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Selection of optimal quantile protein biomarkers based on cell-level immunohistochemistry data.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05408-8
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OGRE: calculate, visualize, and analyze overlap between genomic input regions and public annotations.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05422-w
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The metabolomics workbench file status website: a metadata repository promoting FAIR principles of metabolomics data.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05423-9
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- Article
Searching for protein variants with desired properties using deep generative models.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05415-9
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Enhancing drug property prediction with dual-channel transfer learning based on molecular fragment.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05413-x
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xenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05410-0
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ForestSubtype: a cancer subtype identifying approach based on high-dimensional genomic data and a parallel random forest.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05412-y
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- Article
Causal discovery approach with reinforcement learning for risk factors of type II diabetes mellitus.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05405-x
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- Article
CamPype: an open-source workflow for automated bacterial whole-genome sequencing analysis focused on Campylobacter.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05414-w
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A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05397-8
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Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05406-w
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Leveraging pre-trained language models for mining microbiome-disease relationships.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05411-z
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- Article
P-TransUNet: an improved parallel network for medical image segmentation.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05409-7
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- Article
MTG-Link: leveraging barcode information from linked-reads to assemble specific loci.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05395-w
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Improvement of variables interpretability in kernel PCA.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05404-y
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- Article
VolumePeeler: a novel FIJI plugin for geometric tissue peeling to improve visualization and quantification of 3D image stacks.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05403-z
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- Article
Prognostic analysis of uveal melanoma based on the characteristic genes of M2-type macrophages in the tumor microenvironment.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05396-9
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- Article
GeCoNet-Tool: a software package for gene co-expression network construction and analysis.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05382-1
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- Article
Supervised topological data analysis for MALDI mass spectrometry imaging applications.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05402-0
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- Article
AMEND: active module identification using experimental data and network diffusion.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05376-z
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- Article
VGAEDTI: drug-target interaction prediction based on variational inference and graph autoencoder.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05387-w
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- Article
Neuroimaging feature extraction using a neural network classifier for imaging genetics.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05394-x
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- Article
DeeP4med: deep learning for P4 medicine to predict normal and cancer transcriptome in multiple human tissues.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05400-2
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- Article
The prognostic value and immune landscaps of m6A/m5C-related lncRNAs signature in the low grade glioma.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05386-x
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- Article
Deep ensemble approach for pathogen classification in large-scale images using patch-based training and hyper-parameter optimization.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05398-7
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- Article
MOKPE: drug–target interaction prediction via manifold optimization based kernel preserving embedding.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05401-1
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- Article
Comparing methods for drug–gene interaction prediction on the biomedical literature knowledge graph: performance versus explainability.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05373-2
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- Article
Multiomics data analyses to identify SLC25A17 as a novel biomarker to predict the prognosis and immune microenvironment in head and neck squamous cell carcinoma.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05399-6
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- Article
Comprehensive analysis of KLF2 as a prognostic biomarker associated with fibrosis and immune infiltration in advanced hepatocellular carcinoma.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05391-0
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- Article
PATH-SURVEYOR: pathway level survival enquiry for immuno-oncology and drug repurposing.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05393-y
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- Article
Cancer survival prediction by learning comprehensive deep feature representation for multiple types of genetic data.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05392-z
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- Article
topr: an R package for viewing and annotating genetic association results.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05301-4
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- Article
Advances in monolingual and crosslingual automatic disability annotation in Spanish.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05372-3
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- Article
Gene regulatory network inference based on a nonhomogeneous dynamic Bayesian network model with an improved Markov Monte Carlo sampling.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05381-2
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- Article
Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05389-8
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- Article
The Poisson distribution model fits UMI-based single-cell RNA-sequencing data.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05349-2
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- Article
Assumptions on decision making and environment can yield multiple steady states in microbial community models.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05325-w
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- Article
BeEM: fast and faithful conversion of mmCIF format structure files to PDB format.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05388-9
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- Article
Exploration of m<sup>6</sup>A methylation regulators as epigenetic targets for immunotherapy in advanced sepsis.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05379-w
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- Article
Covariance regression with random forests.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05377-y
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- Publication type:
- Article
DeepASDPred: a CNN-LSTM-based deep learning method for Autism spectrum disorders risk RNA identification.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05378-x
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- Publication type:
- Article
A MATLAB-based app to improve LC–MS/MS data analysis for N-linked glycan peak identification.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05346-5
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- Article
Endoplasmic reticulum stress-related gene model predicts prognosis and guides therapies in lung adenocarcinoma.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05384-z
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- Article
WormTensor: a clustering method for time-series whole-brain activity data from C. elegans.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05230-2
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- Article
CastNet: a systems-level sequence evolution simulator.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05366-1
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- Publication type:
- Article
kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05329-6
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- Article
3DVizSNP: a tool for rapidly visualizing missense mutations identified in high throughput experiments in iCn3D.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05370-5
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- Article
Deep learning-based classification model for GPR151 activator activity prediction.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05369-y
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- Article
Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05363-4
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- Article
TEMPROT: protein function annotation using transformers embeddings and homology search.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05375-0
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- Article