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Leveraging deep phenotyping from health check-up cohort with 10,000 Korean individuals for phenome-wide association study of 136 traits.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-021-04580-2
By:
- Choe, Eun Kyung;
- Shivakumar, Manu;
- Verma, Anurag;
- Verma, Shefali Setia;
- Choi, Seung Ho;
- Kim, Joo Sung;
- Kim, Dokyoon
Publication type:
Article
A Network-Based Analysis of Disease Complication Associations for Obstetric Disorders in the UK Biobank.
Published in:
Journal of Personalized Medicine, 2021, v. 11, n. 12, p. 1382, doi. 10.3390/jpm11121382
By:
- Sriram, Vivek;
- Nam, Yonghyun;
- Shivakumar, Manu;
- Verma, Anurag;
- Jung, Sang-Hyuk;
- Lee, Seung Mi;
- Kim, Dokyoon
Publication type:
Article
Genetic association study of Alzheimer's disease through whole genome tiling analysis.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.063481
By:
- Bao, Jingxuan;
- Lee, Brian N;
- Zaranek, Sarah Wait;
- Lee, Matthew;
- Shivakumar, Manu;
- Wen, Junhao;
- Chen, Jiong;
- Wen, Zixuan;
- Yang, Shu;
- Huang, Heng;
- Saykin, Andrew J.;
- Thompson, Paul M;
- Davatzikos, Christos;
- Kim, Dokyoon;
- Zaranek, Alexander Wait;
- Shen, Li
Publication type:
Article
P4‐238: PATHWAY LEVEL CODON BIAS AMONG SYNONYMOUS RARE VARIANTS IS ASSOCIATED WITH ALZHEIMER'S DISEASE IMAGING BIOMARKER.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2018, v. 14, p. P1534, doi. 10.1016/j.jalz.2018.07.059
By:
- Miller, Jason E.;
- Shivakumar, Manu K.;
- Risacher, Shannon L.;
- Saykin, Andrew J.;
- Ritchie, Marylyn D.;
- Nho, Kwangsik;
- Kim, Dokyoon
Publication type:
Article
Increasing the Density of Laboratory Measures for Machine Learning Applications.
Published in:
Journal of Clinical Medicine, 2021, v. 10, n. 1, p. 103, doi. 10.3390/jcm10010103
By:
- Abedi, Vida;
- Li, Jiang;
- Shivakumar, Manu K.;
- Avula, Venkatesh;
- Chaudhary, Durgesh P.;
- Shellenberger, Matthew J.;
- Khara, Harshit S.;
- Zhang, Yanfei;
- Lee, Ming Ta Michael;
- Wolk, Donna M.;
- Yeasin, Mohammed;
- Hontecillas, Raquel;
- Bassaganya-Riera, Josep;
- Zand, Ramin
Publication type:
Article
Epigenetic interplay between methylation and miRNA in bladder cancer: focus on isoform expression.
Published in:
BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08052-9
By:
- Shivakumar, Manu;
- Han, Seonggyun;
- Lee, Younghee;
- Kim, Dokyoon
Publication type:
Article
Epigenetic interplay between methylation and miRNA in bladder cancer: focus on isoform expression.
Published in:
BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08052-9
By:
- Shivakumar, Manu;
- Han, Seonggyun;
- Lee, Younghee;
- Kim, Dokyoon
Publication type:
Article
Multi-layered network-based pathway activity inference using directed random walks: application to predicting clinical outcomes in urologic cancer.
Published in:
Bioinformatics, 2021, v. 37, n. 16, p. 2405, doi. 10.1093/bioinformatics/btab086
By:
- Kim, So Yeon;
- Choe, Eun Kyung;
- Shivakumar, Manu;
- Kim, Dokyoon;
- Sohn, Kyung-Ah
Publication type:
Article
NETMAGE: A human disease phenotype map generator for the network-based visualization of phenome-wide association study results.
Published in:
GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac002
By:
- Sriram, Vivek;
- Shivakumar, Manu;
- Jung, Sang-Hyuk;
- Nam, Yonghyun;
- Bang, Lisa;
- Verma, Anurag;
- Lee, Seunggeun;
- Choe, Eun Kyung;
- Kim, Dokyoon
Publication type:
Article
Genetic Analysis Reveals Rare Variants in T-Cell Response Gene MR1 Associated with Poor Overall Survival after Urothelial Cancer Diagnosis.
Published in:
Cancers, 2021, v. 13, n. 8, p. 1864, doi. 10.3390/cancers13081864
By:
- Bang, Lisa;
- Shivakumar, Manu;
- Garg, Tullika;
- Kim, Dokyoon;
- Vallet, Sonia
Publication type:
Article
Prognostic Effect of Inflammatory Genes on Stage I–III Colorectal Cancer—Integrative Analysis of TCGA Data.
