Works matching IS 08873585 AND DT 2006 AND VI 64 AND IP 1

Results: 31

Specific DNA binding by the homeodomain Nkx2.5(C56S): Detection of impaired DNA or unfolded protein by isothermal titration calorimetry.

Published in:

Proteins, 2006, v. 64, n. 1, p. 13, doi. 10.1002/prot.20960

By:

Fodor, Elfrieda;
Ginsburg, Ann

Publication type:

Article

Accessibility of tobacco lipid transfer protein cavity revealed by 15N NMR relaxation studies and molecular dynamics simulations.

Published in:

Proteins, 2006, v. 64, n. 1, p. 124, doi. 10.1002/prot.20971

By:

Da Silva, Pedro;
Landon, Céline;
Beltoise, Romain;
Ponchet, Michel;
Vovelle, Françoise

Publication type:

Article

Structural characterization of Salmonella typhimurium YeaZ, an M22 O-sialoglycoprotein endopeptidase homolog.

Published in:

Proteins, 2006, v. 64, n. 1, p. 111, doi. 10.1002/prot.20982

By:

Nichols, C.E.;
Johnson, C.;
Lockyer, M.;
Charles, I.G.;
Lamb, H.K.;
Hawkins, A.R.;
Stammers, D.K.

Publication type:

Article

Unfolding transition state and intermediates of the tumor suppressor p16INK4a investigated by molecular dynamics simulations.

Published in:

Proteins, 2006, v. 64, n. 1, p. 178, doi. 10.1002/prot.20953

By:

Interlandi, Gianluca;
Settanni, Giovanni;
Caflisch, Amedeo

Publication type:

Article

Protein-protein interactions in actin-myosin binding and structural effects of R405Q mutation: A molecular dynamics study.

Published in:

Proteins, 2006, v. 64, n. 1, p. 156, doi. 10.1002/prot.20993

By:

Liu, Yuemin;
Scolari, Megan;
Im, Wonpil;
Woo, Hyung-June

Publication type:

Article

Proteins of the same fold and unrelated sequences have similar amino acid composition.

Published in:

Proteins, 2006, v. 64, n. 1, p. 275, doi. 10.1002/prot.20964

By:

Ofran, Yanay;
Margalit, Hanah

Publication type:

Article

Comparing programs for rigid-body multiple structural superposition of proteins.

Published in:

Proteins, 2006, v. 64, n. 1, p. 219, doi. 10.1002/prot.20975

By:

Hill, Anthony D.;
Reilly, Peter J.

Publication type:

Article

Global multiple-sequence alignment with repeats.

Published in:

Proteins, 2006, v. 64, n. 1, p. 263, doi. 10.1002/prot.20957

By:

Sammeth, Michael;
Heringa, Jaap

Publication type:

Article

De novo ligand design to an ensemble of protein structures.

Published in:

Proteins, 2006, v. 64, n. 1, p. 43, doi. 10.1002/prot.20928

By:

Todorov, N.P.;
Buenemann, C.L.;
Alberts, I.L.

Publication type:

Article

Computational mutagenesis studies of protein structure-function correlations.

Published in:

Proteins, 2006, v. 64, n. 1, p. 234, doi. 10.1002/prot.20968

By:

Masso, Majid;
Lu, Zhibin;
Vaisman, Iosif I.

Publication type:

Article

Assessing the acid-base and conformational properties of histidine residues in human prion protein (125-228) by means of pK a calculations and molecular dynamics simulations.

Published in:

Proteins, 2006, v. 64, n. 1, p. 167, doi. 10.1002/prot.20979

By:

Langella, Emma;
Improta, Roberto;
Crescenzi, Orlando;
Barone, Vincenzo

Publication type:

Article

Crystal structures of the complexes of a group IIA phospholipase A2 with two natural anti-inflammatory agents, anisic acid, and atropine reveal a similar mode of binding.

Published in:

Proteins, 2006, v. 64, n. 1, p. 89, doi. 10.1002/prot.20970

By:

Singh, Nagendra;
Jabeen, Talat;
Pal, Aritra;
Sharma, Sujata;
Perbandt, Markus;
Betzel, Christian;
Singh, Tej P.

Publication type:

Article

Analyzing large-scale structural change in proteins: Comparison of principal component projection and sammon mapping.

Published in:

Proteins, 2006, v. 64, n. 1, p. 210, doi. 10.1002/prot.20981

By:

Mesentean, Sidonia;
Fischer, Stefan;
Smith, Jeremy C.

Publication type:

Article

Molecular dynamics study of a calmodulin-like protein with an IQ peptide: Spontaneous refolding of the protein around the peptide.

