Asim;
Strockbine, Bentley;
Roitberg, Adrian;
Simmerling, Carlos

Publication type:

Article

Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures.

Published in:

Proteins, 2006, v. 65, n. 3, p. 568, doi. 10.1002/prot.21163

By:

Strömbergsson, Helena;
Kryshtafovych, Andriy;
Prusis, Peteris;
Fidelis, Krzysztof;
Wikberg, Jarl E. S.;
Komorowski, Jan;
Hvidsten, Torgeir R.

Publication type:

Article

Works matching IS 08873585 AND DT 2006 AND VI 65 AND IP 3

Docking of human interleukin-15 to its specific receptor α chain: Correlation between molecular modeling and mutagenesis experimental data.

Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles.

Crystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 Å resolution reveals a new fold with a novel active site.

Stereochemistry of guanidine-metal interactions: Implications for L-arginine-metal interactions in protein structure and function.

Kinetic and structural properties of inorganic pyrophosphatase from the pathogenic bacterium Helicobacter pylori.

Computational and experimental approaches for assessing the interactions between the model calycin β-lactoglobulin and two antibacterial fluoroquinolones.

Thermal versus mechanical unfolding of ubiquitin.

A novel high resolution C<sup>α</sup>C<sup>α</sup> distance dependent force field based on a high quality decoy set.

Characterization and tissue-specific expression of two lepidopteran farnesyl diphosphate synthase homologs: Implications for the biosynthesis of ethyl-substituted juvenile hormones.

Physicochemical descriptors to discriminate protein-protein interactions in permanent and transient complexes selected by means of machine learning algorithms.

Specificity of molecular interactions in transient protein-protein interaction interfaces.

Structural basis for the observed differential magnetic anisotropic tensorial values in calcium binding proteins.

ROSETTALIGAND: Protein-small molecule docking with full side-chain flexibility.

Critical assessment of the automated AutoDock as a new docking tool for virtual screening.

Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 Å resolution reveals a fold similar to the Ran-binding protein Mog1p.

Homology modeling and molecular dynamics study of West Nile virus NS3 protease: A molecular basis for the catalytic activity increased by the NS2B cofactor.

Structural dynamics of the mitochondrial ADP/ATP carrier revealed by molecular dynamics simulation studies.

Prediction of EF-hand calcium-binding proteins and analysis of bacterial EF-hand proteins.

Structure modeling, ligand binding, and binding affinity calculation (LR-MM-PBSA) of human heparanase for inhibition and drug design.

NMR structure of protein PA2021 from Pseudomonas aeruginosa.

Comparative structural analysis of a novel glutathione S-transferase (ATU5508) from Agrobacterium tumefaciens at 2.0 Å resolution.

Molecular dynamics simulations of Hydrogenobacter thermophilus cytochrome c<sub>552</sub>: Comparisons of the wild-type protein, a b-type variant, and the apo state.

Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures.