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ISMB 2010 Organization.
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- Bioinformatics, 2010, v. 26, n. 12, p. i2, doi. 10.1093/bioinformatics/btq246
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- Article
TRStalker: an efficient heuristic for finding fuzzy tandem repeats.
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- Bioinformatics, 2010, v. 26, n. 12, p. i358, doi. 10.1093/bioinformatics/btq209
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Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation.
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- Bioinformatics, 2010, v. 26, n. 12, p. i168, doi. 10.1093/bioinformatics/btq189
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Reconstruction of the neuromuscular junction connectome.
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- Bioinformatics, 2010, v. 26, n. 12, p. i64, doi. 10.1093/bioinformatics/btq179
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Modularity and directionality in genetic interaction maps.
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- Bioinformatics, 2010, v. 26, n. 12, p. i228, doi. 10.1093/bioinformatics/btq197
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Author Index.
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- Bioinformatics, 2010, v. 26, n. 12, p. i407, doi. 10.1093/bioinformatics/btq256
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- Article
Inference of combinatorial Boolean rules of synergistic gene sets from cancer microarray datasets.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1506, doi. 10.1093/bioinformatics/btq207
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Multi-population GWA mapping via multi-task regularized regression.
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- Bioinformatics, 2010, v. 26, n. 12, p. i208, doi. 10.1093/bioinformatics/btq191
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Discovering transcriptional modules by Bayesian data integration.
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- Bioinformatics, 2010, v. 26, n. 12, p. i158, doi. 10.1093/bioinformatics/btq210
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SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images.
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- Bioinformatics, 2010, v. 26, n. 12, p. i47, doi. 10.1093/bioinformatics/btq172
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PepC: proteomics software for identifying differentially expressed proteins based on spectral counting.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1574, doi. 10.1093/bioinformatics/btq171
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As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets.
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- Bioinformatics, 2010, v. 26, n. 12, p. i57, doi. 10.1093/bioinformatics/btq219
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- Article
ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1572, doi. 10.1093/bioinformatics/btq170
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- Article
Optimal algorithms for haplotype assembly from whole-genome sequence data.
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- Bioinformatics, 2010, v. 26, n. 12, p. i183, doi. 10.1093/bioinformatics/btq215
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- Article
FABIA: factor analysis for bicluster acquisition.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1520, doi. 10.1093/bioinformatics/btq227
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- Article
Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework.
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- Bioinformatics, 2010, v. 26, n. 12, p. i246, doi. 10.1093/bioinformatics/btq176
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- Article
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters.
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- Bioinformatics, 2010, v. 26, n. 12, p. i124, doi. 10.1093/bioinformatics/btq202
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TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1566, doi. 10.1093/bioinformatics/btq233
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- Article
Low-homology protein threading.
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- Bioinformatics, 2010, v. 26, n. 12, p. i294, doi. 10.1093/bioinformatics/btq192
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- Article
Inferring combinatorial association logic networks in multimodal genome-wide screens.
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- Bioinformatics, 2010, v. 26, n. 12, p. i149, doi. 10.1093/bioinformatics/btq211
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Editorial.
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- Bioinformatics, 2010, v. 26, n. 12, p. i1, doi. 10.1093/bioinformatics/btq238
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LCE: a link-based cluster ensemble method for improved gene expression data analysis.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1513, doi. 10.1093/bioinformatics/btq226
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- Article
Finding metabolic pathways using atom tracking.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1548, doi. 10.1093/bioinformatics/btq223
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Ligand-binding site prediction of proteins based on known fragment–fragment interactions.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1493, doi. 10.1093/bioinformatics/btq232
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Supersplat—spliced RNA-seq alignment.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1500, doi. 10.1093/bioinformatics/btq206
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Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing.
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- Bioinformatics, 2010, v. 26, n. 12, p. i7, doi. 10.1093/bioinformatics/btq220
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A spectral graph theoretic approach to quantification and calibration of collective morphological differences in cell images.
