Works matching IS 08873585 AND DT 2004 AND VI 57 AND IP 4

Results: 30

Crystal structure of chloramphenicol acetyltransferase B2 encoded by the multiresistance transposon Tn 2424.

Published in:

Proteins, 2004, v. 57, n. 4, p. 858, doi. 10.1002/prot.20250

By:

Qiu, Wei;
Shi, Rong;
Lu, Ming-Liang;
Zhou, Ming;
Roy, Paul H.;
Lapointe, Jacques;
Lin, Sheng-Xiang

Publication type:

Article

All-atom folding of the three-helix HIV accessory protein with an adaptive parallel tempering method.

Published in:

Proteins, 2004, v. 57, n. 4, p. 792, doi. 10.1002/prot.20290

By:

Schug, A.;
Herges, T.;
Wenzel, W.

Publication type:

Article

Determinants of cysteine pK<sub>a</sub> values in creatine kinase and α1-antitrypsin.

Published in:

Proteins, 2004, v. 57, n. 4, p. 799, doi. 10.1002/prot.20261

By:

Naor, Mor M.;
Jensen, Jan H.

Publication type:

Article

Crystal structure of a truncated version of the phage λ protein gpD.

Published in:

Proteins, 2004, v. 57, n. 4, p. 866, doi. 10.1002/prot.20254

By:

Chang, Changsoo;
Plückthun, Andreas;
Wlodawer, Alexander

Publication type:

Article

Modeling loop reorganization free energies of acetylcholinesterase: A comparison of explicit and implicit solvent models.

Published in:

Proteins, 2004, v. 57, n. 4, p. 645, doi. 10.1002/prot.20294

By:

Olson, Mark A.

Publication type:

Article

Characterization of the conformational space of a triple-stranded β-sheet forming peptide with molecular dynamics simulations.

Published in:

Proteins, 2004, v. 57, n. 4, p. 734, doi. 10.1002/prot.20236

By:

Soto, Patricia;
Colombo, Giorgio

Publication type:

Article

Exploring peptide energy landscapes: A test of force fields and implicit solvent models.

Published in:

Proteins, 2004, v. 57, n. 4, p. 665, doi. 10.1002/prot.20247

By:

Steinbach, Peter J.

Publication type:

Article

Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana.

Published in:

Proteins, 2004, v. 57, n. 4, p. 854, doi. 10.1002/prot.20258

By:

Smith, David W.;
Johnson, Kenneth A.;
Bingman, Craig A.;
Aceti, David J.;
Blommel, Paul G.;
Wrobel, Russell L.;
Frederick, Ronnie O.;
Zhao, Qin;
Sreenath, Hassan;
Fox, Brian G.;
Volkman, Brian F.;
Jeon, Won Bae;
Newman, Craig S.;
Ulrich, Eldon L.;
Hegeman, Adrian D.;
Kimball, Todd;
Thao, Sandy;
Sussman, Michael R.;
Markley, John L.;
Phillips, George N.

Publication type:

Article

Solution structure of γ-bungarotoxin: The functional significance of amino acid residues flanking the RGD motif in integrin binding.

Published in:

Proteins, 2004, v. 57, n. 4, p. 839, doi. 10.1002/prot.20269

By:

Shiu, Jia-Hau;
Chen, Chiu-Yueh;
Chang, Long-Sen;
Chen, Yi-Chun;
Chen, Yen-Chin;
Lo, Yu-Hui;
Liu, Yu-Chen;
Chuang, Woei-Jer

Publication type:

Article

X-ray structure of HI0817 from Haemophilus influenzae: Protein of unknown function with a novel fold.

Published in:

Proteins, 2004, v. 57, n. 4, p. 874, doi. 10.1002/prot.20260

By:

Galkin, Andrey;
Sarikaya, Elif;
Lehmann, Christopher;
Howard, Andrew;
Herzberg, Osnat

Publication type:

Article

Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8.

Published in:

Proteins, 2004, v. 57, n. 4, p. 883, doi. 10.1002/prot.20282

By:

Kishishita, Seiichiro;
Tatsuguchi, Ayako;
Ushikoshi-Nakayama, Ryoko;
Terada, Takaho;
Kuramitsu, Seiki;
Park, Sam-Yong;
Tame, Jeremy R. H.;
Shirouzu, Mikako;
Yokoyama, Shigeyuki

Publication type:

Article

Scoring function for automated assessment of protein structure template quality.

Published in:

Proteins, 2004, v. 57, n. 4, p. 702, doi. 10.1002/prot.20264

By:

Zhang, Yang;
Skolnick, Jeffrey

Publication type:

Article

Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations.

Published in:

Proteins, 2004, v. 57, n. 4, p. 783, doi. 10.1002/prot.20257

By:

Faraldo-Gómez, José D.;
Forrest, Lucy R.;
Baaden, Marc;
Bond, Peter J.;
Domene, Carmen;
Patargias, George;
Cuthbertson, Jonathan;
Sansom, Mark S.P.

Publication type:

Article

Automatic domain decomposition of proteins by a Gaussian Network Model.

Published in:

Proteins, 2004, v. 57, n. 4, p. 725, doi. 10.1002/prot.20268

By:

Kundu, Sibsankar;
Sorensen, Dan C.;
Phillips,, George N.

Publication type:

Article

Estimating protein-ligand binding free energy: Atomic solvation parameters for partition coefficient and solvation free energy calculation.

