Works matching Base pairs

Results: 5000

RNAHelix: computational modeling of nucleic acid structures with Watson-Crick and non-canonical base pairs.

Published in:

Journal of Computer-Aided Molecular Design, 2017, v. 31, n. 2, p. 219, doi. 10.1007/s10822-016-0007-0

By:

Bhattacharyya, Dhananjay;
Halder, Sukanya;
Basu, Sankar;
Mukherjee, Debasish;
Kumar, Prasun;
Bansal, Manju

Publication type:

Article

Effects of metal ions on thermal stabilities of DNA duplexes containing homo- and heterochiral mismatched base pairs: comparison of internal and terminal substitutions.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2020, v. 39, n. 1-3, p. 310, doi. 10.1080/15257770.2019.1658116

By:

Funai, Tatsuya;
Adachi, Nahomi;
Aotani, Megumi;
Wada, Shun-ichi;
Urata, Hidehito

Publication type:

Article

Detection of protonated non-Watson--Crick base pairs using electrospray ionization mass spectrometry.

Published in:

Journal of Biochemistry, 2018, v. 163, n. 3, p. 215, doi. 10.1093/jb/mvx073

By:

Riyoko Ishida;
Hideo Iwahashi

Publication type:

Article

A DNA Structure Containing AgI-Mediated G:G and C:C Base Pairs.

Published in:

Angewandte Chemie, 2017, v. 129, n. 32, p. 9558, doi. 10.1002/ange.201704891

By:

Liu, Hehua;
Shen, Fusheng;
Haruehanroengra, Phensinee;
Yao, Qingqing;
Cheng, Yunshan;
Chen, Yiqing;
Yang, Chun;
Zhang, Jing;
Wu, Baixing;
Luo, Qiang;
Cui, Ruixue;
Li, Jixi;
Ma, Jinbiao;
Sheng, Jia;
Gan, Jianhua

Publication type:

Article

High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs.

Published in:

Angewandte Chemie International Edition, 2015, v. 54, n. 45, p. 13323, doi. 10.1002/anie.201507894

By:

Kondo, Jiro;
Tada, Yoshinari;
Dairaku, Takenori;
Saneyoshi, Hisao;
Okamoto, Itaru;
Tanaka, Yoshiyuki;
Ono, Akira

Publication type:

Article

A Family of Hydrazone-Based Nucleosides for Use in Metal-Mediated Base Pairs.

Published in:

Zeitschrift für Anorganische und Allgemeine Chemie, 2013, v. 639, n. 8/9, p. 1621, doi. 10.1002/zaac.201300061

By:

Radunsky, Christian;
Megger, Dominik A.;
Hepp, Alexander;
Kösters, Jutta;
Freisinger, Eva;
Müller, Jens

Publication type:

Article

Front Cover: 1,3,9‐Triaza‐2‐oxophenoxazine: An Artificial Nucleobase Forming Highly Stable Self‐Base Pairs with Three AgI Ions in a Duplex (Chem. Eur. J. 31/2019).

Published in:

Chemistry - A European Journal, 2019, v. 25, n. 31, p. 7403, doi. 10.1002/chem.201901481

By:

Fujii, Akane;
Nakagawa, Osamu;
Kishimoto, Yuki;
Okuda, Takumi;
Nakatsuji, Yusuke;
Nozaki, Natsumi;
Kasahara, Yuuya;
Obika, Satoshi

Publication type:

Article

1,3,9‐Triaza‐2‐oxophenoxazine: An Artificial Nucleobase Forming Highly Stable Self‐Base Pairs with Three AgI Ions in a Duplex.

Published in:

Chemistry - A European Journal, 2019, v. 25, n. 31, p. 7443, doi. 10.1002/chem.201900373

By:

Fujii, Akane;
Nakagawa, Osamu;
Kishimoto, Yuki;
Okuda, Takumi;
Nakatsuji, Yusuke;
Nozaki, Natsumi;
Kasahara, Yuuya;
Obika, Satoshi

Publication type:

Article

Hydrogen Bonding in Natural and Unnatural Base Pairs—A Local Vibrational Mode Study.

