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Crowding Shifts the FMN Recognition Mechanism of Riboswitch Aptamer from Conformational Selection to Induced Fit.
- Published in:
- Angewandte Chemie, 2018, v. 130, n. 23, p. 6984, doi. 10.1002/ange.201803052
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- Publication type:
- Article
Large-Scale in Vitro Transcription, RNA Purification and Chemical Probing Analysis.
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- Cellular Physiology & Biochemistry (Karger AG), 2018, v. 48, n. 5, p. 1915, doi. 10.1159/000492512
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- Article
Riboswitch Mechanisms: New Tricks for an Old Dog.
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- Biochemistry (00062979), 2021, v. 86, n. 8, p. 962, doi. 10.1134/S0006297921080071
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- Article
Regulatory RNAs in Bacillus subtilis: A review on regulatory mechanism and applications in synthetic biology.
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- Synthetic & Systems Biotechnology, 2024, v. 9, n. 2, p. 223, doi. 10.1016/j.synbio.2024.01.013
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- Article
Riboswitches, from cognition to transformation.
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- Synthetic & Systems Biotechnology, 2023, v. 8, n. 3, p. 357, doi. 10.1016/j.synbio.2023.05.008
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- Article
Non-Conserved Residues in Clostridium acetobutylicum tRNA<sup>Ala</sup> Contribute to tRNA Tuning for Efficient Antitermination of the alaS T Box Riboswitch.
- Published in:
- Life (2075-1729), 2015, v. 5, n. 4, p. 1567, doi. 10.3390/life5041567
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- Publication type:
- Article
Automated design of protein-binding riboswitches for sensing human biomarkers in a cell-free expression system.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38098-0
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- Publication type:
- Article
Observation of structural switch in nascent SAM-VI riboswitch during transcription at single-nucleotide and single-molecule resolution.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38042-2
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- Publication type:
- Article
Correction: Tickner, Z.J.; Farzan, M. Riboswitches for Controlled Expression of Therapeutic Transgenes Delivered by Adeno-Associated Viral Vectors. Pharmaceuticals 2021, 14 , 554.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Riboswitches for Controlled Expression of Therapeutic Transgenes Delivered by Adeno-Associated Viral Vectors.
- Published in:
- Pharmaceuticals (14248247), 2021, v. 14, n. 6, p. 554, doi. 10.3390/ph14060554
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- Publication type:
- Article
Aptamers in Bordeaux, 24-25 June 2016.
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- Pharmaceuticals (14248247), 2017, v. 10, n. 1, p. 14, doi. 10.3390/ph10010014
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- Publication type:
- Article
Signal amplification and optimization of riboswitch-based hybrid inputs by modular and titratable toehold switches.
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- Journal of Biological Engineering, 2021, v. 15, n. 1, p. 1, doi. 10.1186/s13036-021-00261-w
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- Publication type:
- Article
SAM-II Riboswitch Samples at least Two Conformations in Solution in the Absence of Ligand: Implications for Recognition.
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- Angewandte Chemie International Edition, 2016, v. 55, n. 8, p. 2724, doi. 10.1002/anie.201509997
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- Article
Tuning Riboswitch-Mediated Gene Regulation by Rational Control of Aptamer Ligand Binding Properties.
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- Angewandte Chemie International Edition, 2015, v. 54, n. 3, p. 905, doi. 10.1002/anie.201407385
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- Publication type:
- Article
Riboswitches Based on Kissing Complexes for the Detection of Small Ligands.
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- Angewandte Chemie International Edition, 2014, v. 53, n. 27, p. 6942, doi. 10.1002/anie.201400402
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- Article
Graphical Abstract: Angew. Chem. Int. Ed. 38/2013.
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- Angewandte Chemie International Edition, 2013, v. 52, n. 38, p. 9867, doi. 10.1002/anie.201390039
- Publication type:
- Article
A Synthetic Riboswitch that Operates using a Rationally Designed Ligand-RNA Pair.
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- Angewandte Chemie International Edition, 2013, v. 52, n. 38, p. 9976, doi. 10.1002/anie.201303370
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- Publication type:
- Article
Identification of Spermidine Binding Site in T-box Riboswitch Antiterminator RNA.
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- Chemical Biology & Drug Design, 2016, v. 87, n. 2, p. 182, doi. 10.1111/cbdd.12660
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- Article
Ligand-Induced Changes in T Box Antiterminator RNA Stability.
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- Chemical Biology & Drug Design, 2012, v. 79, n. 2, p. 202, doi. 10.1111/j.1747-0285.2011.01274.x
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- Publication type:
- Article
Single-molecule experiments: Out of equilibrium.
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- Nature Physics, 2011, v. 7, n. 8, p. 591, doi. 10.1038/nphys2054
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- Publication type:
- Article
Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements.
