Works matching IS 08873585 AND DT 2004 AND VI 56 AND IP 3

Results: 23

Repacking of hydrophobic residues in a stable mutant of apocytochrome b<sub> 562</sub> selected by phage-display and proteolysis.

Published in:

Proteins, 2004, v. 56, n. 3, p. 426, doi. 10.1002/prot.20161

By:

Feng, Hanqiao;
Bai, Yawen

Publication type:

Article

Structural dynamics of an ionotropic glutamate receptor.

Published in:

Proteins, 2004, v. 56, n. 3, p. 411, doi. 10.1002/prot.20154

By:

Kubo, Minoru;
Ito, Etsuro

Publication type:

Article

Structural features of the inactive and active states of the melanin-concentrating hormone receptors: Insights from molecular simulations.

Published in:

Proteins, 2004, v. 56, n. 3, p. 430, doi. 10.1002/prot.20125

By:

Vitale, Rosa Maria;
Pedone, Carlo;
De Benedetti, Pier G.;
Fanelli, Francesca

Publication type:

Article

Crystal structures of Staphylococcus aureus type I dehydroquinase from enzyme turnover experiments.

Published in:

Proteins, 2004, v. 56, n. 3, p. 625, doi. 10.1002/prot.20165

By:

Nichols, C.E.;
Lockyer, M.;
Hawkins, A.R.;
Stammers, D.K.

Publication type:

Article

Classification of common functional loops of kinase super-families.

Published in:

Proteins, 2004, v. 56, n. 3, p. 539, doi. 10.1002/prot.20136

By:

Fernandez-Fuentes, Narcis;
Hermoso, Antoni;
Espadaler, Jordi;
Querol, Enrique;
Aviles, Francesc X.;
Oliva, Baldomero

Publication type:

Article

Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein-inhibitor association: Application to plasmepsin, cathepsin D and endothiapepsin-pepstatin complexes.

Published in:

Proteins, 2004, v. 56, n. 3, p. 572, doi. 10.1002/prot.20107

By:

Alexov, Emil

Publication type:

Article

Towards a MIP-based alignment and docking in computer-aided drug design.

Published in:

Proteins, 2004, v. 56, n. 3, p. 585, doi. 10.1002/prot.20153

By:

Barbany, Montserrat;
Terán, Hugo Gutiérrez-de-;
Sanz, Ferran;
Villà-Freixa, Jordi

Publication type:

Article

Alternative alignments from comparison of protein structures.

Published in:

Proteins, 2004, v. 56, n. 3, p. 519, doi. 10.1002/prot.20124

By:

Shih, Edward S.C.;
Hwang, Ming-Jing

Publication type:

Article

Crystal structure of an allantoicase (YIR029W) from Saccharomyces cerevisiae at 2.4 Å resolution.

Published in:

Proteins, 2004, v. 56, n. 3, p. 619, doi. 10.1002/prot.20164

By:

Xu, Qingping;
Schwarzenbacher, Robert;
Page, Rebecca;
Sims, Eric;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanya;
Brinen, Linda S.;
Cambell, Jamison;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Mike;
Elsliger, Marc-André;
Floyd, Ross;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hampton, Eric

Publication type:

Article

Cis/trans isomerization in HIV-1 capsid protein catalyzed by cyclophilin A: Insights from computational and theoretical studies.

Published in:

Proteins, 2004, v. 56, n. 3, p. 449, doi. 10.1002/prot.20135

By:

Agarwal, Pratul K.

Publication type:

Article

Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.

Published in:

Proteins, 2004, v. 56, n. 3, p. 502, doi. 10.1002/prot.20106

By:

Skolnick, Jeffrey;
Kihara, Daisuke;
Zhang, Yang

Publication type:

Article

A simple topological representation of protein structure: Implications for new, fast, and robust structural classification.

Published in:

Proteins, 2004, v. 56, n. 3, p. 487, doi. 10.1002/prot.20146

By:

Bostick, David L.;
Shen, Min;
Vaisman, Iosif I.

Publication type:

Article

Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 Å resolution.

