Found: 567
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HGGA: hierarchical guided genome assembler.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04701-2
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Sparse sliced inverse regression for high dimensional data analysis.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04700-3
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RSNET: inferring gene regulatory networks by a redundancy silencing and network enhancement technique.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04696-w
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- Article
A novel approach to predicting the synergy of anti-cancer drug combinations using document-based feature extraction.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04698-8
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CircMiMi: a stand-alone software for constructing circular RNA-microRNA-mRNA interactions across species.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04692-0
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A deep learning approach for orphan gene identification in moso bamboo (Phyllostachys edulis) based on the CNN + Transformer model.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04702-1
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scSemiAE: a deep model with semi-supervised learning for single-cell transcriptomics.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04703-0
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SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04695-x
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- Article
A comparison of topologically associating domain callers over mammals at high resolution.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04674-2
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- Article
Predicting circRNA-drug sensitivity associations via graph attention auto-encoder.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04694-y
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KnotAli: informed energy minimization through the use of evolutionary information.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04673-3
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- Article
tReasure: R-based GUI package analyzing tRNA expression profiles from small RNA sequencing data.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04691-1
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- Article
Exploration of chemical space with partial labeled noisy student self-training and self-supervised graph embedding.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04681-3
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- Article
Expression-based species deconvolution and realignment removes misalignment error in multispecies single-cell data.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04676-0
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GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04629-7
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- Article
TCR-L: an analysis tool for evaluating the association between the T-cell receptor repertoire and clinical phenotypes.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04690-2
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- Article
Comparison of five supervised feature selection algorithms leading to top features and gene signatures from multi-omics data in cancer.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04678-y
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- Article
Accurate and highly interpretable prediction of gene expression from histone modifications.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04687-x
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- Article
Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04685-z
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- Article
AutoCoV: tracking the early spread of COVID-19 in terms of the spatial and temporal patterns from embedding space by K-mer based deep learning.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04679-x
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- Article
SNARER: new molecular descriptors for SNARE proteins classification.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04677-z
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- Article
Estimating RNA dynamics using one time point for one sample in a single-pulse metabolic labeling experiment.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04672-4
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- Article
Accurate and highly interpretable prediction of gene expression from histone modifications.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04687-x
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- Publication type:
- Article
A Bayesian framework to integrate multi-level genome-scale data for Autism risk gene prioritization.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04616-y
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Benchmarking for biomedical natural language processing tasks with a domain specific ALBERT.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04688-w
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- Article
RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04686-y
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- Article
Computationally repurposing drugs for breast cancer subtypes using a network-based approach.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04662-6
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- Article
Fast and robust imputation for miRNA expression data using constrained least squares.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04656-4
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- Article
RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04686-y
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- Publication type:
- Article
DISTEMA: distance map-based estimation of single protein model accuracy with attentive 2D convolutional neural network.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04683-1
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- Article
Deep clustering of small molecules at large-scale via variational autoencoder embedding and K-means.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04667-1
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- Article
Enhancing predictions of antimicrobial resistance of pathogens by expanding the potential resistance gene repertoire using a pan-genome-based feature selection approach.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04666-2
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- Publication type:
- Article
Computationally repurposing drugs for breast cancer subtypes using a network-based approach.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04662-6
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- Publication type:
- Article
Integrative analysis of mutated genes and mutational processes reveals novel mutational biomarkers in colorectal cancer.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04652-8
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- Article
Mass recalibration for desorption electrospray ionization mass spectrometry imaging using endogenous reference ions.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04671-5
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Application of unsupervised deep learning algorithms for identification of specific clusters of chronic cough patients from EMR data.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04680-4
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- Article
De novo identification of maximally deregulated subnetworks based on multi-omics data with DeRegNet.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04670-6
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- Article
LPInsider: a webserver for lncRNA–protein interaction extraction from the literature.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04665-3
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- Article
BreakAlign: a Perl program to align chimaeric (split) genomic NGS reads and allow visual confirmation of novel retroviral integrations.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04621-1
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- Article
Discovery of moiety preference by Shapley value in protein kinase family using random forest models.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04663-5
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- Article
Answering medical questions in Chinese using automatically mined knowledge and deep neural networks: an end-to-end solution.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04658-2
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- Article
COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04632-y
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- Article
DualGCN: a dual graph convolutional network model to predict cancer drug response.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04664-4
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- Publication type:
- Article
A comparison of topologically associating domain callers over mammals at high resolution.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04674-2
- By:
- Publication type:
- Article
HGDTI: predicting drug-target interaction by using information aggregation based on heterogeneous graph neural network.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04655-5
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- Publication type:
- Article
Identification of multimodal brain imaging association via a parameter decomposition based sparse multi-view canonical correlation analysis method.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04669-z
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- Publication type:
- Article
Towards a robust out-of-the-box neural network model for genomic data.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04660-8
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- Article
Bioinformatics analysis reveals immune prognostic markers for overall survival of colorectal cancer patients: a novel machine learning survival predictive system.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04657-3
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- Publication type:
- Article
Algorithm for DNA sequence assembly by quantum annealing.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04661-7
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- Publication type:
- Article
RGMQL: scalable and interoperable computing of heterogeneous omics big data and metadata in R/Bioconductor.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04648-4
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- Article