Works matching DE "OPEN reading frames (Genetics)"

Results: 737

Functional analysis of polygalacturonase gene RsPG2 from Rhizoctonia solani, the pathogen of rice sheath blight.

Published in:

European Journal of Plant Pathology, 2017, v. 149, n. 2, p. 491, doi. 10.1007/s10658-017-1198-5

By:

Chen, Xijun;
Lili, Li;
Zhang, Yun;
Zhang, Jiahao;
Ouyang, Shouqiang;
Zhang, Qingxia;
Tong, Yunhui;
Xu, Jingyou;
Zuo, Shimin

Publication type:

Article

Complete genomic sequence of a Pineapple mealybug wilt- associated virus-1 from Hainan Island, China.

Published in:

European Journal of Plant Pathology, 2015, v. 141, n. 3, p. 611, doi. 10.1007/s10658-014-0545-z

By:

Yu, Naitong;
Luo, Zhiwen;
Fan, Hongyan;
Zhang, Zhili;
Li, Xianghong;
Wang, Jianhua;
Liu, Zhixin;
He, Fan

Publication type:

Article

AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs.

Published in:

Bioinformatics, 2017, v. 33, n. 6, p. 923, doi. 10.1093/bioinformatics/btw736

By:

Kochetov, Alex V.;
Allmer, Jens;
Klimenko, Alexandra I.;
Zuraev, Bulat S.;
Matushkin, Yury G.;
Lashin, Sergey A.

Publication type:

Article

LncVar: a database of genetic variation associated with long non-coding genes.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 112, doi. 10.1093/bioinformatics/btw581

By:

Xiaowei Chen;
Yajing Hao;
Ya Cui;
Zhen Fan;
Shunmin He;
Jianjun Luo;
Runsheng Chen

Publication type:

Article

GeneValidator: identify problems with protein-coding gene predictions.

Published in:

Bioinformatics, 2016, v. 32, n. 10, p. 1559, doi. 10.1093/bioinformatics/btw015

By:

Drăgan, Monica-Andreea;
Moghul, Ismail;
Priyam, Anurag;
Bustos, Claudio;
Wurm, Yannick

Publication type:

Article

LncRNA-ID: Long non-coding RNA IDentification using balanced random forests.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 3897, doi. 10.1093/bioinformatics/btv480

By:

Achawanantakun, Rujira;
Jiao Chen;
Yanni Sun;
Yuan Zhang

Publication type:

Article

Exploiting hidden information interleaved in the redundancy of the genetic code without prior knowledge.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1161, doi. 10.1093/bioinformatics/btu797

By:

Zur, Hadas;
Tuller, Tamir

Publication type:

Article

Exploiting hidden information interleaved in the redundancy of the genetic code without prior knowledge.

Published in:

Bioinformatics, 2015, v. 31, n. 7, p. 1161, doi. 10.1093/bioinformatics/btu797

By:

Zur, Hadas;
Tuller, Tamir

Publication type:

Article

Improved transcript isoform discovery using ORF graphs.

Published in:

Bioinformatics, 2014, v. 30, n. 14, p. 1958, doi. 10.1093/bioinformatics/btu160

By:

Majoros, William H.;
Lebeck, Niel;
Ohler, Uwe;
Li, Song

Publication type:

Article

BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2231, doi. 10.1093/bioinformatics/bts303

By:

Takahashi, Hiro;
Takahashi, Anna;
Naito, Satoshi;
Onouchi, Hitoshi

Publication type:

Article

Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02619-8

By:

Nomura, Yuhta;
Dohmae, Naoshi

Publication type:

Article

LINE-1 transcription in round spermatids is associated with accretion of 5-carboxylcytosine in their open reading frames.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02217-8

By:

Blythe, Martin J.;
Kocer, Ayhan;
Rubio-Roldan, Alejandro;
Giles, Tom;
Abakir, Abdulkadir;
Ialy-Radio, Côme;
Wheldon, Lee M.;
Bereshchenko, Oxana;
Bruscoli, Stefano;
Kondrashov, Alexander;
Drevet, Joël R.;
Emes, Richard D.;
Johnson, Andrew D.;
McCarrey, John R.;
Gackowski, Daniel;
Olinski, Ryszard;
Cocquet, Julie;
Garcia-Perez, Jose L.;
Ruzov, Alexey

Publication type:

Article

Global analysis of differential gene expression between prostate cancer and normal prostate tissues using cDNA microarray of open-reading frame expressed sequence tags (ORESTES).

