Works matching IS 08873585 AND DT 2006 AND VI 62 AND IP 3

Results: 25

Exploiting sequence and structure homologs to identify protein-protein binding sites.

Published in:

Proteins, 2006, v. 62, n. 3, p. 630, doi. 10.1002/prot.20741

By:

Chung, Jo-Lan;
Wang, Wei;
Bourne, Philip E.

Publication type:

Article

Solution structure of YggX: A prokaryotic protein involved in Fe(II) trafficking.

Published in:

Proteins, 2006, v. 62, n. 3, p. 578, doi. 10.1002/prot.20781

By:

Cui, Qiu;
Thorgersen, Michael P.;
Westler, William M.;
Markley, John L.;
Downs, Diana M.

Publication type:

Article

Structure/function of KRAB repression domains: Structural properties of KRAB modules inferred from hydrodynamic, circular dichroism, and FTIR spectroscopic analyses.

Published in:

Proteins, 2006, v. 62, n. 3, p. 604, doi. 10.1002/prot.20792

By:

Mannini, Riccardo;
Rivieccio, Vincenzo;
D'Auria, Sabato;
Tanfani, Fabio;
Ausili, Alessio;
Facchiano, Aangelo;
Pedone, Carlo;
Grimaldi, Giovanna

Publication type:

Article

Conversion of type I 4:6 to 3:5 β-turn types in human acidic fibroblast growth factor: Effects upon structure, stability, folding, and mitogenic function.

Published in:

Proteins, 2006, v. 62, n. 3, p. 686, doi. 10.1002/prot.20808

By:

Lee, Jihun;
Dubey, Vikash Kumar;
Somasundaram, Thayumanasamy;
Blaber, Michael

Publication type:

Article

Alteration of protein subcellular location and domain formation by alternative translational initiation.

Published in:

Proteins, 2006, v. 62, n. 3, p. 793, doi. 10.1002/prot.20785

By:

Cai, Jun;
Huang, Ying;
Li, Fei;
Li, Yanda

Publication type:

Article

Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1.

Published in:

Proteins, 2006, v. 62, n. 3, p. 822, doi. 10.1002/prot.20796

By:

Nakamura, Tsutomu;
Yamamoto, Takahiko;
Inoue, Tsuyoshi;
Matsumura, Hiroyoshi;
Kobayashi, Atsuko;
Hagihara, Yoshihisa;
Uegaki, Koichi;
Ataka, Mitsuo;
Kai, Yasushi;
Ishikawa, Kazuhiko

Publication type:

Article

Ensemble-based signatures of energy propagation in proteins: A new view of an old phenomenon.

Published in:

Proteins, 2006, v. 62, n. 3, p. 728, doi. 10.1002/prot.20749

By:

Liu, Tong;
Whitten, Steven T.;
Hilser, Vincent J.

Publication type:

Article

Coupling of structural fluctuations to deamidation reaction in triosephosphate isomerase by Gaussian network model.

Published in:

Proteins, 2006, v. 62, n. 3, p. 715, doi. 10.1002/prot.20668

By:

Konuklar, F. A. S.;
Aviyente, V.;
Haliloğlu, T.

Publication type:

Article

NMR structure of the conserved novel-fold protein TA0743 from Thermoplasma acidophilum.

Published in:

Proteins, 2006, v. 62, n. 3, p. 819, doi. 10.1002/prot.20832

By:

Kim, Beomkyu;
Jung, Jinwon;
Hong, Eunmi;
Yee, Adelinda;
Arrowsmith, Cheryl H.;
Lee, Weontae

Publication type:

Article

Computational reconstruction of the human skeletal muscle secretome.

Published in:

Proteins, 2006, v. 62, n. 3, p. 776, doi. 10.1002/prot.20803

By:

Bortoluzzi, Stefania;
Scannapieco, Paolo;
Cestaro, Alessandro;
Danieli, Gian Antonio;
Schiaffino, Stefano

Publication type:

Article

Edge-count probabilities for the identification of local protein communities and their organization.

Published in:

Proteins, 2006, v. 62, n. 3, p. 800, doi. 10.1002/prot.20799

By:

Farutin, Victor;
Robison, Keith;
Lightcap, Eric;
Dancik, Vlado;
Ruttenberg, Alan;
Letovsky, Stanley;
Pradines, Joel

Publication type:

Article

Molecular dynamics simulations of LysRS: An asymmetric state.

Published in:

Proteins, 2006, v. 62, n. 3, p. 649, doi. 10.1002/prot.20609

By:

Hughes, Samantha J.;
Tanner, Julian A.;
Miller, Andrew D.;
Gould, Ian R.

Publication type:

Article

A topology-constrained distance network algorithm for protein structure determination from NOESY data.

Published in:

Proteins, 2006, v. 62, n. 3, p. 587, doi. 10.1002/prot.20820

By:

Huang, Yuanpeng Janet;
Tejero, Roberto;
Powers, Robert;
Montelione, Gaetano T.

