Works matching IS 08873585 AND DT 2006 AND VI 64 AND IP 3

Results: 30

Structural analysis of B. subtilis CcpA effector binding site.

Published in:

Proteins, 2006, v. 64, n. 3, p. 814, doi. 10.1002/prot.21001

By:

Chaptal, Vincent;
Gueguen-Chaignon, Virginie;
Poncet, Sandrine;
Lecampion, Cécile;
Meyer, Philippe;
Deutscher, Josef;
Galinier, Anne;
Nessler, Sylvie;
Moréra, Solange

Publication type:

Article

Free energy calculations show that acidic P1 variants undergo large pK<sub>a</sub> shifts upon binding to trypsin.

Published in:

Proteins, 2006, v. 64, n. 3, p. 740, doi. 10.1002/prot.20940

By:

Brandsdal, Bjørn O.;
Smalås, Arne O.;
Åqvist, Johan

Publication type:

Article

Site-directed combinatorial construction of chimaeric genes: General method for optimizing assembly of gene fragments.

Published in:

Proteins, 2006, v. 64, n. 3, p. 629, doi. 10.1002/prot.20984

By:

Saftalov, Liz;
Smith, Peter A.;
Friedman, Alan M.;
Bailey-Kellogg, Chris

Publication type:

Article

Dynamic domain threading.

Published in:

Proteins, 2006, v. 64, n. 3, p. 601, doi. 10.1002/prot.20915

By:

Taylor, William R.;
Lin, Kuang;
Klose, Daniel;
Fraternali, Franca;
Jonassen, Inge

Publication type:

Article

Solution structures of the first and fourth TSR domains of F-spondin.

Published in:

Proteins, 2006, v. 64, n. 3, p. 665, doi. 10.1002/prot.21030

By:

Pääkkönen, Kimmo;
Tossavainen, Helena;
Permi, Perttu;
Rakkolainen, Harri;
Rauvala, Heikki;
Raulo, Erkki;
Kilpeläinen, Ilkka;
Güntert, Peter

Publication type:

Article

Comment on: 'Energy landscape of a small peptide revealed by dihedral angle principal component analysis'.

Published in:

Proteins, 2006, v. 64, n. 3, p. 795, doi. 10.1002/prot.20900

By:

Hinsen, Konrad

Publication type:

Article

α-helix stabilization by alanine relative to glycine: Roles of polar and apolar solvent exposures and of backbone entropy.

Published in:

Proteins, 2006, v. 64, n. 3, p. 769, doi. 10.1002/prot.21041

By:

López-Llano, J.;
Campos, L.A.;
Sancho, J.

Publication type:

Article

Solution structure of acyl carrier protein from Nitrosomonas europaea.

Published in:

Proteins, 2006, v. 64, n. 3, p. 800, doi. 10.1002/prot.21016

By:

Srisailam, Sampath;
Lukin, Jonathan A.;
Yee, Adelinda;
Semesi, Anthony;
Arrowsmith, Cheryl H.

Publication type:

Article

Reply to the comment on 'Energy landscape of a small peptide revealed by dihedral angle principal component analysis'.

Published in:

Proteins, 2006, v. 64, n. 3, p. 798, doi. 10.1002/prot.21038

By:

Mu, Yuguang;
Nguyen, Phuong;
Stock, Gerhard

Publication type:

Article

MUSTANG: A multiple structural alignment algorithm.

Published in:

Proteins, 2006, v. 64, n. 3, p. 559, doi. 10.1002/prot.20921

By:

Konagurthu, Arun S.;
Whisstock, James C.;
Stuckey, Peter J.;
Lesk, Arthur M.

Publication type:

Article

Comment on 'Phenomenological similarities between protein denaturation and small-molecule dissolution: Insights into the mechanism driving the thermal resistance of globular proteins' (Proteins 2004;54:323-332).

Published in:

Proteins, 2006, v. 64, n. 3, p. 789, doi. 10.1002/prot.20925

By:

Graziano, Giuseppe

Publication type:

Article

Response to comment on 'Phenomenological similarities between protein denaturation and small-molecule dissolution: Insights into the mechanism driving the thermal resistance of globular proteins' (Proteins 2004;54:323-332).

Published in:

Proteins, 2006, v. 64, n. 3, p. 792, doi. 10.1002/prot.20833

By:

Ragone, Raffaele

Publication type:

Article

Detection of operons.

Published in:

Proteins, 2006, v. 64, n. 3, p. 615, doi. 10.1002/prot.21021

By:

Yan, Yongpan;
Moult, John

Publication type:

Article

Phosphorylation-induced transient intrinsic structure in the kinase-inducible domain of CREB facilitates its recognition by the KIX domain of CBP.

Published in:

Proteins, 2006, v. 64, n. 3, p. 749, doi. 10.1002/prot.21032

By:

Solt, Iván;
Magyar, Csaba;
Simon, István;
Tompa, Peter;
Fuxreiter, Monika

Publication type:

Article

3<sub>10</sub>-helices in proteins are parahelices.

Published in:

Proteins, 2006, v. 64, n. 3, p. 691, doi. 10.1002/prot.21026

By:

Enkhbayar, Purevjav;
Hikichi, Kunio;
Osaki, Mitsuru;
Kretsinger, Robert H.;
Matsushima, Norio

Publication type:

Article

Crystal structure of a putative acyl-CoA thioesterase from Xanthomonas campestris (XC229) adopts a tetrameric hotdog fold of ϵγ mode.