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- Bioinformatics, 2010, v. 26, n. 12, p. i29, doi. 10.1093/bioinformatics/btq194
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Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.
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- Bioinformatics, 2010, v. 26, n. 12, p. i350, doi. 10.1093/bioinformatics/btq216
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Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1528, doi. 10.1093/bioinformatics/btq141
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- Article
TEAM: efficient two-locus epistasis tests in human genome-wide association study.
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- Bioinformatics, 2010, v. 26, n. 12, p. i217, doi. 10.1093/bioinformatics/btq186
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- Article
Markov dynamic models for long-timescale protein motion.
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- Bioinformatics, 2010, v. 26, n. 12, p. i269, doi. 10.1093/bioinformatics/btq177
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Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos.
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- Bioinformatics, 2010, v. 26, n. 12, p. i13, doi. 10.1093/bioinformatics/btq190
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- Article
Fragment-free approach to protein folding using conditional neural fields.
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- Bioinformatics, 2010, v. 26, n. 12, p. i310, doi. 10.1093/bioinformatics/btq193
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- Article
A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps.
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- Bioinformatics, 2010, v. 26, n. 12, p. i261, doi. 10.1093/bioinformatics/btq201
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MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structures.
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- Bioinformatics, 2010, v. 26, n. 12, p. i301, doi. 10.1093/bioinformatics/btq195
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Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model.
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- Bioinformatics, 2010, v. 26, n. 12, p. i255, doi. 10.1093/bioinformatics/btq183
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- Article
A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data.
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- Bioinformatics, 2010, v. 26, n. 12, p. i334, doi. 10.1093/bioinformatics/btq175
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- Article
Sparse multitask regression for identifying common mechanism of response to therapeutic targets.
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- Bioinformatics, 2010, v. 26, n. 12, p. i97, doi. 10.1093/bioinformatics/btq181
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PathText: a text mining integrator for biological pathway visualizations.
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- Bioinformatics, 2010, v. 26, n. 12, p. i374, doi. 10.1093/bioinformatics/btq221
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Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic trees.
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- Bioinformatics, 2010, v. 26, n. 12, p. i140, doi. 10.1093/bioinformatics/btq198
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Computing biological functions using BioΨ, a formal description of biological processes based on elementary bricks of actions.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1542, doi. 10.1093/bioinformatics/btq169
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- Article
Robust unmixing of tumor states in array comparative genomic hybridization data.
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- Bioinformatics, 2010, v. 26, n. 12, p. i106, doi. 10.1093/bioinformatics/btq213
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Efficient identification of identical-by-descent status in pedigrees with many untyped individuals.
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- Bioinformatics, 2010, v. 26, n. 12, p. i191, doi. 10.1093/bioinformatics/btq222
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- Article
Deuteration distribution estimation with improved sequence coverage for HX/MS experiments.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1535, doi. 10.1093/bioinformatics/btq165
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- Article
A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.
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- Bioinformatics, 2010, v. 26, n. 12, p. 1556, doi. 10.1093/bioinformatics/btq225
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Assessing the functional coherence of gene sets with metrics based on the Gene Ontology graph.
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- Bioinformatics, 2010, v. 26, n. 12, p. i79, doi. 10.1093/bioinformatics/btq203
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- Article
Efficient genome ancestry inference in complex pedigrees with inbreeding.
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- Bioinformatics, 2010, v. 26, n. 12, p. i199, doi. 10.1093/bioinformatics/btq187
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A statistical method for the detection of variants from next-generation resequencing of DNA pools.
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- Bioinformatics, 2010, v. 26, n. 12, p. i318, doi. 10.1093/bioinformatics/btq214
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- Article
Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model.
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- Bioinformatics, 2010, v. 26, n. 12, p. i38, doi. 10.1093/bioinformatics/btq212
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VARiD: A variation detection framework for color-space and letter-space platforms.
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- Bioinformatics, 2010, v. 26, n. 12, p. i343, doi. 10.1093/bioinformatics/btq184
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- Article