Works matching IS 08873585 AND DT 2005 AND VI 58 AND IP 4

Results: 23

The Protein Coil Library: A structural database of nonhelix, nonstrand fragments derived from the PDB.

Published in:

Proteins, 2005, v. 58, n. 4, p. 852, doi. 10.1002/prot.20394

By:

Fitzkee, Nicholas C.;
Fleming, Patrick J.;
Rose, George D.

Publication type:

Article

A 'solvated rotamer' approach to modeling water-mediated hydrogen bonds at protein-protein interfaces.

Published in:

Proteins, 2005, v. 58, n. 4, p. 893, doi. 10.1002/prot.20347

By:

Jiang, Lin;
Kuhlman, Brian;
Kortemme, Tanja;
Baker, David

Publication type:

Article

Native and modeled disulfide bonds in proteins: Knowledge-based approaches toward structure prediction of disulfide-rich polypeptides.

Published in:

Proteins, 2005, v. 58, n. 4, p. 866, doi. 10.1002/prot.20369

By:

Thangudu, Ratna Rajesh;
Vinayagam, A.;
Pugalenthi, G.;
Manonmani, A.;
Offmann, B.;
Sowdhamini, R.

Publication type:

Article

Crystal structure of an alanine-glyoxylate aminotransferase from Anabaena sp. at 1.70 Å resolution reveals a noncovalently linked PLP cofactor.

Published in:

Proteins, 2005, v. 58, n. 4, p. 971, doi. 10.1002/prot.20360

By:

Won Han, Gye;
Schwarzenbacher, Robert;
Page, Rebecca;
Jaroszewski, Lukasz;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanya;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Michael;
Elsliger, Marc-André;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric;
Haugen, Justin;
Hornsby, Michael

Publication type:

Article

Role of trehalose and heat in the structure of the C-terminal activation domain of the heat shock transcription factor.

Published in:

Proteins, 2005, v. 58, n. 4, p. 826, doi. 10.1002/prot.20371

By:

Bulman, Amanda L.;
Nelson, Hillary C.M.

Publication type:

Article

David Blow (1931-2004).

Published in:

Proteins, 2005, v. 58, n. 4, p. 775, doi. 10.1002/prot.20393

By:

Rossmann, Michael G.

Publication type:

Article

Crystal structure of a formiminotetrahydrofolate cyclodeaminase (TM1560) from Thermotoga maritima at 2.80 Å resolution reveals a new fold.

Published in:

Proteins, 2005, v. 58, n. 4, p. 976, doi. 10.1002/prot.20364

By:

Xu, Qingping;
Schwarzenbacher, Robert;
McMullan, Daniel;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanya;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Michael;
Elsliger, Marc-André;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hampton, Eric;
Hornsby, Michael;
Jaroszewski, Lukasz;
Klock, Heath E.;
Koesema, Eric

Publication type:

Article

Prediction of protein B-factor profiles.

Published in:

Proteins, 2005, v. 58, n. 4, p. 905, doi. 10.1002/prot.20375

By:

Yuan, Zheng;
Bailey, Timothy L.;
Teasdale, Rohan D.

Publication type:

Article

1.70 Å X-ray structure of human apo kallikrein 1: Structural changes upon peptide inhibitor/substrate binding.

Published in:

Proteins, 2005, v. 58, n. 4, p. 802, doi. 10.1002/prot.20368

By:

Laxmikanthan, Gurunathan;
Blaber, Sachiko I.;
Bernett, Matthew J.;
Scarisbrick, Isobel A.;
Juliano, Maria Aparecida;
Blaber, Michael

Publication type:

Article

Prediction of distant residue contacts with the use of evolutionary information.

Published in:

Proteins, 2005, v. 58, n. 4, p. 935, doi. 10.1002/prot.20370

By:

Vicatos, Spyridon;
Reddy, Boojala V.B.;
Kaznessis, Yiannis

Publication type:

Article

S-adenosylhomocysteine hydrolase from the archaeon Pyrococcus furiosus: Biochemical characterization and analysis of protein structure by comparative molecular modeling.

Published in:

Proteins, 2005, v. 58, n. 4, p. 815, doi. 10.1002/prot.20381

By:

Porcelli, Marina;
Moretti, Maria Angela;
Concilio, Luigi;
Forte, Sabrina;
Merlino, Antonello;
Graziano, Giuseppe;
Cacciapuoti, Giovanna

Publication type:

Article

Crystal structure of the ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non-heme iron oxygenase system.

