Works matching IS 09618368 AND DT 2022 AND VI 31 AND IP 12

Results: 38

Issue information.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4111
Publication type:
Article
Investigating the allosteric response of the PICK1 PDZ domain to different ligands with all‐atom simulations.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4474
By:
- Stevens, Amy O.;
- Kazan, I. Can;
- Ozkan, Banu;
- He, Yi
Publication type:
Article
Snapshots of urea‐induced early structural changes and unfolding of an ankyrin repeat protein at atomic resolution.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4515
By:
- Medur Gurushankar, Mukund Sudharsan;
- Dalvi, Somavally;
- Venkatraman, Prasanna
Publication type:
Article
Differentiating between the sequence of structural events on alternative pathways of folding of a heterodimeric protein.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4513
By:
- Bhattacharjee, Rupam;
- Udgaonkar, Jayant B.
Publication type:
Article
Phage‐assisted, active site‐directed ligand evolution of a potent and selective histone deacetylase 8 inhibitor.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4512
By:
- Morse, Jared S.;
- Sheng, Yan J.;
- Hampton, Joshua Trae;
- Sylvain, Lauralee D.;
- Das, Sukant;
- Alugubelli, Yugendar R.;
- Chen, Peng‐Hsun Chase;
- Yang, Kai S.;
- Xu, Shiqing;
- Fierke, Carol A.;
- Liu, Wenshe Ray
Publication type:
Article
Quantifying the effects of lossy compression on energies calculated from molecular dynamics trajectories.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4511
By:
- Roe, Daniel R.;
- Brooks, Bernard R.
Publication type:
Article
The role of oligomerization in the optimization of cyclohexadienyl dehydratase conformational dynamics and catalytic activity.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4510
By:
- East, Nicholas J.;
- Clifton, Ben E.;
- Jackson, Colin J.;
- Kaczmarski, Joe A.
Publication type:
Article
Biophysical characterization of full‐length TAR DNA‐binding protein (TDP‐43) phase separation.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4509
By:
- Staderini, Tommaso;
- Bigi, Alessandra;
- Mongiello, Daniele;
- Cecchi, Cristina;
- Chiti, Fabrizio
Publication type:
Article
Development of charybdotoxin Q18F variant as a selective peptide blocker of neuronal BK(α + β4) channel for the treatment of epileptic seizures.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4506
By:
- Liu, Xinlian;
- Tao, Jie;
- Zhang, Shuzhang;
- Lan, Wenxian;
- Yao, Yu;
- Wang, Chunxi;
- Xue, Hongjuan;
- Ji, Yonghua;
- Li, Guoyi;
- Cao, Chunyang
Publication type:
Article
Stability profile of vimentin rod domain.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4505
By:
- Lilina, Anastasia V.;
- Leekens, Simon;
- Hashim, Hani M.;
- Vermeire, Pieter‐Jan;
- Harvey, Jeremy N.;
- Strelkov, Sergei V.
Publication type:
Article
Design of a H2O2‐generating P450SPα fusion protein for high yield fatty acid conversion.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4501
By:
- Giuriato, Daniele;
- Correddu, Danilo;
- Catucci, Gianluca;
- Di Nardo, Giovanna;
- Bolchi, Cristiano;
- Pallavicini, Marco;
- Gilardi, Gianfranco
Publication type:
Article
Investigation of the halophilic PET hydrolase PET6 from Vibrio gazogenes.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4500
By:
- Weigert, Sebastian;
- Perez‐Garcia, Pablo;
- Gisdon, Florian J.;
- Gagsteiger, Andreas;
- Schweinshaut, Kristine;
- Ullmann, G. Matthias;
- Chow, Jennifer;
- Streit, Wolfgang R.;
- Höcker, Birte
Publication type:
Article
Computational modeling studies reveal the origin of the binding preference of 3‐(3,4‐di hydroisoquinolin‐2(1H)‐ylsulfonyl)benzoic acids for AKR1C3 over its isoforms.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4499
By:
- Kong, Xiaotian;
- Xing, Enming;
- Wu, Sijin;
- Zhuang, Tony;
- Li, Pui‐Kai;
- Li, Chunhua;
- Cheng, Xiaolin
Publication type:
Article
Application of biophysical methods for improved protein production and characterization: A case study on an high‐temperature requirement A‐family bacterial protease.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4498
By:
- Ronzetti, Michael;
- Baljinnyam, Bolormaa;
- Jalal, Ishrat;
- Pal, Utpal;
- Simeonov, Anton
Publication type:
Article
BepiPred‐3.0: Improved B‐cell epitope prediction using protein language models.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4497
By:
- Clifford, Joakim Nøddeskov;
- Høie, Magnus Haraldson;
- Deleuran, Sebastian;
- Peters, Bjoern;
- Nielsen, Morten;
- Marcatili, Paolo
Publication type:
Article
Rapid prediction and analysis of protein intrinsic disorder.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4496
By:
- Dayhoff, Guy W.;
- Uversky, Vladimir N.
Publication type:
Article
Secondary structure and stability of a gel‐forming tardigrade desiccation‐tolerance protein.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4495
By:
- Eicher, Jonathan E.;
- Brom, Julia A.;
- Wang, Shikun;
- Sheiko, Sergei S.;
- Atkin, Joanna M.;
- Pielak, Gary J.
Publication type:
Article
Cover Image.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4493
Publication type:
Article
Issue information.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4111
Publication type:
Article
A backbone‐dependent rotamer library with high (ϕ, ψ) coverage using metadynamics simulations.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4491
By:
- Mortensen, Jennifer C.;
- Damjanovic, Jovan;