Published in:

Proteins, 2004, v. 57, n. 4, p. 651, doi. 10.1002/prot.20198

By:

Pei, Jianfeng;
Wang, Qi;
Zhou, Jiaju;
Lai, Luhua

Publication type:

Article

Structural and dynamic effects of α-Helix deletion in Sso7d: Implications for protein thermal stability.

Published in:

Proteins, 2004, v. 57, n. 4, p. 692, doi. 10.1002/prot.20270

By:

Merlino, Antonello;
Graziano, Giuseppe;
Mazzarella, Lelio

Publication type:

Article

Sequence-based prediction of pathological mutations.

Published in:

Proteins, 2004, v. 57, n. 4, p. 811, doi. 10.1002/prot.20252

By:

Ferrer-Costa, C.;
Orozco, M.;
de la Cruz, X.

Publication type:

Article

Relationship between local structural entropy and protein thermostabilty.

Published in:

Proteins, 2004, v. 57, n. 4, p. 684, doi. 10.1002/prot.20263

By:

Chan, Chen-Hsiung;
Liang, Han-Kuen;
Hsiao, Nai-Wan;
Ko, Ming-Tat;
Lyu, Ping-Chiang;
Hwang, Jenn-Kang

Publication type:

Article

Molecular recognition of aldehydes by aldehyde dehydrogenase and mechanism of nucleophile activation.

Published in:

Proteins, 2004, v. 57, n. 4, p. 758, doi. 10.1002/prot.20256

By:

Wymore, Troy;
Hempel, John;
Cho, Samuel S.;
MacKerell, Alexander D.;
Nicholas, Hugh B.;
Deerfield, David W.

Publication type:

Article

Three-dimensional model of a substrate-bound SARS chymotrypsin-like cysteine proteinase predicted by multiple molecular dynamics simulations: Catalytic efficiency regulated by substrate binding.

Published in:

Proteins, 2004, v. 57, n. 4, p. 747, doi. 10.1002/prot.20249

By:

Pang, Yuan-Ping

Publication type:

Article

Crystal structure of Bacillus subtilis YdaF protein: A putative ribosomal N-acetyltransferase.

Published in:

Proteins, 2004, v. 57, n. 4, p. 850, doi. 10.1002/prot.10601

By:

Brunzelle, Joseph S.;
Wu, Ruiying;
Korolev, Sergey V.;
Collart, Frank R.;
Joachimiak, Andrzej;
Anderson, Wayne F.

Publication type:

Article

Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin.

Published in:

Proteins, 2004, v. 57, n. 4, p. 878, doi. 10.1002/prot.20280

By:

Tempel, Wolfram;
Liu, Zhi-Jie (James);
Schubot, Florian D.;
Shah, Ashit;
Weinberg, Michael V.;
Jenney, Francis E.;
Arendall, W. Bryan;
Adams, Michael W. W.;
Richardson, Jane S.;
Richardson, David C.;
Rose, John P.;
Wang, Bi-Cheng

Publication type:

Article

Making optimal use of empirical energy functions: Force-field parameterization in crystal space.

Published in:

Proteins, 2004, v. 57, n. 4, p. 678, doi. 10.1002/prot.20251

By:

Krieger, Elmar;
Darden, Tom;
Nabuurs, Sander B.;
Finkelstein, Alexei;
Vriend, Gert

Publication type:

Article

Measurements of protein sequence-structure correlations.

Published in:

Proteins, 2004, v. 57, n. 4, p. 804, doi. 10.1002/prot.20262

By:

Crooks, Gavin E.;
Wolfe, Jason;
Brenner, Steven E.

Publication type:

Article

Specific DNA recognition by the Antp homeodomain: MD simulations of specific and nonspecific complexes.

Published in:

Proteins, 2004, v. 57, n. 4, p. 772, doi. 10.1002/prot.20273

By:

Gutmanas, Aleksandras;
Billeter, Martin

Publication type:

Article

Conformations of variably linked chimeric proteins evaluated by synchrotron X-ray small-angle scattering.

Published in:

Proteins, 2004, v. 57, n. 4, p. 829, doi. 10.1002/prot.20244

By:

Arai, Ryoichi;
Wriggers, Willy;
Nishikawa, Yukihiro;
Nagamune, Teruyuki;
Fujisawa, Tetsuro

Publication type:

Article

Crystal structure of hypothetical protein PH0828 from Pyrococcus horikoshii.

Published in:

Proteins, 2004, v. 57, n. 4, p. 862, doi. 10.1002/prot.20255

By:

Tajika, Yosuke;
Sakai, Naoki;
Tamura, Tomohiro;
Yao, Min;
Watanabe, Nobuhisa;
Tanaka, Isao

Publication type:

Article

Enzyme classification by ligand binding.

Published in:

Proteins, 2004, v. 57, n. 4, p. 711, doi. 10.1002/prot.20277

By:

Izrailev, Sergei;
Farnum, Michael A.

Publication type:

Article

Engineering of a polymeric bacterial protein as a scaffold for the multiple display of peptides.

Published in:

Proteins, 2004, v. 57, n. 4, p. 820, doi. 10.1002/prot.20248

By:

Laplagne, D.A.;
Zylberman, V.;
Ainciart, N.;
Steward, M. W.;
Sciutto, E.;
Fossati, C.A.;
Goldbaum, F. A.

Publication type:

Article

Crystal structure of hypothetical protein PH0642 from Pyrococcus horikoshii at 1.6Å resolution.

Published in:

Proteins, 2004, v. 57, n. 4, p. 869, doi. 10.1002/prot.20259

By:

Sakai, Naoki;
Tajika, Yosuke;
Yao, Min;
Watanabe, Nobuhisa;
Tanaka, Isao

Publication type:

Article