Published in:

Prostate Cancer & Prostatic Diseases, 2000, v. 3, n. 1, p. S36, doi. 10.1038/sj.pcan.4500462

By:

Sarkis, AS

Publication type:

Article

Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information.

Published in:

International Journal of Genomics, 2016, p. 1, doi. 10.1155/2016/9185496

By:

Han, Siyu;
Liang, Yanchun;
Li, Ying;
Du, Wei

Publication type:

Article

Open Reading Frame Phylogenetic Analysis on the Cloud.

Published in:

International Journal of Genomics, 2013, p. 1, doi. 10.1155/2013/614923

By:

Che-Lun Hung;
Chun-Yuan Lin

Publication type:

Article

The Expression, Purification, and Characterization of a Ras Oncogene (Bras2) in Silkworm (Bombyx mori).

Published in:

International Journal of Genomics, 2013, p. 1, doi. 10.1155/2013/269609

By:

Zhengbing Lv;
Tao Wang;
Wenhua Zhuang;
Dan Wang;
Jian Chen;
Zuoming Nie;
Lili Liu;
Wenping Zhang;
Lisha Wang;
Deming Wang;
Xiangfu Wu;
Jun Li;
Lian Qian;
Yaozhou Zhang

Publication type:

Article

The mitochondrial genome of a sea anemone Bolocera sp. exhibits novel genetic structures potentially involved in adaptation to the deep-sea environment.

Published in:

Ecology & Evolution (20457758), 2017, v. 7, n. 13, p. 4951, doi. 10.1002/ece3.3067

By:

Zhang, Bo;
Zhang, Yan‐Hong;
Wang, Xin;
Zhang, Hui‐Xian;
Lin, Qiang

Publication type:

Article

Intermediate length C9orf72 expansion in an ALS patient without classical C9orf72 neuropathology.

Published in:

Amyotrophic Lateral Sclerosis & Frontotemporal Degeneration, 2015, v. 16, n. 3/4, p. 249, doi. 10.3109/21678421.2014.977296

By:

Beer, Alexander M.;
Cooper-Knock, Johnathan;
Higginbottom, Adrian;
Highley, J. Robin;
Wharton, Stephen B.;
Ince, Paul G.;
Milano, Antonio;
Jones, Ashley A.;
Al-Chalabi, Ammar;
Kirby, Janine;
Shaw, Pamela J.

Publication type:

Article

Molecular and Biological Characterization of the First Mymonavirus Identified in Fusarium oxysporum.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.870204

By:

Wang, Jing;
Li, Chengjun;
Song, Pengyu;
Qiu, Rui;
Song, Ruifang;
Li, Xiaojie;
Ni, Yunxia;
Zhao, Hui;
Liu, Hongyan;
Li, Shujun

Publication type:

Article

MOLECULAR CHARACTERIZATION AND PHYLOGENETIC ANALYSIS OF UNUSUAL X-TYPE HMW GLUTENIN SUBUNITS FROM 1SL GENOME OF Aegilops IN SUBUNIT longissima.

Published in:

Genetika (0534-0012), 2015, v. 47, n. 1, p. 185, doi. 10.2298/GENSR1501185Z

By:

Gengrui ZHU;
Shunli WANG;
Shoumin ZHEN;
Xixi SHEN;
PRODANOVIC, Slaven;
Yueming YAN

Publication type:

Article

Non-coding RNA may be associated with cytoplasmic male sterility in Silene vulgaris.