Published in:

Molecules, 2021, v. 26, n. 8, p. 2268, doi. 10.3390/molecules26082268

By:

Beiranvand, Nassim;
Freindorf, Marek;
Kraka, Elfi

Publication type:

Article

A New Generation of Minor-Groove-Binding—Heterocyclic Diamidines That Recognize G·C Base Pairs in an AT Sequence Context.

Published in:

Molecules, 2019, v. 24, n. 5, p. 946, doi. 10.3390/molecules24050946

By:

Paul, Ananya;
Guo, Pu;
Boykin, David W.;
Wilson, W. David

Publication type:

Article

A New Bias Site for Epigenetic Modifications: How Non‐Canonical GC Base Pairs Favor Mechanochemical Cleavage of DNA.

Published in:

BioEssays, 2020, v. 42, n. 11, p. 1, doi. 10.1002/bies.202000051

By:

Semyonov, Denis A.;
Eltsov, Ilia V.;
Nechipurenko, Yury D.

Publication type:

Article

RNABPDB: Molecular Modeling of RNA Structure—From Base Pair Analysis in Crystals to Structure Prediction.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2022, v. 14, n. 3, p. 759, doi. 10.1007/s12539-022-00528-w

By:

Mukherjee, Debasish;
Maiti, Satyabrata;
Gouda, Prasanta Kumar;
Sharma, Richa;
Roy, Parthajit;
Bhattacharyya, Dhananjay

Publication type:

Article

Silver(I)‐Mediated Base Pairs in DNA Sequences Containing 7‐Deazaguanine/Cytosine: towards DNA with Entirely Metallated Watson–Crick Base Pairs.

Published in:

Chemistry - A European Journal, 2018, v. 24, n. 18, p. 4583, doi. 10.1002/chem.201705131

By:

Méndez‐Arriaga, José M.;
Maldonado, Carmen R.;
Dobado, José A.;
Galindo, Miguel A.

Publication type:

Article

Selection and Characterization of Antibodies Recognizing Unnatural Base Pairs.

Published in:

Biologics, 2024, v. 4, n. 4, p. 423, doi. 10.3390/biologics4040026

By:

Lillo, Antonietta M.;
Velappan, Nileena;
Wu, Ruilian;
Bolding, Madeline R.

Publication type:

Article

DFT investigation of the vibrational properties of GC Watson-Crick and Hoogsteen base pairs in the presence of Mg, Ca, and Cu ions.

Published in:

Journal of Molecular Modeling, 2014, v. 20, n. 4, p. 1, doi. 10.1007/s00894-014-2220-x

By:

Morari, Cristian;
Muntean, Cristina;
Tripon, Carmen;
Buimaga-Iarinca, Luiza;
Calborean, Adrian

Publication type:

Article

Self‐Healing Properties of PDMS Elastomers via Guanine and Cytosine Base Pairs.

Published in:

Macromolecular Chemistry & Physics, 2019, v. 220, n. 18, p. N.PAG, doi. 10.1002/macp.201900280

By:

Chen, Ling;
Peng, Hao;
Wei, Yingying;
Wang, Xiaoyu;
Jin, Yajing;
Liu, Houtao;
Jiang, Yong

Publication type:

Article

Chiral‐at‐Metal Silver‐Mediated Base Pairs: Metal‐Centred Chirality versus DNA Helical Chirality.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 3, p. 1, doi. 10.1002/chem.202202630

By:

Lefringhausen, Nils;
Seiffert, Victoria;
Erbacher, Catharina;
Karst, Uwe;
Müller, Jens

Publication type:

Article

DNA Strand Displacement with Base Pair Stabilizers: Purine‐2,6‐Diamine and 8‐Aza‐7‐Bromo‐7‐Deazapurine‐2,6‐Diamine Oligonucleotides Invade Canonical DNA and New Fluorescent Pyrene Click Sensors Monitor the Reaction

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 72, p. 1, doi. 10.1002/chem.202202412

By:

Zhang, Aigui;
Kondhare, Dasharath;
Leonard, Peter;
Seela, Frank

Publication type:

Article

Role of Inosine–Uracil Base Pairs in the Canonical RNA Duplexes.