Published in:
Cancers, 2021, v. 13, n. 4, p. 751, doi. 10.3390/cancers13040751
By:
- Choe, Eun Kyung;
- Lee, Sangwoo;
- Kim, So Yeon;
- Shivakumar, Manu;
- Park, Kyu Joo;
- Chai, Young Jun;
- Kim, Dokyoon;
- García-Olmo, Damián;
- Cama, Alessandro
Publication type:
Article
Author Correction: An exome-wide rare variant analysis of Korean men identifies three novel genes predisposing to prostate cancer.
Published in:
2020
By:
- Oh, Jong Jin;
- Shivakumar, Manu;
- Miller, Jason;
- Verma, Shefali;
- Lee, Hakmin;
- Hong, Sung Kyu;
- Lee, Sang Eun;
- Lee, Younghee;
- Lee, Soo Ji;
- Sung, Joohon;
- Kim, Dokyoon;
- Byun, Seok-Soo
Publication type:
Correction Notice
An exome-wide rare variant analysis of Korean men identifies three novel genes predisposing to prostate cancer.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53445-2
By:
- Oh, Jong Jin;
- Shivakumar, Manu;
- Miller, Jason;
- Verma, Shefali;
- Lee, Hakmin;
- Hong, Sung Kyu;
- Lee, Sang Eun;
- Lee, Younghee;
- Lee, Soo Ji;
- Sung, Joohon;
- Kim, Dokyoon;
- Byun, Seok-Soo
Publication type:
Article
Rare variants in the splicing regulatory elements of EXOC3L4 are associated with brain glucose metabolism in Alzheimer’s disease.
Published in:
BMC Medical Genomics, 2018, v. 11, n. 3, p. N.PAG, doi. 10.1186/s12920-018-0390-6
By:
- Miller, Jason E.;
- Shivakumar, Manu K.;
- Lee, Younghee;
- Han, Seonggyun;
- Horgousluoglu, Emrin;
- Risacher, Shannon L.;
- Saykin, Andrew J.;
- Nho, Kwangsik;
- Kim, Dokyoon
Publication type:
Article
Min-redundancy and max-relevance multi-view feature selection for predicting ovarian cancer survival using multi-omics data.
Published in:
BMC Medical Genomics, 2018, v. 11, n. 3, p. N.PAG, doi. 10.1186/s12920-018-0388-0
By:
- EL-Manzalawy, Yasser;
- Hsieh, Tsung-Yu;
- Shivakumar, Manu;
- Kim, Dokyoon;
- Honavar, Vasant
Publication type:
Article
Identification of epigenetic interactions between miRNA and DNA methylation associated with gene expression as potential prognostic markers in bladder cancer.
Published in:
BMC Medical Genomics, 2017, v. 10, p. 65, doi. 10.1186/s12920-017-0269-y
By:
- Shivakumar, Manu;
- Younghee Lee;
- Lisa Bang;
- Garg, Tullika;
- Kyung-Ah Sohn;
- Dokyoon Kim
Publication type:
Article
Long-term cardiovascular outcomes of gestational diabetes mellitus: a prospective UK Biobank study.
Published in:
Cardiovascular Diabetology, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12933-022-01663-w
By:
- Lee, Seung Mi;
- Shivakumar, Manu;
- Park, Ji Won;
- Jung, Young Mi;
- Choe, Eun Kyung;
- Kwak, Soo Heon;
- Oh, Sohee;
- Park, Joong Shin;
- Jun, Jong Kwan;
- Kim, Dokyoon;
- Yun, Jae-Seung
Publication type:
Article
Polygenic risk for type 2 diabetes, lifestyle, metabolic health, and cardiovascular disease: a prospective UK Biobank study.
Published in:
Cardiovascular Diabetology, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12933-022-01560-2
By:
- Yun, Jae-Seung;
- Jung, Sang-Hyuk;
- Shivakumar, Manu;
- Xiao, Brenda;
- Khera, Amit V.;
- Won, Hong-Hee;
- Kim, Dokyoon
Publication type:
Article
Exome-Wide Rare Variant Analysis From the DiscovEHR Study Identifies Novel Candidate Predisposition Genes for Endometrial Cancer.
Published in:
Frontiers in Oncology, 2019, p. 1, doi. 10.3389/fonc.2019.00574
By:
- Shivakumar, Manu;
- Miller, Jason E.;
- Dasari, Venkata Ramesh;
- Gogoi, Radhika;
- Kim, Dokyoon
Publication type:
Article
Correction to: Systematic characterization of germline variants from the DiscovEHR study endometrial carcinoma population.
Published in:
2019
By:
- Miller, Jason E.;
- Metpally, Raghu P.;
- Person, Thomas N.;
- Krishnamurthy, Sarathbabu;
- Dasari, Venkata Ramesh;
- Shivakumar, Manu;
- Lavage, Daniel R.;
- Cook, Adam M.;
- Carey, David J.;
- Ritchie, Marylyn D.;
- Kim, Dokyoon;
- Gogoi, Radhika
Publication type:
Correction Notice
Systematic characterization of germline variants from the DiscovEHR study endometrial carcinoma population.