Published in:

Journal of Experimental Botany, 2017, v. 68, n. 7, p. 1599, doi. 10.1093/jxb/erx057

By:

Stone, James D.;
Koloušková, Pavla;
Sloan, Daniel B.;
Štorchová, Helena

Publication type:

Article

MutS HOMOLOG1 silencing mediates ORF220 substoichiometric shifting and causes male sterility in Brassica juncea.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 1, p. 435, doi. 10.1093/jxb/erv480

By:

Na Zhao;
Xinyue Xu;
Wamboldt, Yashitola;
Mackenzie, Sally A.;
Xiaodong Yang;
Zhongyuan Hu;
Jinghua Yang;
Mingfang Zhang

Publication type:

Article

Zm908p11, encoded by a short open reading frame (sORF) gene, functions in pollen tube growth as a profilin ligand in maize.

Published in:

Journal of Experimental Botany, 2013, v. 64, n. 8, p. 2359, doi. 10.1093/jxb/ert093

By:

Dong, Xue;
Wang, Dongxue;
Liu, Peng;
Li, Chengxia;
Zhao, Qian;
Zhu, Dengyun;
Yu, Jingjuan

Publication type:

Article

Modular organization and reticulate evolution of the ORF1 of Jockey superfamily transposable elements.

Published in:

Mobile DNA, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-8753-5-19

By:

Metcalfe, Cushla J.;
Casane, Didier

Publication type:

Article

Characterization of a novel dsRNA endornavirus in the plant pathogenic fungus Thielaviopsis basicola.

Published in:

Mycology: An International Journal on Fungal Biology, 2014, v. 5, n. 1, p. 10, doi. 10.1080/21501203.2014.884181

By:

Chen, Xiaobang;
Punja, Zamir K.

Publication type:

Article

In silico Phylogenetic Analysis of hAT Transposable Elements in Plants.

Published in:

Genes, 2018, v. 9, n. 6, p. 284, doi. 10.3390/genes9060284

By:

Pavlopoulou, Athanasia;
Karakülah, Gökhan

Publication type:

Article

Biofilm Formation by the Acidophile Bacterium Acidithiobacillus thiooxidans Involves c-di-GMP Pathway and Pel exopolysaccharide.

Published in:

Genes, 2018, v. 9, n. 2, p. 113, doi. 10.3390/genes9020113

By:

Díaz, Mauricio;
Castro, Matias;
Copaja, Sylvia;
Guiliani, Nicolas

Publication type:

Article

Isoform Sequencing Provides a More Comprehensive View of the Panax ginseng Transcriptome.

Published in:

Genes, 2017, v. 8, n. 9, p. 228, doi. 10.3390/genes8090228

By:

Ick-Hyun Jo;
Jinsu Lee;
Chi Eun Hong;
Dong Jin Lee;
Wonsil Bae;
Sin-Gi Park;
Yong Ju Ahn;
Young Chang Kim;
Jang Uk Kim;
Jung Woo Lee;
Dong Yun Hyun;
Sung-Keun Rhee;
Chang Pyo Hong;
Kyong Hwan Bang;
Hojin Ryu

Publication type:

Article

Identification of a New 1,4-beta-D-xylosidase <italic>Pae</italic>1263 from the Whole Genome Sequence of <italic>Paenibacillus terrae</italic> HPL-003.

Published in:

Biotechnology & Bioprocess Engineering, 2018, v. 23, n. 2, p. 168, doi. 10.1007/s12257-017-0246-5

By:

Kim, Dal Rye;
Lim, Hee Kyung;
Lee, Kee In;
Hwang, In Taek

Publication type:

Article

Molecular characteristics and extracellular expression analysis of farnesyl pyrophosphate synthetase gene in Inonotus obliquus.

Published in:

Biotechnology & Bioprocess Engineering, 2016, v. 21, n. 4, p. 515, doi. 10.1007/s12257-016-0348-5

By:

Yan, Zheng-Fei;
Lin, Pei;
Tian, Feng-Hua;
Kook, MooChang;
Yi, Tae-Hoo;
Li, Chang-Tian

Publication type:

Article

Molecular cloning and characterization of a novel glucansucrase from Leuconostoc mesenteroides subsp. mesenteroides LM34.

