Found: 47
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CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
- Published in:
- Bioinformatics, 2022, v. 38, n. 3, p. 720, doi. 10.1093/bioinformatics/btab744
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- Article
Erratum to: GADGETS: a genetic algorithm for detecting epistasis using nuclear families.
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- 2022
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- Correction Notice
Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper.
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- Bioinformatics, 2022, v. 38, n. 3, p. 612, doi. 10.1093/bioinformatics/btab752
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- Article
Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs.
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- Bioinformatics, 2022, v. 38, n. 3, p. 770, doi. 10.1093/bioinformatics/btab751
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- Article
Population-scale detection of non-reference sequence variants using colored de Bruijn graphs.
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- Bioinformatics, 2022, v. 38, n. 3, p. 604, doi. 10.1093/bioinformatics/btab749
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- Article
CpG Transformer for imputation of single-cell methylomes.
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- Bioinformatics, 2022, v. 38, n. 3, p. 597, doi. 10.1093/bioinformatics/btab746
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- Article
ORT: a workflow linking genome-scale metabolic models with reactive transport codes.
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- Bioinformatics, 2022, v. 38, n. 3, p. 778, doi. 10.1093/bioinformatics/btab753
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- Article
preciseTAD: a transfer learning framework for 3D domain boundary prediction at base-pair resolution.
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- Bioinformatics, 2022, v. 38, n. 3, p. 621, doi. 10.1093/bioinformatics/btab743
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- Article
EDCNN: identification of genome-wide RNA-binding proteins using evolutionary deep convolutional neural network.
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- Bioinformatics, 2022, v. 38, n. 3, p. 678, doi. 10.1093/bioinformatics/btab739
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- Article
ConsAlifold: considering RNA structural alignments improves prediction accuracy of RNA consensus secondary structures.
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- Bioinformatics, 2022, v. 38, n. 3, p. 710, doi. 10.1093/bioinformatics/btab738
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- Article
DeepTrio: a ternary prediction system for protein–protein interaction using mask multiple parallel convolutional neural networks.
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- Bioinformatics, 2022, v. 38, n. 3, p. 694, doi. 10.1093/bioinformatics/btab737
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- Article
computational methodology to diagnose sequence-variant dynamic perturbations by comparing atomic protein structures.
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- Bioinformatics, 2022, v. 38, n. 3, p. 703, doi. 10.1093/bioinformatics/btab736
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- Article
Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis.
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- Bioinformatics, 2022, v. 38, n. 3, p. 763, doi. 10.1093/bioinformatics/btab735
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- Article
TargetNet: functional microRNA target prediction with deep neural networks.
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- Bioinformatics, 2022, v. 38, n. 3, p. 671, doi. 10.1093/bioinformatics/btab733
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- Publication type:
- Article
DULoc: quantitatively unmixing protein subcellular location patterns in immunofluorescence images based on deep learning features.
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- Bioinformatics, 2022, v. 38, n. 3, p. 827, doi. 10.1093/bioinformatics/btab730
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- Article
HPODNets: deep graph convolutional networks for predicting human protein–phenotype associations.
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- Bioinformatics, 2022, v. 38, n. 3, p. 799, doi. 10.1093/bioinformatics/btab729
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- Publication type:
- Article
GPSmatch: an R package for comparing Genomic-binding Profile Similarity among transcriptional regulators using customizable databases.
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- Bioinformatics, 2022, v. 38, n. 3, p. 853, doi. 10.1093/bioinformatics/btab728
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- Publication type:
- Article
PMLB v1.0: an open-source dataset collection for benchmarking machine learning methods.
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- Bioinformatics, 2022, v. 38, n. 3, p. 878, doi. 10.1093/bioinformatics/btab727
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- Article
Neuron segmentation using 3D wavelet integrated encoder–decoder network.
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- Bioinformatics, 2022, v. 38, n. 3, p. 809, doi. 10.1093/bioinformatics/btab716
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- Publication type:
- Article
HyperAttentionDTI: improving drug–protein interaction prediction by sequence-based deep learning with attention mechanism.
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- Bioinformatics, 2022, v. 38, n. 3, p. 655, doi. 10.1093/bioinformatics/btab715
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- Article
Multi-instance learning of graph neural networks for aqueous pKa prediction.
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- Bioinformatics, 2022, v. 38, n. 3, p. 792, doi. 10.1093/bioinformatics/btab714
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- Article
BERT-Kcr: prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models.
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- Bioinformatics, 2022, v. 38, n. 3, p. 648, doi. 10.1093/bioinformatics/btab712
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- Article
ImmuCellAI-mouse: a tool for comprehensive prediction of mouse immune cell abundance and immune microenvironment depiction.
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- Bioinformatics, 2022, v. 38, n. 3, p. 785, doi. 10.1093/bioinformatics/btab711
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- Article
Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.
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- Bioinformatics, 2022, v. 38, n. 3, p. 856, doi. 10.1093/bioinformatics/btab725
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- Article
dsRBPBind: modeling the effect of RNA secondary structure on double-stranded RNA–protein binding.