Published in:
BMC Medical Genomics, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12920-019-0504-9
By:
- Miller, Jason E.;
- Metpally, Raghu P.;
- Person, Thomas N.;
- Krishnamurthy, Sarathbabu;
- Dasari, Venkata Ramesh;
- Shivakumar, Manu;
- Lavage, Daniel R.;
- Cook, Adam M.;
- Carey, David J.;
- Ritchie, Marylyn D.;
- Kim, Dokyoon;
- Gogoi, Radhika
Publication type:
Article
Development and validation of a novel strong prognostic index for colon cancer through a robust combination of laboratory features for systemic inflammation: a prognostic immune nutritional index.
Published in:
British Journal of Cancer, 2022, v. 126, n. 11, p. 1539, doi. 10.1038/s41416-022-01767-w
By:
- Jung, Sang-Hyuk;
- Hao, Jie;
- Shivakumar, Manu;
- Nam, Yonghyun;
- Kim, Jaesik;
- Kim, Min Jung;
- Ryoo, Seung-Bum;
- Choe, Eun Kyung;
- Jeong, Seung-Yong;
- Park, Kyu Joo;
- Park, Sung Chan;
- Sohn, Dae Kyung;
- Oh, Jae Hwan;
- Won, Hong-Hee;
- Kim, Dokyoon;
- Park, Ji Won
Publication type:
Article
Development and validation of a novel strong prognostic index for colon cancer through a robust combination of laboratory features for systemic inflammation: a prognostic immune nutritional index.
Published in:
2022
By:
- Jung, Sang-Hyuk;
- Hao, Jie;
- Shivakumar, Manu;
- Nam, Yonghyun;
- Kim, Jaesik;
- Kim, Min Jung;
- Ryoo, Seung-Bum;
- Choe, Eun Kyung;
- Jeong, Seung-Yong;
- Park, Kyu Joo;
- Park, Sung Chan;
- Sohn, Dae Kyung;
- Oh, Jae Hwan;
- Won, Hong-Hee;
- Kim, Dokyoon;
- Park, Ji Won
Publication type:
journal article
Quality Control Procedures for Genome‐Wide Association Studies.
Published in:
Current Protocols, 2022, v. 2, n. 11, p. 1, doi. 10.1002/cpz1.603
By:
- Truong, Van Q.;
- Woerner, Jakob A.;
- Cherlin, Tess A.;
- Bradford, Yuki;
- Lucas, Anastasia M.;
- Okeh, Chelsea C.;
- Shivakumar, Manu K.;
- Hui, Daniel H.;
- Kumar, Rachit;
- Pividori, Milton;
- Jones, S. Chris;
- Bossa, Abigail C.;
- Turner, Stephen D.;
- Ritchie, Marylyn D.;
- Verma, Shefali S.
Publication type:
Article
The effects of alternative splicing on miRNA binding sites in bladder cancer.
Published in:
PLoS ONE, 2018, v. 13, n. 1, p. 1, doi. 10.1371/journal.pone.0190708
By:
- Han, Seonggyun;
- Kim, Dongwook;
- Shivakumar, Manu;
- Lee, Young-Ji;
- Garg, Tullika;
- Miller, Jason E.;
- Kim, Ju Han;
- Kim, Dokyoon;
- Lee, Younghee
Publication type:
Article
1134-P: Polygenic Risk Score of Type 2 Diabetes as a Predictive Factor for Macrovascular Complications: A Prospective Population-Based UK Biobank Study.
Published in:
Diabetes, 2021, v. 70, p. N.PAG, doi. 10.2337/db21-1134-P
By:
- JUNG, SANGHYUK;
- KIM, DOKYOON;
- SHIVAKUMAR, MANU;
- WON, HONG-HEE;
- YUN, JAE-SEUNG
Publication type:
Article
Association between genetic risk and adherence to healthy lifestyle for developing age-related hearing loss.
Published in:
BMC Medicine, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12916-024-03364-5
By:
- Jung, Sang-Hyuk;
- Lee, Young Chan;
- Shivakumar, Manu;
- Kim, Jaeyoung;
- Yun, Jae-Seung;
- Park, Woong-Yang;
- Won, Hong-Hee;
- Kim, Dokyoon
Publication type:
Article
Polygenic risk score-based phenome-wide association study of head and neck cancer across two large biobanks.
Published in:
BMC Medicine, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12916-024-03305-2
By:
- Lee, Young Chan;
- Jung, Sang-Hyuk;
- Shivakumar, Manu;
- Cha, Soojin;
- Park, Woong-Yang;
- Won, Hong-Hee;
- Eun, Young-Gyu;
- Biobank, Penn Medicine;
- Kim, Dokyoon
Publication type:
Article

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