Published in:

Biotechnology & Bioprocess Engineering, 2014, v. 19, n. 4, p. 605, doi. 10.1007/s12257-014-0116-3

By:

Kang, Hee-Kyoung;
Nguyen, Thi;
Jeong, Ha-Na;
Park, Min-Eon;
Kim, Doman

Publication type:

Article

Poor codon optimality as a signal to degrade transcripts with frameshifts.

Published in:

Transcription (2154-1264), 2018, v. 9, n. 5, p. 327, doi. 10.1080/21541264.2018.1511676

By:

Schikora-Tamarit, Miquel Àngel;
Carey, Lucas B.

Publication type:

Article

Cytokine Profiles and Cell Proliferation Responses to Truncated ORF2 Protein in Iranian Patients Recovered from Hepatitis E Infection.

Published in:

Journal of Tropical Medicine (16879686), 2015, v. 2015, p. 1, doi. 10.1155/2015/523560

By:

Taherkhani, Reza;
Farshadpour, Fatemeh;
Makvandi, Manoochehr;
Rajabi Memari, Hamid;
Samarbafzadeh, Ali Reza;
Sharifi, Nasrin;
Naeimi, Behrouz;
Tajbakhsh, Saeed;
Akbarzadeh, Samad

Publication type:

Article

Vinasse fertirrigation alters soil resistome dynamics: an analysis based on metagenomic profiles.

Published in:

BioData Mining, 2017, v. 10, p. 1, doi. 10.1186/s13040-017-0138-4

By:

Braga, Lucas P. P.;
Alves, Rafael F.;
Dellias, Marina T. F.;
Navarrete, Acacio A.;
Basso, Thiago O.;
Tsai, Siu M.

Publication type:

Article

Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0205179

By:

Hazarika, Rashmi R.;
Sostaric, Nikolina;
Sun, Yifeng;
van Noort, Vera

Publication type:

Article

First natural crossover recombination between two distinct species of the family Closteroviridae leads to the emergence of a new disease.

Published in:

PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0198228

By:

Ruiz, Leticia;
Simón, Almudena;
García, Carmen;
Velasco, Leonardo;
Janssen, Dirk

Publication type:

Article

Characterization of a novel member of the family Caulimoviridae infecting Dioscorea nummularia in the Pacific, which may represent a new genus of dsDNA plant viruses.

Published in:

PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0203038

By:

Sukal, Amit C.;
Kidanemariam, Dawit B.;
Dale, James L.;
Harding, Robert M.;
James, Anthony P.

Publication type:

Article

Molecular characterization of a novel Aureusvirus infecting elderberry (Sambucus nigra L.).

Published in:

PLoS ONE, 2018, v. 13, n. 8, p. 1, doi. 10.1371/journal.pone.0200506

By:

Šafářová, Dana;
Vavroušková, Karolína;
Candresse, Thierry;
Navrátil, Milan

Publication type:

Article

Revalidation and genetic characterization of new members of Group C (Orthobunyavirus genus, Peribunyaviridae family) isolated in the Americas.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0197294

By:

Nunes, Márcio Roberto Teixeira;
de Souza, William Marciel;
Acrani, Gustavo Olszanski;
Cardoso, Jedson Ferreira;
da Silva, Sandro Patroca;
Badra, Soraya Jabur;
Figueiredo, Luiz Tadeu Moraes;
Vasconcelos, Pedro Fernando da Costa

Publication type:

Article

The influence of transcript assembly on the proteogenomics discovery of microproteins.

Published in:

PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0194518

By:

Ma, Jiao;
Saghatelian, Alan;
Shokhirev, Maxim Nikolaievich

Publication type:

Article

Identification and characterization of phenol hydroxylase from phenol-degrading Candida tropicalis strain JH8.

Published in:

Canadian Journal of Microbiology, 2014, v. 60, n. 9, p. 585, doi. 10.1139/cjm-2014-0417

By:

Long, Yan;
Yang, Sheng;
Xie, Zhixiong;
Cheng, Li

Publication type:

Article

Identification and characterization of GEO1, a new class II hydrophobin from Geosmithia spp.