Published in:

Genes, 2018, v. 9, n. 7, p. 324, doi. 10.3390/genes9070324

By:

Špačková, Naďa;
Réblová, Kamila

Publication type:

Article

Products of Oxidative Guanine Damage Form Base Pairs with Guanine.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 20, p. 7645, doi. 10.3390/ijms21207645

By:

Kino, Katsuhito;
Kawada, Taishu;
Hirao-Suzuki, Masayo;
Morikawa, Masayuki;
Miyazawa, Hiroshi

Publication type:

Article

Halogen-Bonded Guanine Base Pairs, Quartets and Ribbons.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 18, p. 6571, doi. 10.3390/ijms21186571

By:

Thornton, Nicholas J.;
van Mourik, Tanja

Publication type:

Article

Single-Base Pair Genome Editing in Human Cells by Using Site-Specific Endonucleases.

Published in:

International Journal of Molecular Sciences, 2015, v. 16, n. 9, p. 21128, doi. 10.3390/ijms160921128

By:

Hiroshi Ochiai

Publication type:

Article

Effect of phenolic radicals on the geometry and electronic structure of DNA base pairs: computational study.

Published in:

International Journal of Modern Physics C: Computational Physics & Physical Computation, 2016, v. 27, n. 10, p. -1, doi. 10.1142/S0129183116501199

By:

Zarei, Mohammad;
Seif, Abdolvahab;
Azizi, Khaled;
Zarei, Mohanna;
Bahrami, Jamil

Publication type:

Article

Stable Hg(II)-mediated base pairs with a phenanthroline-derived nucleobase surrogate in antiparallel-stranded DNA.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2020, v. 25, n. 4, p. 647, doi. 10.1007/s00775-020-01788-x

By:

Jash, Biswarup;
Müller, Jens

Publication type:

Article

4-(2′-Pyridyl)imidazole as an artificial nucleobase in highly stabilizing Ag(I)-mediated base pairs.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2015, v. 20, n. 5, p. 895, doi. 10.1007/s00775-015-1274-2

By:

Schweizer, Kristina;
Kösters, Jutta;
Müller, Jens

Publication type:

Article

Molecular Dynamics Simulation of Melting of the DNA Duplex with Silver-Mediated Cytosine–Cytosine Base Pair.

Published in:

Computation, 2024, v. 12, n. 7, p. 145, doi. 10.3390/computation12070145

By:

Gusarova, Elena B.;
Kovaleva, Natalya A.

Publication type:

Article

A Dinuclear Mercury(II)-Mediated Base Pair in DNA.

Published in:

Angewandte Chemie International Edition, 2016, v. 55, n. 50, p. 15520, doi. 10.1002/anie.201608354

By:

Hebenbrock, Marian;
Mandal, Soham;
Müller, Jens

Publication type:

Article

A Highly Stabilizing Silver(I)-Mediated Base Pair in Parallel-Stranded DNA.

Published in:

Angewandte Chemie International Edition, 2015, v. 54, n. 12, p. 3603, doi. 10.1002/anie.201411931

By:

Sinha, Indranil;
Müller, Jens;
Fonseca Guerra, Célia

Publication type:

Article

Effects of monohydration on an adenine–thymine base pair.

Published in:

Theoretical Chemistry Accounts: Theory, Computation, & Modeling, 2015, v. 134, n. 7, p. 1, doi. 10.1007/s00214-015-1686-7

By:

Watanabe, Sara;
Ogata, Yudai;
Kawatsu, Tsutomu;
Kawashima, Yukio;
Tachikawa, Masanori

Publication type:

Article

Development of ABEEM σπ polarizable force field for oxidized adenine base pairs: investigation of the interaction and mutagenic mechanism.