- Miao, Jiayuan;
- Hui, Tiffani;
- Lin, Yu‐Shan
Publication type:
Article
Inline small‐angle X‐ray scattering‐coupled chromatography under extreme hydrostatic pressure.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4489
By:
- Miller, Robert C.;
- Cummings, Cody;
- Huang, Qingqiu;
- Ando, Nozomi;
- Gillilan, Richard E.
Publication type:
Article
Selection of a PD‐1 blocking antibody from a novel fully human phage display library.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4486
By:
- Peissert, Frederik;
- Plüss, Louis;
- Giudice, Anna Maria;
- Ongaro, Tiziano;
- Villa, Alessandra;
- Elsayed, Abdullah;
- Nadal, Lisa;
- Dakhel Plaza, Sheila;
- Scietti, Luigi;
- Puca, Emanuele;
- De Luca, Roberto;
- Forneris, Federico;
- Neri, Dario
Publication type:
Article
Signal peptide stabilizes folding and inhibits misfolding of serum amyloid A.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4485
By:
- Wu, Jin‐Lin;
- Chen, Yun‐Ru
Publication type:
Article
Fast peptide exchange on major histocompatibility complex class I molecules by acidic stabilization of a peptide‐empty intermediate.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4478
By:
- Saikia, Ankur;
- Hadeler, Andries;
- Prasad, Pranathi;
- Zacharias, Martin;
- Springer, Sebastian
Publication type:
Article
GeoPacker: A novel deep learning framework for protein side‐chain modeling.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4484
By:
- Liu, Jiale;
- Zhang, Changsheng;
- Lai, Luhua
Publication type:
Article
Analysis of insertions and extensions in the functional evolution of the ribonucleotide reductase family.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4483
By:
- Burnim, Audrey A.;
- Xu, Da;
- Spence, Matthew A.;
- Jackson, Colin J.;
- Ando, Nozomi
Publication type:
Article
Dockground resource for protein recognition studies.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4481
By:
- Collins, Keeley W.;
- Copeland, Matthew M.;
- Kotthoff, Ian;
- Singh, Amar;
- Kundrotas, Petras J.;
- Vakser, Ilya A.
Publication type:
Article
Learning deep representations of enzyme thermal adaptation.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4480
By:
- Li, Gang;
- Buric, Filip;
- Zrimec, Jan;
- Viknander, Sandra;
- Nielsen, Jens;
- Zelezniak, Aleksej;
- Engqvist, Martin K. M.
Publication type:
Article
Computed cancer interactome explains the effects of somatic mutations in cancers.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4479
By:
- Zhang, Jing;
- Pei, Jimin;
- Durham, Jesse;
- Bos, Tasia;
- Cong, Qian
Publication type:
Article
Probing the origin of prion protein misfolding via reconstruction of ancestral proteins.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4477
By:
- Cortez, Leonardo M.;
- Morrison, Anneliese J.;
- Garen, Craig R.;
- Patterson, Sawyer;
- Uyesugi, Toshi;
- Petrosyan, Rafayel;
- Sekar, Rohith Vedhthaanth;
- Harms, Michael J.;
- Woodside, Michael T.;
- Sim, Valerie L.
Publication type:
Article
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4482
By:
- Burley, Stephen K.;
- Bhikadiya, Charmi;
- Bi, Chunxiao;
- Bittrich, Sebastian;
- Chao, Henry;
- Chen, Li;
- Craig, Paul A.;
- Crichlow, Gregg V.;
- Dalenberg, Kenneth;
- Duarte, Jose M.;
- Dutta, Shuchismita;
- Fayazi, Maryam;
- Feng, Zukang;
- Flatt, Justin W.;
- Ganesan, Sai J.;
- Ghosh, Sutapa;
- Goodsell, David S.;
- Green, Rachel Kramer;
- Guranovic, Vladimir;
- Henry, Jeremy
Publication type:
Article
PDBsum1: A standalone program for generating PDBsum analyses.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4473
By:
- Laskowski, Roman A.
Publication type:
Article
ArtiaX: An electron tomography toolbox for the interactive handling of sub‐tomograms in UCSF ChimeraX.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4472
By:
- Ermel, Utz H.;
- Arghittu, Serena M.;
- Frangakis, Achilleas S.
Publication type:
Article
Copper coordination states affect the flexibility of copper Metallochaperone Atox1: Insights from molecular dynamics simulations.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4464
By:
- Schwartz, Renana;
- Ruthstein, Sharon;
- Major, Dan Thomas
Publication type:
Article
An evolutionary history of the CoA‐binding protein Nat/Ivy.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4463
By:
- Longo, Liam M.;
- Hirai, Hayate;
- McGlynn, Shawn Erin
Publication type:
Article
BindWeb: A web server for ligand binding residue and pocket prediction from protein structures.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4462
By:
- Xia, Ying;
- Xia, Chunqiu;
- Pan, Xiaoyong;
- Shen, Hong‐Bin
Publication type:
Article
Allosteric links between the hydrophilic N‐terminus and transmembrane core of human Na+/H+ antiporter NHA2.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4460
By:
- Velázquez, Diego;
- Průša, Vojtěch;
- Masrati, Gal;
- Yariv, Elon;
- Sychrova, Hana;
- Ben‐Tal, Nir;
- Zimmermannova, Olga
Publication type:
Article
Approach to the specificity and selectivity between D2 and D3 receptors by mutagenesis and binding experiments part I: Expression and characterization of D2 and D3 receptor mutants.
Published in:
Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4459
By:
- Legros, Céline;
- Rojas, Anne;
- Dupré, Clémence;
- Brasseur, Chantal;
- Riest‐Fery, Isabelle;
- Muller, Olivier;
- Ortuno, Jean‐Claude;
- Nosjean, Olivier;
- Guenin, Sophie‐Pénélope;
- Ferry, Gilles;
- Boutin, Jean A.
Publication type:
Article