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- Bioinformatics, 2022, v. 38, n. 3, p. 687, doi. 10.1093/bioinformatics/btab724
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- Article
AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees.
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- Bioinformatics, 2022, v. 38, n. 3, p. 663, doi. 10.1093/bioinformatics/btab723
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- Article
Multimodal medical image fusion using adaptive co-occurrence filter-based decomposition optimization model.
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- Bioinformatics, 2022, v. 38, n. 3, p. 818, doi. 10.1093/bioinformatics/btab721
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- Publication type:
- Article
BalLeRMix+: mixture model approaches for robust joint identification of both positive selection and long-term balancing selection.
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- Bioinformatics, 2022, v. 38, n. 3, p. 861, doi. 10.1093/bioinformatics/btab720
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- Article
WGA-LP: a pipeline for whole genome assembly of contaminated reads.
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- Bioinformatics, 2022, v. 38, n. 3, p. 846, doi. 10.1093/bioinformatics/btab719
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- Article
Accurate inference of gene regulatory interactions from spatial gene expression with deep contrastive learning.
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- Bioinformatics, 2022, v. 38, n. 3, p. 746, doi. 10.1093/bioinformatics/btab718
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- Article
PMCE: efficient inference of expressive models of cancer evolution with high prognostic power.
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- Bioinformatics, 2022, v. 38, n. 3, p. 754, doi. 10.1093/bioinformatics/btab717
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- Article
vcf2gwas: Python API for comprehensive GWAS analysis using GEMMA.
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- Bioinformatics, 2022, v. 38, n. 3, p. 839, doi. 10.1093/bioinformatics/btab710
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- Publication type:
- Article
FindNonCoding: rapid and simple detection of non-coding RNAs in genomes.
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- Bioinformatics, 2022, v. 38, n. 3, p. 841, doi. 10.1093/bioinformatics/btab708
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- Article
Rediscover: an R package to identify mutually exclusive mutations.
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- Bioinformatics, 2022, v. 38, n. 3, p. 844, doi. 10.1093/bioinformatics/btab709
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- Publication type:
- Article
MCRL: using a reference library to compress a metagenome into a non-redundant list of sequences, considering viruses as a case study.
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- Bioinformatics, 2022, v. 38, n. 3, p. 631, doi. 10.1093/bioinformatics/btab703
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- Publication type:
- Article
BioVAE: a pre-trained latent variable language model for biomedical text mining.
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- Bioinformatics, 2022, v. 38, n. 3, p. 872, doi. 10.1093/bioinformatics/btab702
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- Publication type:
- Article
MS2AI: automated repurposing of public peptide LC-MS data for machine learning applications.
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- Bioinformatics, 2022, v. 38, n. 3, p. 875, doi. 10.1093/bioinformatics/btab701
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- Publication type:
- Article
scMRA: a robust deep learning method to annotate scRNA-seq data with multiple reference datasets.
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- Bioinformatics, 2022, v. 38, n. 3, p. 738, doi. 10.1093/bioinformatics/btab700
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- Article
WikiNetworks: translating manually created biological pathways for topological analysis.
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- Bioinformatics, 2022, v. 38, n. 3, p. 869, doi. 10.1093/bioinformatics/btab699
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- Article
MuWU: Mutant-seq library analysis and annotation.
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- Bioinformatics, 2022, v. 38, n. 3, p. 837, doi. 10.1093/bioinformatics/btab679
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- Publication type:
- Article
ShinyArchR.UiO: user-friendly,integrative and open-source tool for visualization of single-cell ATAC-seq data using ArchR.
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- Bioinformatics, 2022, v. 38, n. 3, p. 834, doi. 10.1093/bioinformatics/btab680
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- Article
Multiomix: a cloud-based platform to infer cancer genomic and epigenomic events associated with gene expression modulation.
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- Bioinformatics, 2022, v. 38, n. 3, p. 866, doi. 10.1093/bioinformatics/btab678
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- Publication type:
- Article
AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge.
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- Bioinformatics, 2022, v. 38, n. 3, p. 849, doi. 10.1093/bioinformatics/btab674
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- Publication type:
- Article
systems biology simulation core library.
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- Bioinformatics, 2022, v. 38, n. 3, p. 864, doi. 10.1093/bioinformatics/btab669
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- Publication type:
- Article
Corrigendum to: Decombinator V4: an improved AIRR-C compliant software package for T-cell receptor sequence annotation.
- Published in:
- 2022
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- Publication type:
- Correction Notice
DiscoRhythm: an easy-to-use web application and R package for discovering rhythmicity.
- Published in:
- Bioinformatics, 2022, v. 38, n. 3, p. 882, doi. 10.1093/bioinformatics/btab517
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- Publication type:
- Article
Adversarial generation of gene expression data.
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- Bioinformatics, 2022, v. 38, n. 3, p. 730, doi. 10.1093/bioinformatics/btab035
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- Publication type:
- Article