Published in:

Theoretical Chemistry Accounts: Theory, Computation, & Modeling, 2014, v. 133, n. 4, p. 1, doi. 10.1007/s00214-014-1469-6

By:

Liu, Cui;
Wang, Yang;
Zhao, Dong-xia;
Gong, Li-dong;
Yang, Zhong-zhi

Publication type:

Article

Fluorescent Determination of Mercury(II) and Glutathione with Binding to Thymine–Guanine Base Pairs.

Published in:

Analytical Letters, 2023, v. 56, n. 6, p. 906, doi. 10.1080/00032719.2022.2109044

By:

Zhang, Liyuan;
Liu, Jinxiao;
Gao, Mengying;
Han, Li;
Liu, Xueguo;
Xing, Xiaojing

Publication type:

Article

Expanding the Genetic Code: Unnatural Base Pairs in Biological Systems.

Published in:

Molecular Biology, 2020, v. 54, n. 4, p. 475, doi. 10.1134/S0026893320040111

By:

Mukba, S. A.;
Vlasov, P. K.;
Kolosov, P. M.;
Shuvalova, E. Y.;
Egorova, T. V.;
Alkalaeva, E. Z.

Publication type:

Article

Two are not enough: synthetic strategies and applications of unnatural base pairs.

Published in:

Biological Chemistry, 2023, v. 404, n. 10, p. 883, doi. 10.1515/hsz-2023-0169

By:

Dörrenhaus, Robert;
Wagner, Philip K.;
Kath-Schorr, Stephanie

Publication type:

Article

Silver(I) Coordination in Silver(I)‐Mediated Homo Base Pairs of 6‐Pyrazolylpurine in DNA Duplexes Involves the Watson–Crick Edge.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 68, p. 16043, doi. 10.1002/chem.202002803

By:

Escher, Daniela;
Müller, Jens

Publication type:

Article

The Structural Basis for Processing of Unnatural Base Pairs by DNA Polymerases.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 16, p. 3446, doi. 10.1002/chem.201903525

By:

Marx, Andreas;
Betz, Karin

Publication type:

Article

Light‐Induced Formation of Thymine‐Containing Mercury(II)‐Mediated Base Pairs.

Published in:

Chemistry - A European Journal, 2019, v. 25, n. 71, p. 16214, doi. 10.1002/chem.201903789

By:

Naskar, Shuvankar;
Müller, Jens

Publication type:

Article

Functionalized Silver‐Ion‐Mediated α‐dC/β‐dC Hybrid Base Pairs with Exceptional Stability: α‐d‐5‐Iodo‐2′‐Deoxycytidine and Its Octadiynyl Derivative in Metal DNA.

Published in:

Chemistry - A European Journal, 2019, v. 25, n. 12, p. 3077, doi. 10.1002/chem.201805299

By:

Müller, Sebastian Lars;
Zhou, Xinglong;
Leonard, Peter;
Korzhenko, Oxana;
Daniliuc, Constantin;
Seela, Frank

Publication type:

Article

Contribution of nonconsensus base pairs within ArsR binding sequences toward ArsR-DNA binding and arsenic-mediated transcriptional induction.

Published in:

Journal of Biological Engineering, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s13036-019-0181-4

By:

Chen, Xingjuan;
Jiang, Xin;
Tie, Cuijuan;
Yoo, Jinnon;
Wang, Yan;
Xu, Meiying;
Sun, Guoping;
Guo, Jun;
Li, Xianqiang

Publication type:

Article

Application of a Metal-Mediated Base Pair to the Detection of Medicinally Relevant Single Nucleotide Polymorphisms.

Published in:

European Journal of Inorganic Chemistry, 2017, v. 2017, n. 33, p. 3857, doi. 10.1002/ejic.201700665

By:

Jash, Biswarup;
Müller, Jens

Publication type:

Article

New in silico approach to assessing RNA secondary structures with non-canonical base pairs.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0718-6

By:

Rybarczyk, Agnieszka;
Szostak, Natalia;
Antczak, Maciej;
Zok, Tomasz;
Popenda, Mariusz;
Adamiak, Ryszard;
Blazewicz, Jacek;
Szachniuk, Marta

Publication type:

Article

A Density Functional Theory and Information-Theoretic Approach Study of Interaction Energy and Polarizability for Base Pairs and Peptides.