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- Nature Physics, 2011, v. 7, n. 8, p. 631, doi. 10.1038/nphys2022
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- Publication type:
- Article
Bacterial 2′-Deoxyguanosine Riboswitch Classes as Potential Targets for Antibiotics: A Structure and Dynamics Study.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 4, p. 1925, doi. 10.3390/ijms23041925
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- Article
Incorporation of a FRET Pair into a Riboswitch RNA to Measure Mg 2+ Concentration and RNA Conformational Change in Cell.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 3, p. 1493, doi. 10.3390/ijms23031493
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- Article
The Signaling Pathway That cGAMP Riboswitches Found: Analysis and Application of Riboswitches to Study cGAMP Signaling in Geobacter sulfurreducens.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 3, p. 1183, doi. 10.3390/ijms23031183
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- Article
Developments of Riboswitches and Toehold Switches for Molecular Detection—Biosensing and Molecular Diagnostics.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 9, p. 3192, doi. 10.3390/ijms21093192
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- Article
Tissue Expression Difference between mRNAs and lncRNAs.
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- International Journal of Molecular Sciences, 2018, v. 19, n. 11, p. 3416, doi. 10.3390/ijms19113416
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- Article
Selection and Characterization of a DNA Aptamer Specifically Targeting Human HECT Ubiquitin Ligase WWP1.
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- International Journal of Molecular Sciences, 2018, v. 19, n. 3, p. 763, doi. 10.3390/ijms19030763
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- Article
Computational Methods for Modeling Aptamers and Designing Riboswitches.
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- International Journal of Molecular Sciences, 2017, v. 18, n. 11, p. 2442, doi. 10.3390/ijms18112442
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- Publication type:
- Article
Identification and Role of Regulatory Non-Coding RNAs in Listeria monocytogenes.
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- International Journal of Molecular Sciences, 2011, v. 12, n. 8, p. 5070, doi. 10.3390/ijms12085070
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- Article
De novo synthesis and assembly of multiplex riboswitches in vitro.
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- Biotechnology Progress, 2009, v. 25, n. 5, p. 1228, doi. 10.1002/btpr.224
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- Article
Targeting FMN, TPP, SAM-I, and glmS Riboswitches with Chimeric Antisense Oligonucleotides for Completely Rational Antibacterial Drug Development.
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- Antibiotics (2079-6382), 2023, v. 12, n. 11, p. 1607, doi. 10.3390/antibiotics12111607
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- Article
A Riboswitch-Driven Era of New Antibacterials.
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- Antibiotics (2079-6382), 2022, v. 11, n. 9, p. 1243, doi. 10.3390/antibiotics11091243
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- Publication type:
- Article
Bioinformatics and Genomic Analyses of the Suitability of Eight Riboswitches for Antibacterial Drug Targets.
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- Antibiotics (2079-6382), 2022, v. 11, n. 9, p. 1177, doi. 10.3390/antibiotics11091177
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- Article
Riboswitches as Drug Targets for Antibiotics.
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- Antibiotics (2079-6382), 2021, v. 10, n. 1, p. 45, doi. 10.3390/antibiotics10010045
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- Article
Co‐crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X‐ray free‐electron laser.
- Published in:
- Acta Crystallographica: Section F, Structural Biology Communications, 2019, v. 75, n. 7, p. 496, doi. 10.1107/S2053230X19008549
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- Article
versatile strategy for convenient circular bivalent functional nucleic acids construction.
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- National Science Review, 2023, v. 10, n. 2, p. 1, doi. 10.1093/nsr/nwac107
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- Publication type:
- Article
Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping.
- Published in:
- eLife, 2018, p. 1, doi. 10.7554/eLife.29602
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- Publication type:
- Article
Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation.
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- eLife, 2017, p. 1, doi. 10.7554/eLife.21297
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- Publication type:
- Article
Rational design of aptazyme riboswitches for efficient control of gene expression in mammalian cells.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.18858
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- Article
The light side of the force.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.14274
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- Publication type:
- Article
Observation of long-range tertiary interactions during ligand binding by the TPP riboswitch aptamer.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.12362
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- Publication type:
- Article
Lithium-sensing riboswitch classes regulate expression of bacterial cation transporter genes.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-20695-6
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- Publication type:
- Article
Aptamers, Riboswitches, and Ribozymes in S. cerevisiae Synthetic Biology.
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- Life (2075-1729), 2021, v. 11, n. 3, p. 248, doi. 10.3390/life11030248
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- Publication type:
- Article
A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-021-27790-8
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- Publication type:
- Article
Switching at the ribosome: riboswitches need rProteins as modulators to regulate translation.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25024-5
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- Publication type:
- Article
Phylogenetic Analysis and Comparative Genomics of Purine Riboswitch Distribution in Prokaryotes.
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- Evolutionary Bioinformatics, 2012, n. 8, p. 589, doi. 10.4137/EBO.S10048
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- Article
Attenuator LRR – a regulatory tool for modulating gene expression in Gram‐positive bacteria.
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- Microbial Biotechnology, 2021, v. 14, n. 6, p. 2538, doi. 10.1111/1751-7915.13797
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- Article
Bacterial riboswitches.
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- 2011
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- Publication type:
- Web Site Review
Alternatives to vitamin B<sub>1</sub> uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 12, p. 2517, doi. 10.1038/ismej.2014.146
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- Publication type:
- Article
The energy-spectrum of bicompatible sequences.
- Published in:
- Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00187-4
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- Publication type:
- Article