Published in:

Proteins, 2005, v. 58, n. 4, p. 779, doi. 10.1002/prot.20374

By:

Nam, Jeong-Won;
Noguchi, Haruko;
Fujimoto, Zui;
Mizuno, Hiroshi;
Ashikawa, Yuji;
Abo, Mitsuru;
Fushinobu, Shinya;
Kobashi, Nobuyuki;
Wakagi, Takayoshi;
Iwata, Kenichi;
Yoshida, Takako;
Habe, Hiroshi;
Yamane, Hisakazu;
Omori, Toshio;
Nojiri, Hideaki

Publication type:

Article

The key role of atom types, reference states, and interaction cutoff radii in the knowledge-based method: New variational approach.

Published in:

Proteins, 2005, v. 58, n. 4, p. 845, doi. 10.1002/prot.20385

By:

Ruvinsky, A. M.;
Kozintsev, A. V.

Publication type:

Article

A new method for identification of protein (sub)families in a set of proteins based on hydropathy distribution in proteins.

Published in:

Proteins, 2005, v. 58, n. 4, p. 923, doi. 10.1002/prot.20356

By:

Pánek, Josef;
Eidhammer, Ingvar;
Aasland, Rein

Publication type:

Article

Properties of polyproline II, a secondary structure element implicated in protein-protein interactions.

Published in:

Proteins, 2005, v. 58, n. 4, p. 880, doi. 10.1002/prot.20327

By:

Cubellis, M. V.;
Caillez, F.;
Blundell, T. L.;
Lovell, S. C.

Publication type:

Article

Prediction of binding modes for ligands in the cytochromes P450 and other heme-containing proteins.

Published in:

Proteins, 2005, v. 58, n. 4, p. 836, doi. 10.1002/prot.20389

By:

Kirton, Stewart B.;
Murray, Christopher W.;
Verdonk, Marcel L.;
Taylor, Richard D.

Publication type:

Article

Selective targeting of indel-inferred differences in spatial structures of highly homologous proteins.

Published in:

Proteins, 2005, v. 58, n. 4, p. 950, doi. 10.1002/prot.20391

By:

Cherkasov, Artem;
Nandan, Devki;
Reiner, Neil E.

Publication type:

Article

Protein classification based on text document classification techniques.

Published in:

Proteins, 2005, v. 58, n. 4, p. 955, doi. 10.1002/prot.20373

By:

Cheng, Betty Yee Man;
Carbonell, Jaime G.;
Klein-Seetharaman, Judith

Publication type:

Article

Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology.

Published in:

Proteins, 2005, v. 58, n. 4, p. 855, doi. 10.1002/prot.20355

By:

Ponomarenko, Julia V.;
Bourne, Philip E.;
Shindyalov, Ilya N.

Publication type:

Article

Crystal structure of NH<sub>3</sub>-dependent NAD<sup>+</sup> synthetase from Helicobacter pylori.

Published in:

Proteins, 2005, v. 58, n. 4, p. 985, doi. 10.1002/prot.20377

By:

Kang, Gil Bu;
Kim, Yun Sik;
Im, Young Jun;
Rho, Seong-Hwan;
Lee, Jun Hyuck;
Eom, Soo Hyun

Publication type:

Article

Ybiv from Escherichia coli K12 is a HAD phosphatase.

Published in:

Proteins, 2005, v. 58, n. 4, p. 790, doi. 10.1002/prot.20267

By:

Roberts, Anne;
Lee, Seok-Yong;
McCullagh, Emma;
Silversmith, Ruth E.;
Wemmer, David E.

Publication type:

Article

Crystal structure of TT1662 from Thermus thermophilus HB8: A member of the α/β hydrolase fold enzymes.

Published in:

Proteins, 2005, v. 58, n. 4, p. 982, doi. 10.1002/prot.20361

By:

Murayama, Kazutaka;
Shirouzu, Mikako;
Terada, Takaho;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki

Publication type:

Article

Understanding the energetics of helical peptide orientation in membranes.

Published in:

Proteins, 2005, v. 58, n. 4, p. 913, doi. 10.1002/prot.20383

By:

Sengupta, Durba;
Meinhold, Lars;
Langosch, Dieter;
Ullmann, G. Matthias;
Smith, Jeremy C.

Publication type:

Article