Published in:

Proteins, 2006, v. 64, n. 1, p. 133, doi. 10.1002/prot.20956

By:

Ganoth, Assaf;
Nachliel, Esther;
Friedman, Ran;
Gutman, Menachem

Publication type:

Article

Association of calcineurin with mitochondrial proteins.

Published in:

Proteins, 2006, v. 64, n. 1, p. 28, doi. 10.1002/prot.20996

By:

Tokheim, Abigail M.;
Martin, Bruce L.

Publication type:

Article

Crystal structure of Homo sapiens thialysine Nϵ-acetyltransferase (HsSSAT2) in complex with acetyl coenzyme A.

Published in:

Proteins, 2006, v. 64, n. 1, p. 288, doi. 10.1002/prot.20967

By:

Han, Byung Woo;
Bingman, Craig A.;
Wesenberg, Gary E.;
Phillips, George N.

Publication type:

Article

Fibrous long spacing type collagen fibrils have a hierarchical internal structure.

Published in:

Proteins, 2006, v. 64, n. 1, p. 227, doi. 10.1002/prot.20949

By:

Wen, Chuck K.;
Goh, M. Cynthia

Publication type:

Article

Diffusion-collision of foldons elucidates the kinetic effects of point mutations and suggests control strategies of the folding process of helical proteins.

Published in:

Proteins, 2006, v. 64, n. 1, p. 198, doi. 10.1002/prot.20980

By:

Capriotti, Emidio;
Compiani, Mario

Publication type:

Article

Multiple molecular dynamics simulations of human p450 monooxygenase CYP2C9: The molecular basis of substrate binding and regioselectivity toward warfarin.

Published in:

Proteins, 2006, v. 64, n. 1, p. 147, doi. 10.1002/prot.20951

By:

Seifert, Alexander;
Tatzel, Stephan;
Schmid, Rolf D.;
Pleiss, Jürgen

Publication type:

Article

Predicting calcium-binding sites in proteins-A graph theory and geometry approach.

Published in:

Proteins, 2006, v. 64, n. 1, p. 34, doi. 10.1002/prot.20973

By:

Deng, Hai;
Chen, Guantao;
Yang, Wei;
Yang, Jenny J.

Publication type:

Article

Inhibition of protein-protein interactions: The discovery of druglike β-catenin inhibitors by combining virtual and biophysical screening.

Published in:

Proteins, 2006, v. 64, n. 1, p. 60, doi. 10.1002/prot.20955

By:

Trosset, Jean-Yves;
Dalvit, Claudio;
Knapp, Stefan;
Fasolini, Marina;
Veronesi, Marina;
Mantegani, Sergio;
Gianellini, Laura M.;
Catana, Cornel;
Sundström, Michael;
Stouten, Pieter F.W.;
Moll, Jürgen K.

Publication type:

Article

Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.

Published in:

Proteins, 2006, v. 64, n. 1, p. 284, doi. 10.1002/prot.20937

By:

Hattori, Motoyuki;
Mizohata, Eiichi;
Tatsuguchi, Ayako;
Shibata, Rie;
Kishishita, Seiichiro;
Murayama, Kazutaka;
Terada, Takaho;
Kuramitsu, Seiki;
Shirouzu, Mikako;
Yokoyama, Shigeyuki

Publication type:

Article

Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins.

Published in:

Proteins, 2006, v. 64, n. 1, p. 19, doi. 10.1002/prot.20977

By:

Kuznetsov, Igor B.;
Gou, Zhenkun;
Li, Run;
Hwang, Seungwoo

Publication type:

Article

Structure of a glutathione conjugate bound to the active site of aldose reductase.

Published in:

Proteins, 2006, v. 64, n. 1, p. 101, doi. 10.1002/prot.20988

By:

Singh, Ranvir;
White, Mark A.;
Ramana, Kota V.;
Petrash, J. Mark;
Watowich, Stanley J.;
Bhatnagar, Aruni;
Srivastava, Satish K.

Publication type:

Article

Analysis and prediction of helix-helix interactions in membrane channels and transporters.

Published in:

Proteins, 2006, v. 64, n. 1, p. 253, doi. 10.1002/prot.20959

By:

Hildebrand, Peter Werner;
Lorenzen, Stephan;
Goede, Andrean;
Preissner, Robert

Publication type:

Article

Structure of phage protein BC1872 from Bacillus cereus, a singleton with new fold.

Published in:

Proteins, 2006, v. 64, n. 1, p. 280, doi. 10.1002/prot.20910

By:

Zhang, R.;
Joachimiak, G.;
Jiang, S.;
Cipriani, A.;
Collart, F.;
Joachimiak, A.

