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Automated intensity modulated treatment planning: The expedited constrained hierarchical optimization (ECHO) system.
- Published in:
- Medical Physics, 2019, v. 46, n. 7, p. 2944, doi. 10.1002/mp.13572
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- Publication type:
- Article
Machine learning and modeling: Data, validation, communication challenges.
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- Medical Physics, 2018, v. 45, n. 10, p. e834, doi. 10.1002/mp.12811
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- Publication type:
- Article
Technical Note: Extension of CERR for computational radiomics: A comprehensive MATLAB platform for reproducible radiomics research.
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- Medical Physics, 2018, v. 45, n. 8, p. 3713, doi. 10.1002/mp.13046
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- Publication type:
- Article
Radiomics analysis of pulmonary nodules in low‐dose CT for early detection of lung cancer.
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- Medical Physics, 2018, v. 45, n. 4, p. 1537, doi. 10.1002/mp.12820
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- Publication type:
- Article
Gene interaction network analysis in multiple myeloma detects complex immune dysregulation associated with shorter survival.
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- Blood Cancer Journal, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41408-023-00935-2
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- Article
Editorial of Special Issue "Deep Learning and Machine Learning in Bioinformatics".
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- 2022
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- Publication type:
- Editorial
Pan-Cancer Prediction of Cell-Line Drug Sensitivity Using Network-Based Methods.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 3, p. 1074, doi. 10.3390/ijms23031074
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- Publication type:
- Article
Cross-Predicting Essential Genes between Two Model Eukaryotic Species Using Machine Learning.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 10, p. 5056, doi. 10.3390/ijms22105056
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- Publication type:
- Article
Artificial Intelligence in Bulk and Single-Cell RNA-Sequencing Data to Foster Precision Oncology.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4563, doi. 10.3390/ijms22094563
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- Publication type:
- Article
Towards the Interpretability of Machine Learning Predictions for Medical Applications Targeting Personalised Therapies: A Cancer Case Survey.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4394, doi. 10.3390/ijms22094394
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- Publication type:
- Article
Incorporating Machine Learning into Established Bioinformatics Frameworks.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 6, p. 2903, doi. 10.3390/ijms22062903
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- Publication type:
- Article
Dissecting Response to Cancer Immunotherapy by Applying Bayesian Network Analysis to Flow Cytometry Data.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 5, p. 2316, doi. 10.3390/ijms22052316
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- Publication type:
- Article
PUP-Fuse: Prediction of Protein Pupylation Sites by Integrating Multiple Sequence Representations.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 4, p. 2120, doi. 10.3390/ijms22042120
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- Publication type:
- Article
Diffusion and Perfusion MRI Predicts Response Preceding and Shortly After Radiosurgery to Brain Metastases: A Pilot Study.
- Published in:
- 2021
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- Publication type:
- journal article
PathCNN: interpretable convolutional neural networks for survival prediction and pathway analysis applied to glioblastoma.
- Published in:
- Bioinformatics, 2021, v. 37, p. i443, doi. 10.1093/bioinformatics/btab285
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- Publication type:
- Article
Computational methods using genome-wide association studies to predict radiotherapy complications and to identify correlative molecular processes.
- Published in:
- Scientific Reports, 2017, p. 43381, doi. 10.1038/srep43381
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- Publication type:
- Article
Complication Probability Models for Radiation-Induced Heart Valvular Dysfunction: Do Heart-Lung Interactions Play a Role?
- Published in:
- PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0111753
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- Publication type:
- Article
A Bioinformatics Filtering Strategy for Identifying Radiation Response Biomarker Candidates.
- Published in:
- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038870
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- Publication type:
- Article
Improvement in toxicity in high risk prostate cancer patients treated with image-guided intensity-modulated radiotherapy compared to 3D conformal radiotherapy without daily image guidance.
- Published in:
- Radiation Oncology, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1748-717X-9-44
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- Publication type:
- Article
Improvement in toxicity in high risk prostate cancer patients treated with image-guided intensity-modulated radiotherapy compared to 3D conformal radiotherapy without daily image guidance.
