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Refinement of NMR-determined protein structures with database derived mean-force potentials.
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- Proteins, 2007, v. 68, n. 1, p. 232, doi. 10.1002/prot.21358
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Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm.
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- Proteins, 2007, v. 68, n. 1, p. 294, doi. 10.1002/prot.21387
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A simple way to compute protein dynamics without a mechanical model.
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- Proteins, 2007, v. 68, n. 1, p. 34, doi. 10.1002/prot.21430
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Proton pathways and H<sup>+</sup>/Cl<sup>−</sup> stoichiometry in bacterial chloride transporters.
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- Proteins, 2007, v. 68, n. 1, p. 26, doi. 10.1002/prot.21441
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Probe-dependent and nonexponential relaxation kinetics: Unreliable signatures of downhill protein folding.
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- Proteins, 2007, v. 68, n. 1, p. 205, doi. 10.1002/prot.21342
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Functional consequences of exchanging domains between LacI and PurR are mediated by the intervening linker sequence.
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- Proteins, 2007, v. 68, n. 1, p. 375, doi. 10.1002/prot.21412
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Accuracy of binding mode prediction with a cascadic stochastic tunneling method.
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- Proteins, 2007, v. 68, n. 1, p. 195, doi. 10.1002/prot.21382
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Computational analysis of the S. cerevisiae proteome reveals the function and cellular localization of the least and most amyloidogenic proteins.
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- Proteins, 2007, v. 68, n. 1, p. 273, doi. 10.1002/prot.21427
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Molecular definitions of fatty acid hydroxylases in Arabidopsis thaliana.
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- Proteins, 2007, v. 68, n. 1, p. 279, doi. 10.1002/prot.21335
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Characterization of Salmonella typhimurium YegS, a putative lipid kinase homologous to eukaryotic sphingosine and diacylglycerol kinases.
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- Proteins, 2007, v. 68, n. 1, p. 13, doi. 10.1002/prot.21386
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Structural prediction of the β-domain of metallothionein-3 by molecular dynamics simulation.
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- Proteins, 2007, v. 68, n. 1, p. 255, doi. 10.1002/prot.21404
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Dynamic α-helices: Conformations that do not conform.
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- Proteins, 2007, v. 68, n. 1, p. 109, doi. 10.1002/prot.21328
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Development and benchmarking of TASSER<sup>iter</sup> for the iterative improvement of protein structure predictions.
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- Proteins, 2007, v. 68, n. 1, p. 39, doi. 10.1002/prot.21440
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Prediction of folding transition-state position (β<sub>T</sub>) of small, two-state proteins from local secondary structure content.
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- Proteins, 2007, v. 68, n. 1, p. 218, doi. 10.1002/prot.21411
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SVM-Cabins: Prediction of solvent accessibility using accumulation cutoff set and support vector machine.
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- Proteins, 2007, v. 68, n. 1, p. 82, doi. 10.1002/prot.21422
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A 'moving metal mechanism' for substrate cleavage by the DNA repair endonuclease APE-1.
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- Proteins, 2007, v. 68, n. 1, p. 313, doi. 10.1002/prot.21397
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Detection of gene duplication signals of Ig folds from their amino acid sequences.
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- Proteins, 2007, v. 68, n. 1, p. 267, doi. 10.1002/prot.21330
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Computational proteomics analysis of HIV-1 protease interactome.
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- Proteins, 2007, v. 68, n. 1, p. 305, doi. 10.1002/prot.21415
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Benchmarking of TASSER in the ab initio limit.
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- Proteins, 2007, v. 68, n. 1, p. 48, doi. 10.1002/prot.21392
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Structural and kinetic analysis of proton shuttle residues in the active site of human carbonic anhydrase III.
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- Proteins, 2007, v. 68, n. 1, p. 337, doi. 10.1002/prot.21403
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Structural variation manipulates the differential oxidative susceptibility and conformational stability of apolipoprotein E isoforms.
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- Proteins, 2007, v. 68, n. 1, p. 363, doi. 10.1002/prot.21443
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Real-SPINE: An integrated system of neural networks for real-value prediction of protein structural properties.