Published in:

Proteins, 2006, v. 64, n. 3, p. 823, doi. 10.1002/prot.21037

By:

Chin, Ko-Hsin;
Chou, Chia-Cheng;
Wang, Andrew H.-J.;
Chou, Shan-Ho

Publication type:

Article

Molecular dynamics study of onset of water gelation around the collagen triple helix.

Published in:

Proteins, 2006, v. 64, n. 3, p. 711, doi. 10.1002/prot.21019

By:

Handgraaf, Jan-Willem;
Zerbetto, Francesco

Publication type:

Article

Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 Å resolution.

Published in:

Proteins, 2006, v. 64, n. 3, p. 808, doi. 10.1002/prot.20947

By:

Xu, Qingping;
Schwarzenbacher, Robert;
Sri Krishna, S.;
McMullan, Daniel;
Agarwalla, Sanjay;
Quijano, Kevin;
Abdubek, Polat;
Ambing, Eileen;
Axelrod, Herbert;
Biorac, Tanya;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
Elsliger, Marc-André;
Grittini, Carina;
Grzechnik, Slawomir K.;
DiDonato, Michael;
Hale, Joanna;
Hampton, Eric;
Han, Gye Won;
Haugen, Justin

Publication type:

Article

Ab initio computational modeling of loops in G-protein-coupled receptors: Lessons from the crystal structure of rhodopsin.

Published in:

Proteins, 2006, v. 64, n. 3, p. 673, doi. 10.1002/prot.21022

By:

Mehler, Ernest L.;
Hassan, Sergio A.;
Kortagere, Sandhya;
Weinstein, Harel

Publication type:

Article

Chemical synthesis of mouse cripto CFC variants.

Published in:

Proteins, 2006, v. 64, n. 3, p. 779, doi. 10.1002/prot.21043

By:

Marasco, Daniela;
Saporito, Angela;
Ponticelli, Salvatore;
Chambery, Angela;
De Falco, Sandro;
Pedone, Carlo;
Minchiotti, Gabriella;
Ruvo, Menotti

Publication type:

Article

YASSPP: Better kernels and coding schemes lead to improvements in protein secondary structure prediction.

Published in:

Proteins, 2006, v. 64, n. 3, p. 575, doi. 10.1002/prot.21036

By:

Karypis, George

Publication type:

Article

Prediction of protein subcellular localization.

Published in:

Proteins, 2006, v. 64, n. 3, p. 643, doi. 10.1002/prot.21018

By:

Yu, Chin-Sheng;
Chen, Yu-Ching;
Lu, Chih-Hao;
Hwang, Jenn-Kang

Publication type:

Article

Crystal structure of fatty acid-CoA racemase from Mycobacterium tuberculosis H37Rv.

Published in:

Proteins, 2006, v. 64, n. 3, p. 817, doi. 10.1002/prot.21029

By:

Lee, Ki Seog;
Park, Seon Mi;
Rhee, Kyung-Hee;
Bang, Won-Gi;
Hwang, Kwang Yeon;
Chi, Young-Min

Publication type:

Article

Error distribution derived NOE distance restraints.

Published in:

Proteins, 2006, v. 64, n. 3, p. 652, doi. 10.1002/prot.20985

By:

Nilges, Michael;
Habeck, Michael;
O'Donoghue, Seán I.;
Rieping, Wolfgang

Publication type:

Article

Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.

Published in:

Proteins, 2006, v. 64, n. 3, p. 587, doi. 10.1002/prot.21020

By:

Tan, Yen Hock;
Huang, He;
Kihara, Daisuke

Publication type:

Article

Characterization of de novo four-helix bundles by molecular dynamics simulations.

Published in:

Proteins, 2006, v. 64, n. 3, p. 719, doi. 10.1002/prot.21031

By:

Scott, Walter R. P.;
Seo, Emily;
Huttunen, Heidi;
Wallhorn, Diana;
Sherman, John C.;
Straus, Suzana K.

Publication type:

Article

Molecular dynamics study of conformational changes in human serum albumin by binding of fatty acids.

Published in:

Proteins, 2006, v. 64, n. 3, p. 730, doi. 10.1002/prot.21053

By:

Fujiwara, Shin-ichi;
Amisaki, Takashi

Publication type:

Article

Computational model for the IGF-II/IGF2r complex that is predictive of mutational and surface plasmon resonance data.

Published in:

Proteins, 2006, v. 64, n. 3, p. 758, doi. 10.1002/prot.21035

By:

Roche, Philippe;
Brown, James;
Denley, Adam;
Forbes, Briony E.;
Wallace, John C.;
Jones, E. Yvonne;
Esnouf, Robert M.

Publication type:

Article

The planar conformation of a strained proline ring: A QM/MM study.

Published in:

Proteins, 2006, v. 64, n. 3, p. 700, doi. 10.1002/prot.21006

By:

Donnini, Serena;
Groenhof, Gerrit;
Wierenga, Rik K.;
Juffer, André H.

Publication type:

Article

Solution structure of human erythroid p55 PDZ domain.

Published in:

Proteins, 2006, v. 64, n. 3, p. 804, doi. 10.1002/prot.21028

By:

Kusunoki, Hideki;
Kohno, Toshiyuki

Publication type:

Article