- Published in:
- 2014
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- Publication type:
- journal article
Dynamic contrast‐enhanced MRI model selection for predicting tumor aggressiveness in papillary thyroid cancers.
- Published in:
- NMR in Biomedicine, 2020, v. 33, n. 1, p. N.PAG, doi. 10.1002/nbm.4166
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- Publication type:
- Article
Design of broadband double-curved cross dipole ESPAR antennas.
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- Microwave & Optical Technology Letters, 2016, v. 58, n. 8, p. 1922, doi. 10.1002/mop.29946
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- Publication type:
- Article
The design of a dual band omnidirectional horizontally polarized antenna with arc-shaped lines and overlapping lines.
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- Microwave & Optical Technology Letters, 2016, v. 58, n. 5, p. 1117, doi. 10.1002/mop.29745
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- Publication type:
- Article
Quantitative in vivo proton MR spectroscopic assessment of lipid metabolism: Value for breast cancer diagnosis and prognosis.
- Published in:
- 2019
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- Publication type:
- journal article
Intravoxel incoherent motion diffusion-weighted MRI during chemoradiation therapy to characterize and monitor treatment response in human papillomavirus head and neck squamous cell carcinoma.
- Published in:
- 2017
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- Publication type:
- journal article
Breast cancer molecular subtype classifier that incorporates MRI features.
- Published in:
- 2016
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- Publication type:
- journal article
Breast cancer subtype intertumor heterogeneity: MRI-based features predict results of a genomic assay.
- Published in:
- 2015
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- Publication type:
- journal article
Geometric network analysis provides prognostic information in patients with high grade serous carcinoma of the ovary treated with immune checkpoint inhibitors.
- Published in:
- NPJ Genomic Medicine, 2021, v. 6, n. 1, p. 1, doi. 10.1038/s41525-021-00259-9
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- Publication type:
- Article
Longitudinal Monitoring of Simulated Interstitial Fluid Pressure for Pancreatic Ductal Adenocarcinoma Patients Treated with Stereotactic Body Radiotherapy.
- Published in:
- Cancers, 2021, v. 13, n. 17, p. 4319, doi. 10.3390/cancers13174319
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- Publication type:
- Article
Application of Community Detection Algorithm to Investigate the Correlation between Imaging Biomarkers of Tumor Metabolism, Hypoxia, Cellularity, and Perfusion for Precision Radiotherapy in Head and Neck Squamous Cell Carcinomas.
- Published in:
- Cancers, 2021, v. 13, n. 15, p. 3908, doi. 10.3390/cancers13153908
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- Publication type:
- Article
Nongaussian Intravoxel Incoherent Motion Diffusion Weighted and Fast Exchange Regime Dynamic Contrast-Enhanced-MRI of Nasopharyngeal Carcinoma: Preliminary Study for Predicting Locoregional Failure.
- Published in:
- Cancers, 2021, v. 13, n. 5, p. 1128, doi. 10.3390/cancers13051128
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- Publication type:
- Article
Inference of radio-responsive gene regulatory networks using the graphical lasso algorithm.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. Suppl 7, p. 1, doi. 10.1186/1471-2105-15-S7-S5
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- Publication type:
- Article
A kernel-based approach for detecting outliers of high-dimensional biological data.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S4-S7
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- Publication type:
- Article
Diffusion-Weighted and Dynamic Contrast-Enhanced MRI Derived Imaging Metrics for Stereotactic Body Radiotherapy of Pancreatic Ductal Adenocarcinoma: Preliminary Findings.
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- Tomography: A Journal for Imaging Research, 2020, v. 6, n. 2, p. 261, doi. 10.18383/j.tom.2020.00015
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- Publication type:
- Article
Diffusion-Weighted Echo Planar Imaging using MUltiplexed Sensitivity Encoding and Reverse Polarity Gradient in Head and Neck Cancer: An Initial Study.