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- Proteins, 2007, v. 68, n. 1, p. 76, doi. 10.1002/prot.21408
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The N- and C-termini of the human Nogo molecules are intrinsically unstructured: Bioinformatics, CD, NMR characterization, and functional implications.
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- Proteins, 2007, v. 68, n. 1, p. 100, doi. 10.1002/prot.21385
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Molecular domain organization of BldD, an essential transcriptional regulator for developmental process of Streptomyces coelicolor A3(2).
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- Proteins, 2007, v. 68, n. 1, p. 344, doi. 10.1002/prot.21338
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Scoring function accuracy for membrane protein structure prediction.
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- Proteins, 2007, v. 68, n. 1, p. 67, doi. 10.1002/prot.21421
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Targeted molecular dynamics simulation studies of binding and conformational changes in E. coli MurD.
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- Proteins, 2007, v. 68, n. 1, p. 243, doi. 10.1002/prot.21374
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Conformation transition kinetics of Bombyx mori silk protein.
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- Proteins, 2007, v. 68, n. 1, p. 223, doi. 10.1002/prot.21414
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Flexible relaxation of rigid-body docking solutions.
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- Proteins, 2007, v. 68, n. 1, p. 159, doi. 10.1002/prot.21391
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Molecular recognition mechanism of FK506 binding protein: An all-electron fragment molecular orbital study.
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- Proteins, 2007, v. 68, n. 1, p. 145, doi. 10.1002/prot.21389
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The crystal structure of a novel glucosamine-6-phosphate deaminase from the hyperthermophilic archaeon Pyrococcus furiosus.
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- Proteins, 2007, v. 68, n. 1, p. 413, doi. 10.1002/prot.21322
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Crystal structure of TM1030 from Thermotoga maritima at 2.3 Å resolution reveals molecular details of its transcription repressor function.
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- Proteins, 2007, v. 68, n. 1, p. 418, doi. 10.1002/prot.21436
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Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys.
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- Proteins, 2007, v. 68, n. 1, p. 57, doi. 10.1002/prot.21362
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Crystal structure of a binary complex between human GCN5 histone acetyltransferase domain and acetyl coenzyme A.
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- Proteins, 2007, v. 68, n. 1, p. 403, doi. 10.1002/prot.21407
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Conservation of metal-coordinating residues.
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- Proteins, 2007, v. 68, n. 1, p. 123, doi. 10.1002/prot.21384
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Molecular modeling of prohibitin domains.
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- Proteins, 2007, v. 68, n. 1, p. 353, doi. 10.1002/prot.21355
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Crystal structure of human slingshot phosphatase 2.
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- Proteins, 2007, v. 68, n. 1, p. 408, doi. 10.1002/prot.21399
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Strategies to search and design stabilizers of protein-protein interactions: A feasibility study.
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- Proteins, 2007, v. 68, n. 1, p. 170, doi. 10.1002/prot.21296
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A model of restriction endonuclease MvaI in complex with DNA: A template for interpretation of experimental data and a guide for specificity engineering.
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- Proteins, 2007, v. 68, n. 1, p. 324, doi. 10.1002/prot.21460
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Identification of near-native structures by clustering protein docking conformations.
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- Proteins, 2007, v. 68, n. 1, p. 187, doi. 10.1002/prot.21442
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Superantigen natural affinity maturation revealed by the crystal structure of staphylococcal enterotoxin G and its binding to T-cell receptor Vβ8.2.
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- Proteins, 2007, v. 68, n. 1, p. 389, doi. 10.1002/prot.21388
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Structural and functional characterization of binding sites in metallocarboxypeptidases based on Optimal Docking Area analysis.
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- Proteins, 2007, v. 68, n. 1, p. 131, doi. 10.1002/prot.21390
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The bioactive conformation of glucose-dependent insulinotropic polypeptide by NMR and CD spectroscopy.
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- Proteins, 2007, v. 68, n. 1, p. 92, doi. 10.1002/prot.21372
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Principles of nanostructure design with protein building blocks.
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- Proteins, 2007, v. 68, n. 1, p. 1, doi. 10.1002/prot.21413
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