Publication type:

Article

Binding site-based classification of coronaviral papain-like proteases.

Published in:

Proteins, 2006, v. 62, n. 3, p. 760, doi. 10.1002/prot.20802

By:

Sulea, Traian;
Lindner, Holger A.;
Purisima, Enrico O.;
Ménard, Robert

Publication type:

Article

Folding mechanism of β-hairpins studied by replica exchange molecular simulations.

Published in:

Proteins, 2006, v. 62, n. 3, p. 672, doi. 10.1002/prot.20813

By:

Zhang, Jian;
Qin, Meng;
Wang, Wei

Publication type:

Article

Crystal structure of a putative pyridoxine 5′-phosphate oxidase (Rv2607) from Mycobacterium tuberculosis.

Published in:

Proteins, 2006, v. 62, n. 3, p. 563, doi. 10.1002/prot.20824

By:

Pédelacq, Jean-Denis;
Rho, Beom-Seop;
Kim, Chang-Yub;
Waldo, Geoffrey S.;
Lekin, Timothy P.;
Segelke, Brent W.;
Rupp, Bernhard;
Hung, Li-Wei;
Kim, Su-Il;
Terwilliger, Thomas C.

Publication type:

Article

The role of backbone stability near Ala<sub>44</sub> in the high reduction potential class of rubredoxins.

Published in:

Proteins, 2006, v. 62, n. 3, p. 708, doi. 10.1002/prot.20806

By:

Tan, Ming-Liang;
Kang, ChulHee;
Ichiye, Toshiko

Publication type:

Article

Crystal structure of antigen TpF1 from Treponema pallidum.

Published in:

Proteins, 2006, v. 62, n. 3, p. 827, doi. 10.1002/prot.20828

By:

Thumiger, Anton;
Polenghi, Alessandra;
Papinutto, Elena;
Battistutta, Roberto;
Montecucco, Cesare;
Zanotti, Giuseppe

Publication type:

Article

Large-scale prediction of disulphide bridges using kernel methods, two-dimensional recursive neural networks, and weighted graph matching.

Published in:

Proteins, 2006, v. 62, n. 3, p. 617, doi. 10.1002/prot.20787

By:

Cheng, Jianlin;
Saigo, Hiroto;
Baldi, Pierre

Publication type:

Article

Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Plasmodium falciparum at 2.25 Å resolution reveals intriguing extra electron density in the active site.

Published in:

Proteins, 2006, v. 62, n. 3, p. 570, doi. 10.1002/prot.20801

By:

Robien, Mark A.;
Bosch, Jürgen;
Buckner, Frederick S.;
Van Voorhis, Wesley C. E.;
Worthey, Elizabeth A.;
Myler, Peter;
Mehlin, Christopher;
Boni, Erica E.;
Kalyuzhniy, Oleksandr;
Anderson, Lori;
Lauricella, Angela;
Gulde, Stacy;
Luft, Joseph R.;
DeTitta, George;
Caruthers, Jonathan M.;
Hodgson, Keith O.;
Soltis, Michael;
Zucker, Frank;
Verlinde, Christophe L. M. J.;
Merritt, Ethan A.

Publication type:

Article

Free energy surfaces of miniproteins with a ββα motif: Replica exchange molecular dynamics simulation with an implicit solvation model.

Published in:

Proteins, 2006, v. 62, n. 3, p. 663, doi. 10.1002/prot.20771

By:

Jang, Soonmin;
Kim, Eunae;
Pak, Youngshang

Publication type:

Article

A self-stabilized model of the chymotrypsin catalytic pocket. The energy profile of the overall catalytic cycle.

Published in:

Proteins, 2006, v. 62, n. 3, p. 749, doi. 10.1002/prot.20827

By:

Hudáky, Péter;
Perczel, András

Publication type:

Article

Protein design simulations suggest that side-chain conformational entropy is not a strong determinant of amino acid environmental preferences.

Published in:

Proteins, 2006, v. 62, n. 3, p. 739, doi. 10.1002/prot.20786

By:

Hu, Xiaozhen;
Kuhlman, Brian

Publication type:

Article

Two distinct heme distal site states define Cerebratulus lacteus mini-hemoglobin oxygen affinity.

Published in:

Proteins, 2006, v. 62, n. 3, p. 641, doi. 10.1002/prot.20822

By:

Martí, Marcelo A.;
Bikiel, Damían E.;
Crespo, Alejandro;
Nardini, Marco;
Bolognesi, Martino;
Estrin, Dario A.

Publication type:

Article

The determinants of stability in the human prion protein: Insights into folding and misfolding from the analysis of the change in the stabilization energy distribution in different conditions.

Published in:

Proteins, 2006, v. 62, n. 3, p. 698, doi. 10.1002/prot.20804

By:

Colacino, Stefano;
Tiana, Guido;
Broglia, Ricardo A.;
Colombo, Giorgio

Publication type:

Article