- Published in:
- Tomography: A Journal for Imaging Research, 2020, v. 6, n. 2, p. 231, doi. 10.18383/j.tom.2020.00014
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- Publication type:
- Article
Computational Modeling of Interstitial Fluid Pressure and Velocity in Head and Neck Cancer Based on Dynamic Contrast-Enhanced Magnetic Resonance Imaging: Feasibility Analysis.
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- Tomography: A Journal for Imaging Research, 2020, v. 6, n. 2, p. 129, doi. 10.18383/j.tom.2020.00005
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- Publication type:
- Article
Early posttreatment assessment of MRI perfusion biomarkers can predict long-term response of lung cancer brain metastases to stereotactic radiosurgery.
- Published in:
- Neuro-Oncology, 2018, v. 20, n. 4, p. 567, doi. 10.1093/neuonc/nox159
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- Publication type:
- Article
Machine learning on genome-wide association studies to predict the risk of radiation-associated contralateral breast cancer in the WECARE Study.
- Published in:
- PLoS ONE, 2020, v. 15, n. 2, p. 1, doi. 10.1371/journal.pone.0226157
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- Publication type:
- Article
Highly accurate diagnosis of papillary thyroid carcinomas based on personalized pathways coupled with machine learning.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa336
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- Publication type:
- Article
A literature mining-based approach for identification of cellular pathways associated with chemoresistance in cancer.
- Published in:
- Briefings in Bioinformatics, 2016, v. 17, n. 3, p. 468, doi. 10.1093/bib/bbv053
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- Publication type:
- Article
A Two-way Parallel Searching for Peptide Identification via Tandem Mass Spectrometry.
- Published in:
- Engineering Letters, 2006, v. 13, n. 4, p. 344
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- Publication type:
- Article
MSQ: a tool for quantification of proteomics data generated by a liquid chromatography/matrix-assisted laser desorption/ionization time-of-flight tandem mass spectrometry based targeted quantitative proteomics platform.
- Published in:
- Rapid Communications in Mass Spectrometry: RCM, 2010, v. 24, n. 4, p. 403, doi. 10.1002/rcm.4407
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- Publication type:
- Article
Adaptive learning for relevance feedback: Application to digital mammography.
- Published in:
- Medical Physics, 2010, v. 37, n. 8, p. 4432, doi. 10.1118/1.3460839
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- Publication type:
- Article
Computational Modeling of Interstitial Fluid Pressure and Velocity in Non-small Cell Lung Cancer Brain Metastases Treated With Stereotactic Radiosurgery.
- Published in:
- Frontiers in Neurology, 2020, v. 11, p. 1, doi. 10.3389/fneur.2020.00402
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- Publication type:
- Article
Identifying radiation-induced survivorship syndromes affecting bowel health in a cohort of gynecological cancer survivors.
- Published in:
- PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0171461
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- Publication type:
- Article
Identification of biological correlates associated with respiratory failure in COVID-19.
- Published in:
- BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-00839-1
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- Publication type:
- Article
Interpretable deep neural network for cancer survival analysis by integrating genomic and clinical data.
- Published in:
- BMC Medical Genomics, 2019, v. 12, p. 1, doi. 10.1186/s12920-019-0624-2
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- Publication type:
- Article
Quality control of radiomic features using 3D-printed CT phantoms.
- Published in:
- Journal of Medical Imaging, 2021, v. 8, n. 3, p. 33505, doi. 10.1117/1.JMI.8.3.033505
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- Publication type:
- Article
Reproducibility of radiomic features using network analysis and its application in Wasserstein k-means clustering.
- Published in:
- Journal of Medical Imaging, 2021, v. 8, n. 3, p. 31904, doi. 10.1117/1.JMI.8.3.031904
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- Publication type:
- Article
Predictors of acute toxicities during definitive chemoradiation using intensity-modulated radiotherapy for anal squamous cell carcinoma.
- Published in:
- Acta Oncologica, 2016, v. 55, n. 2, p. 208, doi. 10.3109/0284186X.2015.1043396
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- Publication type:
- Article