Found: 36
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Comprehensive comparison of two types of algorithm for circRNA detection from short-read RNA-Seq.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3037, doi. 10.1093/bioinformatics/btac302
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GEInfo: an R package for gene–environment interaction analysis incorporating prior information.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3139, doi. 10.1093/bioinformatics/btac301
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- Article
deepSimDEF: deep neural embeddings of gene products and gene ontology terms for functional analysis of genes.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3051, doi. 10.1093/bioinformatics/btac304
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- Article
ATHENA: analysis of tumor heterogeneity from spatial omics measurements.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3151, doi. 10.1093/bioinformatics/btac303
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- Article
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3128, doi. 10.1093/bioinformatics/btac299
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- Article
TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3149, doi. 10.1093/bioinformatics/btac291
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- Article
HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs.
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- Bioinformatics, 2022, v. 38, n. 11, p. 2973, doi. 10.1093/bioinformatics/btac295
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- Article
scSGL: kernelized signed graph learning for single-cell gene regulatory network inference.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3011, doi. 10.1093/bioinformatics/btac288
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Methylartist: tools for visualizing modified bases from nanopore sequence data.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3109, doi. 10.1093/bioinformatics/btac292
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Simulation and annotation of global acronyms.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3136, doi. 10.1093/bioinformatics/btac298
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GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3020, doi. 10.1093/bioinformatics/btac290
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- Article
Underground metabolism as a rich reservoir for pathway engineering.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3070, doi. 10.1093/bioinformatics/btac282
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- Article
KIMGENS: a novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3044, doi. 10.1093/bioinformatics/btac293
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- Article
SimPlot++: a Python application for representing sequence similarity and detecting recombination.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3118, doi. 10.1093/bioinformatics/btac287
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- Article
Correction to: MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3154, doi. 10.1093/bioinformatics/btac285
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- Article
Continuous chromatin state feature annotation of the human epigenome.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3029, doi. 10.1093/bioinformatics/btac283
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- Article
CnnPOGTP: a novel CNN-based predictor for identifying the optimal growth temperatures of prokaryotes using only genomic k-mers distribution.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3106, doi. 10.1093/bioinformatics/btac289
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- Article
iSFun: an R package for integrative dimension reduction analysis.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3134, doi. 10.1093/bioinformatics/btac281
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- Article
Deephos: predicted spectral database search for TMT-labeled phosphopeptides and its false discovery rate estimation.
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- Bioinformatics, 2022, v. 38, n. 11, p. 2980, doi. 10.1093/bioinformatics/btac280
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- Article
Robust and accurate estimation of cellular fraction from tissue omics data via ensemble deconvolution.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3004, doi. 10.1093/bioinformatics/btac279
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- Article
PltDB: a blood platelets-based gene expression database for disease investigation.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3143, doi. 10.1093/bioinformatics/btac278
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Quantification of transcription noise's impact on cell fate commitment with digital resolutions.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3062, doi. 10.1093/bioinformatics/btac277
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Kernel-based hierarchical structural component models for pathway analysis.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3078, doi. 10.1093/bioinformatics/btac276
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- Article
atlas of human viruses provides new insights into diversity and tissue tropism of human viruses.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3087, doi. 10.1093/bioinformatics/btac275
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- Article
DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3113, doi. 10.1093/bioinformatics/btac274
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DrugCVar: a platform for evidence-based drug annotation for genetic variants in cancer.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3094, doi. 10.1093/bioinformatics/btac273
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ENDS of assumptions: an online tool for the epistemic non-parametric drug–response scoring.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3132, doi. 10.1093/bioinformatics/btac217
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- Article
scSampler: fast diversity-preserving subsampling of large-scale single-cell transcriptomic data.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3126, doi. 10.1093/bioinformatics/btac271
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teff: estimation of Treatment EFFects on transcriptomic data using causal random forest.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3124, doi. 10.1093/bioinformatics/btac269
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Steer'n'Detect: fast 2D template detection with accurate orientation estimation.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3146, doi. 10.1093/bioinformatics/btac270
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spicyR: spatial analysis of in situ cytometry data in R.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3099, doi. 10.1093/bioinformatics/btac268
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STAAR workflow: a cloud-based workflow for scalable and reproducible rare variant analysis.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3116, doi. 10.1093/bioinformatics/btac272
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Scoring protein sequence alignments using deep learning.
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- Bioinformatics, 2022, v. 38, n. 11, p. 2988, doi. 10.1093/bioinformatics/btac210
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scGraph: a graph neural network-based approach to automatically identify cell types.
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- Bioinformatics, 2022, v. 38, n. 11, p. 2996, doi. 10.1093/bioinformatics/btac199
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A3D database: structure-based predictions of protein aggregation for the human proteome.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3121, doi. 10.1093/bioinformatics/btac215
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ELIXIR biovalidator for semantic validation of life science metadata.
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- Bioinformatics, 2022, v. 38, n. 11, p. 3141, doi. 10.1093/bioinformatics/btac195
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