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NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2579-2
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- Article
hoDCA: higher order direct-coupling analysis.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2583-6
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- Article
Time-lagged Ordered Lasso for network inference.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2558-7
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- Article
Towards practical privacy-preserving genome-wide association study.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2541-3
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- Article
Antimicrobial peptide similarity and classification through rough set theory using physicochemical boundaries.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2514-6
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- Article
Web-based design and analysis tools for CRISPR base editing.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2585-4
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- Article
Degeneracy and genetic assimilation in RNA evolution.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2497-3
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- Article
SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2577-4
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- Article
MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2574-7
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- Article
FELLA: an R package to enrich metabolomics data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2487-5
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- Article
Capturing context-specific regulation in molecular interaction networks.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2513-7
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- Article
Fast and scalable neural embedding models for biomedical sentence classification.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2496-4
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GLUE: a flexible software system for virus sequence data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2459-9
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- Article
Correction to: Evaluating the impact of topological protein features on the negative examples selection.
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- 2018
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- Publication type:
- Correction Notice
Protein complexes identification based on go attributed network embedding.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2555-x
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- Article
Measures of co-expression for improved function prediction of long non-coding RNAs.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2546-y
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- Publication type:
- Article
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2486-6
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- Article
Analyzing the similarity of samples and genes by MG-PCC algorithm, t-SNE-SS and t-SNE-SG maps.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2495-5
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- Article
GOnet: a tool for interactive Gene Ontology analysis.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2533-3
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- Article
Shortest path counting in probabilistic biological networks.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2480-z
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- Publication type:
- Article
NIPTeR: an R package for fast and accurate trisomy prediction in non-invasive prenatal testing.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2557-8
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- Article
Gene co-expression networks from RNA sequencing of dairy cattle identifies genes and pathways affecting feed efficiency.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2553-z
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- Article
COMBImage: a modular parallel processing framework for pairwise drug combination analysis that quantifies temporal changes in label-free video microscopy movies.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2458-x
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- Publication type:
- Article
PASNet: pathway-associated sparse deep neural network for prognosis prediction from high-throughput data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2500-z
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- Article
Towards a supervised classification of neocortical interneuron morphologies.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2470-1
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- Article
Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2438-1
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- Article
Accelerating a cross-correlation score function to search modifications using a single GPU.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2559-6
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- Article
Subject level clustering using a negative binomial model for small transcriptomic studies.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2556-9
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- Publication type:
- Article
VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2532-4
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- Article
A statistical framework for detecting mislabeled and contaminated samples using shallow-depth sequence data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2512-8
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- Article
A multi-omics approach for identifying important pathways and genes in human cancer.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2476-8
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- Article
A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2453-2
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- Article
BiSpark: a Spark-based highly scalable aligner for bisulfite sequencing data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2498-2
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- Article
A new sequence logo plot to highlight enrichment and depletion.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2489-3
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- Article
Using Kinect to classify Parkinson's disease stages related to severity of gait impairment.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2488-4
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- Article
Structure-function analysis of Sedolisins: evolution of tripeptidyl peptidase and endopeptidase subfamilies in fungi.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2404-y
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- Article
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2472-z
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- Article
Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2499-1
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- Article
Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2479-5
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- Publication type:
- Article
SyNDI: synchronous network data integration framework.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2426-5
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- Article
Automated selection of homologs to track the evolutionary history of proteins.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2457-y
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- Article
Learning protein binding affinity using privileged information.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2448-z
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- Publication type:
- Article
Representativeness of variation benchmark datasets.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2478-6
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- Publication type:
- Article
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2485-7
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- Publication type:
- Article
PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2494-6
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- Article
Learning the optimal scale for GWAS through hierarchical SNP aggregation.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2475-9
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- Article
Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2446-1
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- Article
dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2493-7
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- Publication type:
- Article
Correction to: cuRnet: an R package for graph traversing on GPU.
- Published in:
- 2018
- By:
- Publication type:
- Correction Notice
SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2501-y
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- Publication type:
- Article