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mRNA secondary structure optimization using a correlated stem–loop prediction.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5490, doi. 10.1093/nar/gkw127
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- Article
A DNA binding winged helix domain in CAF-1 functions with PCNA to stabilize CAF-1 at replication forks.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5083, doi. 10.1093/nar/gkw106
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- Article
Bidirectional promoters link cAMP signaling with irreversible differentiation through promoter-associated non-coding RNA (pancRNA) expression in PC12 cells.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5105, doi. 10.1093/nar/gkw113
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- Article
Combining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfaces.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw217
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- Article
The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5399, doi. 10.1093/nar/gkw213
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- Article
Nascent RNA length dictates opposing effects of NusA on antitermination.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5378, doi. 10.1093/nar/gkw198
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- Article
Distinct genetic control of homologous recombination repair of Cas9-induced double-strand breaks, nicks and paired nicks.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5204, doi. 10.1093/nar/gkw179
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- Article
Involvement of budding yeast Rad5 in translesion DNA synthesis through physical interaction with Rev1.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5231, doi. 10.1093/nar/gkw183
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- Article
A new molecular signature method for prediction of driver cancer pathways from transcriptional data.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw269
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- Article
Simple, multiplexed, PCR-based barcoding of DNA enables sensitive mutation detection in liquid biopsies using sequencing.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw224
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- Article
iGEMS: an integrated model for identification of alternative exon usage events.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw263
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- Article
Local potentiation of stress-responsive genes by upstream noncoding transcription.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5174, doi. 10.1093/nar/gkw142
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- Article
Molecular insights into DNA binding and anchoring by the Bacillus subtilis sporulation kinetochore-like RacA protein.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5438, doi. 10.1093/nar/gkw248
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- Article
Editorial: CRISPR in Nucleic Acids Research.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 4989, doi. 10.1093/nar/gkw451
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- Article
Complex mitochondrial DNA rearrangements in individual cells from patients with sporadic inclusion body myositis.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5313, doi. 10.1093/nar/gkw382
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- Article
Exploring the modular nature of riboswitches and RNA thermometers.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5410, doi. 10.1093/nar/gkw232
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- Article
Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw210
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- Article
Alternative splicing affects the subcellular localization of Drosha.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5330, doi. 10.1093/nar/gkw400
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- Article
DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw226
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- Article
Structure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5450, doi. 10.1093/nar/gkw293
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- Article
Structural basis for recruiting and shuttling of the spliceosomal deubiquitinase USP4 by SART3.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5424, doi. 10.1093/nar/gkw218
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- Article
A ubiquitylation site in Cockayne syndrome B required for repair of oxidative DNA damage, but not for transcription-coupled nucleotide excision repair.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5246, doi. 10.1093/nar/gkw216
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- Article
Folding complex DNA nanostructures from limited sets of reusable sequences.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw208
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- Article
Promoter-enhancer looping at the PPARγ2 locus during adipogenic differentiation requires the Prmt5 methyltransferase.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5133, doi. 10.1093/nar/gkw129
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- Article
DNA methylation in human epigenomes depends on local topology of CpG sites.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5123, doi. 10.1093/nar/gkw124
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- Article
Cre-dependent DNA recombination activates a STING-dependent innate immune response.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5356, doi. 10.1093/nar/gkw405
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- Article
Viable RNaseH1 knockout mice show RNaseH1 is essential for R loop processing, mitochondrial and liver function.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5299, doi. 10.1093/nar/gkw350
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- Article
Another look at the mechanism involving trimeric dUTPases in Staphylococcus aureus pathogenicity island induction involves novel players in the party.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5457, doi. 10.1093/nar/gkw317
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- Article
VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw227
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- Article
Chromosome intermingling--the physical basis of chromosome organization in differentiated cells.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5148, doi. 10.1093/nar/gkw131
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Phylogeny-aware identification and correction of taxonomically mislabeled sequences.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5022, doi. 10.1093/nar/gkw396
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- Article
Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5010, doi. 10.1093/nar/gkw355
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- Article
An updated human snoRNAome.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5068, doi. 10.1093/nar/gkw386
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- Article
Nonsense-mediated decay regulates key components of homologous recombination.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5218, doi. 10.1093/nar/gkw182
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- Article
Distinct patterns of Cas9 mismatch tolerance in vitro and in vivo.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5365, doi. 10.1093/nar/gkw417
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- Article
A critical base pair in k-turns determines the conformational class adopted, and correlates with biological function.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5390, doi. 10.1093/nar/gkw201
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- Article
The Borrelia burgdorferi telomere resolvase, ResT, anneals ssDNA complexed with its cognate ssDNA-binding protein.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5288, doi. 10.1093/nar/gkw344
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- Article
RNAontheBENCH: computational and empirical resources for benchmarking RNAseq quantification and differential expression methods.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5054, doi. 10.1093/nar/gkw448
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Corrigendum.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5490, doi. 10.1093/nar/gkw127
- Publication type:
- Article
LDSS-P: an advanced algorithm to extract functional short motifs associated with coordinated gene expression.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5045, doi. 10.1093/nar/gkw435
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- Article
Studying Z-DNA and B- to Z-DNA transitions using a cytosine analogue FRET-pair.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw114
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- Article
Staufen1 promotes HCV replication by inhibiting protein kinase R and transporting viral RNA to the site of translation and replication in the cells.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5271, doi. 10.1093/nar/gkw312
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- Article
Oxidized dNTPs and the OGG1 and MUTYH DNA glycosylases combine to induce CAG/CTG repeat instability.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5190, doi. 10.1093/nar/gkw170
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- Article
Reversal of epigenetic promoter silencing in Friedreich ataxia by a class I histone deacetylase inhibitor.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5095, doi. 10.1093/nar/gkw107
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- Article
DUX4 recruits p300/CBP through its C-terminus and induces global H3K27 acetylation changes.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5161, doi. 10.1093/nar/gkw141
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- Article
De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 1, doi. 10.1093/nar/gkw225
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- Article
Use of chemical modification and mass spectrometry to identify substrate-contacting sites in proteinaceous RNase P, a tRNA processing enzyme.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5344, doi. 10.1093/nar/gkw391
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- Article
Distinct binding of BRCA2 BRC repeats to RAD51 generates differential DNA damage sensitivity.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5256, doi. 10.1093/nar/gkw242
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- Publication type:
- Article
Structure-Specific nuclease activities of Artemis and the Artemis: DNA-PKcs complex.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 4991, doi. 10.1093/nar/gkw456
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- Article
Deciphering the molecular mechanisms underlying the binding of the TWIST1/E12 complex to regulatory E-box sequences.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5470, doi. 10.1093/nar/gkw334
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- Article