Published in:

Proteins, 2004, v. 56, n. 3, p. 615, doi. 10.1002/prot.20139

By:

McMullan, Daniel;
Schwarzenbacher, Robert;
Jaroszewski, Lukasz;
Delft, Frank von;
Klock, Heath E.;
Vincent, Juli;
Quijano, Kevin;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanya;
Brinen, Linda S.;
Canaves, Jaume M.;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Mike;
Elsliger, Marc-André;
Eshaghi, Said;
Floyd, Ross;
Godzik, Adam;
Grittini, Carina

Publication type:

Article

Crystal structure of a novel manganese-containing cupin (TM1459) from Thermotoga maritima at 1.65 Å resolution.

Published in:

Proteins, 2004, v. 56, n. 3, p. 611, doi. 10.1002/prot.20130

By:

Jaroszewski, Lukasz;
Schwarzenbacher, Robert;
von Delft, Frank;
McMullan, Daniel;
Brinen, Linda S.;
Canaves, Jaume M.;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Mike;
Elsliger, Marc-André;
Eshagi, Said;
Floyd, Ross;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hampton, Eric;
Levin, Inna;
Karlak, Cathy;
Klock, Heath E.;
Koesema, Eric

Publication type:

Article

Crystal structure of a putative NADPH-dependent oxidoreductase (GI: 18204011) from mouse at 2.10 Å resolution.

Published in:

Proteins, 2004, v. 56, n. 3, p. 629, doi. 10.1002/prot.20163

By:

Levin, Inna;
Schwarzenbacher, Robert;
McMullan, Daniel;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanya;
Cambell, Jamison;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Michael;
Elsliger, Marc-André;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hampton, Eric;
Jaroszewski, Lukasz;
Karlak, Cathy;
Klock, Heath E.

Publication type:

Article

Molecular determinants of thapsigargin binding by SERCA Ca<sup>2+</sup>-ATPase: A computational docking study.

Published in:

Proteins, 2004, v. 56, n. 3, p. 595, doi. 10.1002/prot.20105

By:

Paula, Stefan;
Ball, William James

Publication type:

Article

Complex folding pathways in a simple β-hairpin.

Published in:

Proteins, 2004, v. 56, n. 3, p. 464, doi. 10.1002/prot.20127

By:

Wei, Guanghong;
Mousseau, Normand;
Derreumaux, Philippe

Publication type:

Article

Structural polymorphism of a marginally stable 4-α-helical bundle. Images of a trapped molten globule?

Published in:

Proteins, 2004, v. 56, n. 3, p. 420, doi. 10.1002/prot.20167

By:

Glykos, Nicholas M.;
Kokkindis, Michael

Publication type:

Article

Physical scoring function based on AMBER force field and Poisson-Boltzmann implicit solvent for protein structure prediction.

Published in:

Proteins, 2004, v. 56, n. 3, p. 475, doi. 10.1002/prot.20133

By:

Hsieh, Meng-Juei;
Luo, Ray

Publication type:

Article

DPANN: Improved sequence to structure alignments following fold recognition.

Published in:

Proteins, 2004, v. 56, n. 3, p. 528, doi. 10.1002/prot.20144

By:

Reinhardt, Astrid;
Eisenberg, David

Publication type:

Article

Adjacent cysteines are capable of ligating the same tetranuclear iron-sulfur cluster.

Published in:

Proteins, 2004, v. 56, n. 3, p. 556, doi. 10.1002/prot.20155

By:

Gurrath, Marion;
Friedrich, Thorsten

Publication type:

Article

Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: A protein with no known sequence homologues.

Published in:

Proteins, 2004, v. 56, n. 3, p. 564, doi. 10.1002/prot.20148

By:

Lim, Kap;
Sarikaya, Elif;
Galkin, Andrey;
Krajewski, Wojciech;
Pullalarevu, Sadhana;
Shin, Jae-Ho;
Kelman, Zvi;
Howard, Andrew;
Herzberg, Osnat

Publication type:

Article

Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-Å resolution reveals a new fold.

Published in:

Proteins, 2004, v. 56, n. 3, p. 607, doi. 10.1002/prot.20138

By:

Bakolitsa, Constantina;
Schwarzenbacher, Robert;
McMullan, Daniel;
Brinen, Linda S.;
Canaves, Jaume M.;
Dai, Xiaoping;
Deacon, Ashley M.;
Elsliger, Marc-André;
Eshagi, Said;
Floyd, Ross;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Jaroszewski, Lukasz;
Karlak, Cathy;
Klock, Heath E.;
Koesema, Eric;
Kovarik, John S.;
Kreusch, Andreas;
Kuhn, Peter

Publication type:

Article