Works matching IS 09618368 AND DT 2022 AND VI 31 AND IP 12

Issue information.

Investigating the allosteric response of the PICK1 PDZ domain to different ligands with all‐atom simulations.

Snapshots of urea‐induced early structural changes and unfolding of an ankyrin repeat protein at atomic resolution.

Differentiating between the sequence of structural events on alternative pathways of folding of a heterodimeric protein.

Phage‐assisted, active site‐directed ligand evolution of a potent and selective histone deacetylase 8 inhibitor.

Quantifying the effects of lossy compression on energies calculated from molecular dynamics trajectories.

The role of oligomerization in the optimization of cyclohexadienyl dehydratase conformational dynamics and catalytic activity.

Biophysical characterization of full‐length TAR DNA‐binding protein (TDP‐43) phase separation.

Development of charybdotoxin Q18F variant as a selective peptide blocker of neuronal BK(α + β4) channel for the treatment of epileptic seizures.

Stability profile of vimentin rod domain.

Design of a H<sub>2</sub>O<sub>2</sub>‐generating P450<sub>SPα</sub> fusion protein for high yield fatty acid conversion.

Investigation of the halophilic PET hydrolase PET6 from Vibrio gazogenes.

Computational modeling studies reveal the origin of the binding preference of 3‐(3,4‐di hydroisoquinolin‐2(1H)‐ylsulfonyl)benzoic acids for AKR1C3 over its isoforms.

Application of biophysical methods for improved protein production and characterization: A case study on an high‐temperature requirement A‐family bacterial protease.

BepiPred‐3.0: Improved B‐cell epitope prediction using protein language models.

Rapid prediction and analysis of protein intrinsic disorder.

Secondary structure and stability of a gel‐forming tardigrade desiccation‐tolerance protein.

Cover Image.

Issue information.

A backbone‐dependent rotamer library with high (ϕ, ψ) coverage using metadynamics simulations.

Inline small‐angle X‐ray scattering‐coupled chromatography under extreme hydrostatic pressure.

Selection of a PD‐1 blocking antibody from a novel fully human phage display library.

Signal peptide stabilizes folding and inhibits misfolding of serum amyloid A.

Fast peptide exchange on major histocompatibility complex class I molecules by acidic stabilization of a peptide‐empty intermediate.

GeoPacker: A novel deep learning framework for protein side‐chain modeling.

Analysis of insertions and extensions in the functional evolution of the ribonucleotide reductase family.

Dockground resource for protein recognition studies.

Learning deep representations of enzyme thermal adaptation.

Computed cancer interactome explains the effects of somatic mutations in cancers.

Probing the origin of prion protein misfolding via reconstruction of ancestral proteins.

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.

PDBsum1: A standalone program for generating PDBsum analyses.

ArtiaX: An electron tomography toolbox for the interactive handling of sub‐tomograms in UCSF ChimeraX.

Copper coordination states affect the flexibility of copper Metallochaperone Atox1: Insights from molecular dynamics simulations.

An evolutionary history of the CoA‐binding protein Nat/Ivy.

BindWeb: A web server for ligand binding residue and pocket prediction from protein structures.

Allosteric links between the hydrophilic N‐terminus and transmembrane core of human Na<sup>+</sup>/H<sup>+</sup> antiporter NHA2.

Approach to the specificity and selectivity between D2 and D3 receptors by mutagenesis and binding experiments part I: Expression and characterization of D2 and D3 receptor mutants.