Published in:

Canadian Journal of Microbiology, 2012, v. 58, n. 8, p. 965, doi. 10.1139/w2012-069

By:

Bettini, Priscilla P.;
Frascella, Arcangela;
Comparini, Cecilia;
Carresi, Lara;
Pepori, Alessia L.;
Pazzagli, Luigia;
Cappugi, Gianni;
Scala, Felice;
Scala, Aniello

Publication type:

Article

Characterization of the complete genome segments from BmCPV-SZ, a novel Bombyx mori cypovirus 1 isolate.

Published in:

Canadian Journal of Microbiology, 2012, v. 58, n. 7, p. 872, doi. 10.1139/w2012-064

By:

Cao, Guangli;
Meng, Xiangkun;
Xue, Renyu;
Zhu, Yuexiong;
Zhang, Xiaorong;
Pan, Zhonghua;
Zheng, Xiaojian;
Gong, Chengliang

Publication type:

Article

Map-based cloning of the dominant genic male sterile Ms- cd1 gene in cabbage ( Brassica oleracea).

Published in:

Theoretical & Applied Genetics, 2017, v. 130, n. 1, p. 71, doi. 10.1007/s00122-016-2792-1

By:

Liang, Jianli;
Ma, Yuan;
Wu, Jian;
Cheng, Feng;
Liu, Bo;
Wang, Xiaowu

Publication type:

Article

Map-based cloning of a recessive genic male sterility locus in Brassica napus L. and development of its functional marker.

Published in:

Theoretical & Applied Genetics, 2012, v. 125, n. 2, p. 223, doi. 10.1007/s00122-012-1827-5

By:

Li, Ji;
Hong, Dengfeng;
He, Junping;
Ma, Lei;
Wan, Lili;
Liu, Pingwu;
Yang, Guangsheng

Publication type:

Article

Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma.

Published in:

Nature Medicine, 2015, v. 21, n. 9, p. 1060, doi. 10.1038/nm.3919

By:

Rodić, Nemanja;
Steranka, Jared P;
Makohon-Moore, Alvin;
Moyer, Allison;
Shen, Peilin;
Sharma, Reema;
Kohutek, Zachary A;
Huang, Cheng Ran;
Ahn, Daniel;
Mita, Paolo;
Taylor, Martin S;
Barker, Norman J;
Hruban, Ralph H;
Iacobuzio-Donahue, Christine A;
Boeke, Jef D;
Burns, Kathleen H

Publication type:

Article

Myeloid-derived growth factor (C19orf10) mediates cardiac repair following myocardial infarction.

Published in:

Nature Medicine, 2015, v. 21, n. 2, p. 140, doi. 10.1038/nm.3778

By:

Korf-Klingebiel, Mortimer;
Reboll, Marc R;
Klede, Stefanie;
Brod, Torben;
Pich, Andreas;
Polten, Felix;
Napp, L Christian;
Bauersachs, Johann;
Ganser, Arnold;
Brinkmann, Eva;
Reimann, Ines;
Kempf, Tibor;
Niessen, Hans W;
Mizrahi, Jacques;
Schönfeld, Hans-Joachim;
Iglesias, Antonio;
Bobadilla, Maria;
Wang, Yong;
Wollert, Kai C

Publication type:

Article

Molecular Cloning and Characterization of Mannose Binding Lectin Homologue from Snow Trout ( Schizothorax richardsonii).

Published in:

Protein Journal, 2015, v. 34, n. 1, p. 1, doi. 10.1007/s10930-014-9591-9

By:

Pande, Veena;
Sahoo, Prabhati;
Goel, Chirag;
Barat, Ashoktaru

Publication type:

Article

Small Open Reading Frames.

Published in:

Resonance: Journal of Science Education, 2018, v. 23, n. 1, p. 57, doi. 10.1007/s12045-018-0594-2

By:

Yazhini, A.

Publication type:

Article

Identification of a drought- and cold-stress inducible WRKY gene in the cold-hardy Citrus relative Poncirus trifoliata.

Published in:

New Zealand Journal of Crop & Horticultural Science, 2013, v. 41, n. 2, p. 57, doi. 10.1080/01140671.2012.731654

By:

Şahin-Çevik, Mehtap;
Moore, GloriaA

Publication type:

Article