Publication type:

Article

Crystal structure of axolotl ( Ambystoma mexicanum) liver bile acid-binding protein bound to cholic and oleic acid.

Published in:

Proteins, 2006, v. 64, n. 1, p. 79, doi. 10.1002/prot.20961

By:

Capaldi, Stefano;
Guariento, Mara;
Perduca, Massimiliano;
Di Pietro, Santiago M.;
Santomé, José A.;
Monaco, Hugo L.

Publication type:

Article

Disulfide connectivity prediction with 70% accuracy using two-level models.

Published in:

Proteins, 2006, v. 64, n. 1, p. 246, doi. 10.1002/prot.20972

By:

Chen, Bo-Juen;
Tsai, Chi-Hung;
Chan, Chen-hsiung;
Kao, Cheng-Yan

Publication type:

Article

A combinatorial score to distinguish biological and nonbiological protein-protein interfaces.

Published in:

Proteins, 2006, v. 64, n. 1, p. 68, doi. 10.1002/prot.20954

By:

Liu, Shiyong;
Li, Qingliang;
Lai, Luhua

Publication type:

Article

A simple measure of native-state topology and chain connectivity predicts the folding rates of two-state proteins with and without crosslinks.

Published in:

Proteins, 2006, v. 64, n. 1, p. 193, doi. 10.1002/prot.20976

By:

Dixit, Purushottam D.;
Weikl, Thomas R.

Publication type:

Article

ATP-binding to P-type ATPases as revealed by biochemical, spectroscopic, and crystallographic experiments.

Published in:

Proteins, 2006, v. 64, n. 1, p. 1, doi. 10.1002/prot.20969

By:

Kubala, Martin

Publication type:

Article

Works matching IS 08873585 AND DT 2006 AND VI 64 AND IP 1

Specific DNA binding by the homeodomain Nkx2.5(C56S): Detection of impaired DNA or unfolded protein by isothermal titration calorimetry.

Accessibility of tobacco lipid transfer protein cavity revealed by <sup>15</sup>N NMR relaxation studies and molecular dynamics simulations.

Structural characterization of Salmonella typhimurium YeaZ, an M22 O-sialoglycoprotein endopeptidase homolog.

Unfolding transition state and intermediates of the tumor suppressor p16<sup>INK4a</sup> investigated by molecular dynamics simulations.

Protein-protein interactions in actin-myosin binding and structural effects of R405Q mutation: A molecular dynamics study.

Proteins of the same fold and unrelated sequences have similar amino acid composition.

Comparing programs for rigid-body multiple structural superposition of proteins.

Global multiple-sequence alignment with repeats.

De novo ligand design to an ensemble of protein structures.

Computational mutagenesis studies of protein structure-function correlations.

Assessing the acid-base and conformational properties of histidine residues in human prion protein (125-228) by means of pK<sub> a</sub> calculations and molecular dynamics simulations.

Crystal structures of the complexes of a group IIA phospholipase A<sub>2</sub> with two natural anti-inflammatory agents, anisic acid, and atropine reveal a similar mode of binding.

Analyzing large-scale structural change in proteins: Comparison of principal component projection and sammon mapping.

Molecular dynamics study of a calmodulin-like protein with an IQ peptide: Spontaneous refolding of the protein around the peptide.

Association of calcineurin with mitochondrial proteins.

Crystal structure of Homo sapiens thialysine N<sup>ϵ</sup>-acetyltransferase (HsSSAT2) in complex with acetyl coenzyme A.

Fibrous long spacing type collagen fibrils have a hierarchical internal structure.

Diffusion-collision of foldons elucidates the kinetic effects of point mutations and suggests control strategies of the folding process of helical proteins.

Multiple molecular dynamics simulations of human p450 monooxygenase CYP2C9: The molecular basis of substrate binding and regioselectivity toward warfarin.

Predicting calcium-binding sites in proteins-A graph theory and geometry approach.

Inhibition of protein-protein interactions: The discovery of druglike β-catenin inhibitors by combining virtual and biophysical screening.

Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.

Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins.

Structure of a glutathione conjugate bound to the active site of aldose reductase.

Analysis and prediction of helix-helix interactions in membrane channels and transporters.

Structure of phage protein BC1872 from Bacillus cereus, a singleton with new fold.

Crystal structure of axolotl ( Ambystoma mexicanum) liver bile acid-binding protein bound to cholic and oleic acid.

Disulfide connectivity prediction with 70% accuracy using two-level models.

A combinatorial score to distinguish biological and nonbiological protein-protein interfaces.

A simple measure of native-state topology and chain connectivity predicts the folding rates of two-state proteins with and without crosslinks.

ATP-binding to P-type ATPases as revealed by biochemical, spectroscopic, and crystallographic experiments.