Found: 52
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projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3592, doi. 10.1093/bioinformatics/btaa183
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GlycoGlyph: a glycan visualizing, drawing and naming application.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3613, doi. 10.1093/bioinformatics/btaa190
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Projected t-SNE for batch correction.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3522, doi. 10.1093/bioinformatics/btaa189
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LogoJS: a Javascript package for creating sequence logos and embedding them in web applications.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3573, doi. 10.1093/bioinformatics/btaa192
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- Article
CRiSP: accurate structure prediction of disulfide-rich peptides with cystine-specific sequence alignment and machine learning.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3385, doi. 10.1093/bioinformatics/btaa193
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- Article
Potential covalent drugs targeting the main protease of the SARS-CoV-2 coronavirus.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3295, doi. 10.1093/bioinformatics/btaa224
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powmic: an R package for power assessment in microbiome case–control studies.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3563, doi. 10.1093/bioinformatics/btaa197
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TCRBuilder: multi-state T-cell receptor structure prediction.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3580, doi. 10.1093/bioinformatics/btaa194
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VISAR: an interactive tool for dissecting chemical features learned by deep neural network QSAR models.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3610, doi. 10.1093/bioinformatics/btaa187
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COMER2: GPU-accelerated sensitive and specific homology searches.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3570, doi. 10.1093/bioinformatics/btaa185
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A blind and independent benchmark study for detecting differeally methylated regions in plants.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3314, doi. 10.1093/bioinformatics/btaa191
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- Article
The Glycine Receptor Allosteric Ligands Library (GRALL).
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- Bioinformatics, 2020, v. 36, n. 11, p. 3379, doi. 10.1093/bioinformatics/btaa170
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Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3365, doi. 10.1093/bioinformatics/btaa177
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rMSIproc: an R package for mass spectrometry imaging data processing.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3618, doi. 10.1093/bioinformatics/btaa142
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- Article
tugHall: a simulator of cancer-cell evolution based on the hallmarks of cancer and tumor-related genes.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3597, doi. 10.1093/bioinformatics/btaa182
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GraphBin: refined binning of metagenomic contigs using assembly graphs.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3307, doi. 10.1093/bioinformatics/btaa180
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- Article
m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m<sup>7</sup>G) sites in human.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3528, doi. 10.1093/bioinformatics/btaa178
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- Article
RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3299, doi. 10.1093/bioinformatics/btaa172
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- Article
MIXnorm: normalizing RNA-seq data from formalin-fixed paraffin-embedded samples.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3401, doi. 10.1093/bioinformatics/btaa153
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- Article
CloudASM: an ultra-efficient cloud-based pipeline for mapping allele-specific DNA methylation.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3558, doi. 10.1093/bioinformatics/btaa149
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IgGeneUsage: differential gene usage in immune repertoires.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3590, doi. 10.1093/bioinformatics/btaa174
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primirTSS: an R package for identifying cell-specific microRNA transcription start sites.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3605, doi. 10.1093/bioinformatics/btaa173
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Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3561, doi. 10.1093/bioinformatics/btaa171
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iATC-FRAKEL: a simple multi-label web server for recognizing anatomical therapeutic chemical classes of drugs with their fingerprints only.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3568, doi. 10.1093/bioinformatics/btaa166
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grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3607, doi. 10.1093/bioinformatics/btaa167
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ProCaff: protein–carbohydrate complex binding affinity database.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3615, doi. 10.1093/bioinformatics/btaa141
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CPS analysis: self-contained validation of biomedical data clustering.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3516, doi. 10.1093/bioinformatics/btaa165
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- Article
forgeNet: a graph deep neural network model using tree-based ensemble classifiers for feature graph construction.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3507, doi. 10.1093/bioinformatics/btaa164
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DeCoDe: degenerate codon design for complete protein-coding DNA libraries.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3357, doi. 10.1093/bioinformatics/btaa162
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HLPpred-Fuse: improved and robust prediction of hemolytic peptide and its activity by fusing multiple feature representation.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3350, doi. 10.1093/bioinformatics/btaa160
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- Article
SphereCon—a method for precise estimation of residue relative solvent accessible area from limited structural information.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3372, doi. 10.1093/bioinformatics/btaa159
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immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3594, doi. 10.1093/bioinformatics/btaa158
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SCLpred-EMS: subcellular localization prediction of endomembrane system and secretory pathway proteins by Deep N-to-1 Convolutional Neural Networks.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3343, doi. 10.1093/bioinformatics/btaa156
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iMRM: a platform for simultaneously identifying multiple kinds of RNA modifications.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3336, doi. 10.1093/bioinformatics/btaa155
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nanoTRON: a Picasso module for MLP-based classification of super-resolution data.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3620, doi. 10.1093/bioinformatics/btaa154
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ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3578, doi. 10.1093/bioinformatics/btaa147
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Feature set optimization in biomarker discovery from genome-scale data.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3393, doi. 10.1093/bioinformatics/btaa144
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2DImpute: imputation in single-cell RNA-seq data from correlations in two dimensions.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3588, doi. 10.1093/bioinformatics/btaa148
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CRAMER: a lightweight, highly customizable web-based genome browser supporting multiple visualization instances.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3556, doi. 10.1093/bioinformatics/btaa146
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Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3552, doi. 10.1093/bioinformatics/btaa145
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- Article
DNA4mC-LIP: a linear integration method to identify N4-methylcytosine site in multiple species.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3327, doi. 10.1093/bioinformatics/btaa143
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MESA: automated assessment of synthetic DNA fragments and simulation of DNA synthesis, storage, sequencing and PCR errors.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3322, doi. 10.1093/bioinformatics/btaa140
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Breeze: an integrated quality control and data analysis application for high-throughput drug screening.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3602, doi. 10.1093/bioinformatics/btaa138
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Ensemble learning for classifying single-cell data and projection across reference atlases.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3585, doi. 10.1093/bioinformatics/btaa137
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Bio2Rxn: sequence-based enzymatic reaction predictions by a consensus strategy.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3600, doi. 10.1093/bioinformatics/btaa135
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Leitmotif: protein motif scanning 2.0.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3566, doi. 10.1093/bioinformatics/btaa133
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ConfID: an analytical method for conformational characterization of small molecules using molecular dynamics trajectories.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3576, doi. 10.1093/bioinformatics/btaa130
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V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3582, doi. 10.1093/bioinformatics/btaa128
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Discovering and interpreting transcriptomic drivers of imaging traits using neural networks.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3537, doi. 10.1093/bioinformatics/btaa126
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dv-trio: a family-based variant calling pipeline using DeepVariant.
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- Bioinformatics, 2020, v. 36, n. 11, p. 3549, doi. 10.1093/bioinformatics/btaa116
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