Published in:

Pharmaceuticals (14248247), 2022, v. 15, n. 8, p. 938, doi. 10.3390/ph15080938

By:

Zhao, Dongbo;
Liu, Shubin;
Chen, Dahua

Publication type:

Article

Dynamic Structure and Stability of DNA Duplexes Bearing a Dinuclear Hg(II)-Mediated Base Pair.

Published in:

Molecules, 2020, v. 25, n. 21, p. 4942, doi. 10.3390/molecules25214942

By:

Bachmann, Jim;
Schönrath, Isabell;
Müller, Jens;
Doltsinis, Nikos L.;
Brehm, Martin

Publication type:

Article

Exploring a DNA Sequence for the Three-Dimensional Structure Determination of a Silver(I)-Mediated C-C Base Pair in a DNA Duplex By H NMR Spectroscopy.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2015, v. 34, n. 12, p. 877, doi. 10.1080/15257770.2015.1088160

By:

Dairaku, Takenori;
Furuita, Kyoko;
Sato, Hajime;
Kondo, Yoshinori;
Kojima, Chojiro;
Ono, Akira;
Tanaka, Yoshiyuki

Publication type:

Article

Accurate geometrical restraints for Watson–Crick base pairs.

Published in:

Acta Crystallographica Section B: Structural Science, Crystal Engineering & Materials, 2019, v. 75, n. 2, p. 235, doi. 10.1107/S2052520619002002

By:

Gilski, Miroslaw;
Zhao, Jianbo;
Kowiel, Marcin;
Brzezinski, Dariusz;
Turner, Douglas H.;
Jaskolski, Mariusz

Publication type:

Article

Impact of N-(2-aminoethyl) Glycine Unit on Watson-Crick Base Pairs.

Published in:

Zeitschrift für Physikalische Chemie, 2019, v. 233, n. 3, p. 449, doi. 10.1515/zpch-2017-1095

By:

Karunakaran, Indumathi;
Angamuthu, Abiram;
Gopalan, Praveena

Publication type:

Article

Base Pair Distance in Single‐DNA Molecule via TIRF‐Based Super‐Resolution Radial Fluctuations‐Stream Module.

Published in:

Bulletin of the Korean Chemical Society, 2020, v. 41, n. 4, p. 476, doi. 10.1002/bkcs.11982

By:

Nguyen, Huong Thi Thuy;
Kang, Seong Ho

Publication type:

Article

First Structure of a Designed Minor Groove Binding Heterocyclic Cation that Specifically Recognizes Mixed DNA Base Pair Sequences.

Published in:

Chemistry - A European Journal, 2017, v. 23, n. 69, p. 17612, doi. 10.1002/chem.201704563

By:

Harika, Narinder K.;
Germann, Markus W.;
Wilson, W. David

Publication type:

Article

Metal-Mediated Base Pairs: From Characterization to Application.

Published in:

Chemistry - A European Journal, 2017, v. 23, n. 68, p. 17166, doi. 10.1002/chem.201703518

By:

Jash, Biswarup;
Müller, Jens

Publication type:

Article

Anomeric 2′-Deoxycytidines and Silver Ions: Hybrid Base Pairs with Greatly Enhanced Stability and Efficient DNA Mismatch Detection with α-dC.

Published in:

Chemistry - A European Journal, 2017, v. 23, n. 49, p. 11776, doi. 10.1002/chem.201703017

By:

Guo, Xiurong;
Seela, Frank

Publication type:

Article

Excess Electron Transfer through DNA Duplexes Comprising a Metal-Mediated Base Pair.

Published in:

Chemistry - A European Journal, 2017, v. 23, n. 43, p. 10244, doi. 10.1002/chem.201702241

By:

Hensel, Susanne;
Eckey, Kevin;
Scharf, Philipp;
Megger, Nicole;
Karst, Uwe;
Müller, Jens

Publication type:

Article